Array 1 31464-30122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENK01000019.1 Clostridium novyi A str. NCTC 538 Contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 31463 30 100.0 34 .............................. GCTATTTGGACACTTTCTTCGTTACTTAATTTCC 31399 30 100.0 35 .............................. ACTTCATCTGTTCCAATTTCGATTGGAACATATTT 31334 30 100.0 38 .............................. ACGTCACACAGTACACCCCCATTTGTCTACTGGACTTC 31266 30 100.0 37 .............................. CCCATCTTCTGTCCTCCTTCCTCTTTAACATTGGAAA 31199 30 100.0 34 .............................. ATATTACATAATCACCTACTTGCGGTTTTATCTT 31135 30 100.0 36 .............................. GACGAAACACCTAACGAGGTAAAAGAAAAAATAGAA 31069 30 100.0 36 .............................. ATTATAGACCTCTTATCATCATCAATCGTAAAATTA 31003 30 100.0 36 .............................. TCGATTGTAAAGTTAAATTTTTTATTAGTAGCCATT 30937 30 100.0 35 .............................. TAACTCCCAGGAAGAAAAAATATAATTTTGTTACA 30872 30 100.0 34 .............................. GGAAAAGAAATTTACAGGTCTAATATTTTGAATT 30808 30 100.0 35 .............................. GCACTAATACATGCATCTTCACTATCCCACCAATA 30743 30 100.0 35 .............................. TACTTGAAATTTCTTGTTTATATTGTCTAGTTTGT 30678 30 100.0 35 .............................. AAGAATGGATAAATCAGATTTTAGAATTGACACAG 30613 30 100.0 36 .............................. TACTTATTTAGCAACCCCCGAAGTAATTGAGGCAAT 30547 30 100.0 36 .............................. TCTATAACAACTAAAGATTGGTGCTCAACACCAATT 30481 30 100.0 37 .............................. TTTACAAGTGTTCGCTTTTAGTTTTTCGACAATCTTT 30414 30 100.0 36 .............................. CATAAATGTTTCTTCTTTTTAAATTTCTTTAATATT 30348 30 100.0 35 .............................. AATCGACTTTATAATATTGAGTGTGGACATAATTG 30283 30 100.0 35 .............................. GCATAATTAAATAATTTATTTGCTTGAGAGTGAGA 30218 30 100.0 36 .............................. ATATATTTAAAAAAGTTTCAAGTTTTTTCAAATTTG 30152 30 93.3 0 ...............T.........C.... | G [30124] ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.7 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AGCCATTTAGACTTAAGGAGAAGATGTAATGAGTAAAAATATGAATTATAACTATGCATTTTTATTTTATGATGTAAAGGAAAAAAGAGTAAATAAGGTTTTTAAAGTTTGTAAAAAATACTTAACTCATTATCAGAGATCTGTTTTTAGAGGTGAAATAACACCTTCAAAAATAATAAAACTTAGAGAAGATTTAAAAAAAGTTATAGATGAAAGAGAAGATTTTATATGTATAATAAAATTATTAAATAACAAAGTGTTTGGCGAAGAGGTACTTGGCATAGATATTGAAACAGCAGAAGACTTAATATTATAAAAATTATTTTCCCAATCGATTCATAAAGTAAAATCGCTTAAACCTCTTAATTTAAAAGGGTTTGATAAGGTTTTTTAGTGAAAAAATTAAATAATCAAAATCGGTTGGGAAAAAATTAACGAAAGTCTTTATTTTCAATACTTCCAAGGGTATAATGAAAATAAGGAATGGCTATTTTACTGTA # Right flank : TTATTAAATAAGGTTTCTTTATAAGATTAGATATTGTTCATAAATAGACAAAAAAGCAAAACTGGATTTTCACAGTTTAGTGGTAATACTATATAAAAACAAAAATAAGTATTAAATAAGCTCTAGGTTAATCCTAGAGTTTTTAGTATAATTTGAAGTTTACTAAGATGAAATTAATATTTTTGGTATTTGAAATTTATGGAAAAATATTATATAATTTTTATATAAATATTAATATTGGAGGTATATATGAAAAGGTTTTCGGAGTATAAGATTAAATTTATTGAAAGTTTAATTTTATGTTTTATGTTAATGCTAGGAATAAGATTTACATCTTTTGCAGATACCAAAACTTTTTCATCGGAGATTGTAGACACACAAAAAACTAAAGATAAGGTCATGATAACAAATGGTAATGAAAATATTAAAATTCACTATATAGATGTTGGGCAAGGAGATTCTGCTTTGGTTCAACAAGATGGATATACTATGTTAATTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 42534-40846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENK01000019.1 Clostridium novyi A str. NCTC 538 Contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 42533 30 100.0 35 .............................. CAAAGCTACAAACGACAAAACAGGAGCATTTAACG 42468 30 100.0 38 .............................. CATGGTGATTATGAAGTATATGAAGAATCAGTCGGTCA 42400 30 100.0 35 .............................. AAAATTAAATTCCTATTATAAGAATTATTATCAAC 42335 30 100.0 35 .............................. AAGCCTAAATGCCTATGCTGAGTAAAAAATTCTAA 42270 30 100.0 34 .............................. CGCTCATTTTGTCTATCTCACTAATCGTTAGATT 42206 30 100.0 35 .............................. TCCGTAGAATAGAATAGTTTAGTGTTGGCAATTTC 42141 30 100.0 35 .............................. ACTTTTACAGTTATATCATCTTTCTTGCTAAATGT 42076 30 100.0 36 .............................. TCTCTATACTTGTAATTTCCATTTGGAAAAGTTTCG 42010 30 100.0 36 .............................. CCGATTCTGATTTGTCGAATCCCATTTGAGTAGAAA 41944 30 100.0 35 .............................. CTAATTGTTGTACTTAGTAATGCTTTATTATTTTG 41879 30 100.0 36 .............................. TAGAATTGTAAAGATAAAAATATTTTAAAAATTAAA 41813 30 100.0 36 .............................. ATATTTTCTTTTATTTCCTTAACCATTTCTTGTAAT 41747 30 100.0 37 .............................. AAAGTAAGAAATTCACACTTGCTTATACAATTTGCAA 41680 30 100.0 34 .............................. TTTTCAGCTGCAGTTAAATTTGTTGTTTCTTCAC 41616 30 100.0 35 .............................. GTAAAGGAAATAATGATTTCCTTGAATTTATTAAG 41551 30 100.0 36 .............................. CAAAGATAAAAAGGTTCAAAGTAAAGAAGAGCAATT 41485 30 100.0 36 .............................. TTGGACGCTTTAATAGGACAGGTTGTTGACATAAAT 41419 30 100.0 36 .............................. CTTATACTATCATTCTTCTTTTTACCAGCTTGTTTT 41353 30 100.0 35 .............................. TCATCTGACCACTATAATATATCGGTGAGGTTTGT 41288 30 100.0 37 .............................. GGCGAAAAGAATTGCTTTAACTAATAAAGAATTGCAA 41221 30 100.0 36 .............................. TTATGTTTACTGTTTTGTTCATGTTTCCGCCTGAAA 41155 30 100.0 36 .............................. CTTTAATAACGCTTATTCAAGTTATAACGGGGCTTT 41089 30 100.0 36 .............................. GATTTATAAATATTTGAATAATCTTTTTTAATTAAA 41023 30 100.0 35 .............................. AAGCTACAAACTTTATTTGTTCTATTGTAAATTCA 40958 30 93.3 52 ................A..C.......... TTAATATTCGTATGAGGTGCAATTATGTTATAATAAAAGAGAAAAAATTATT 40876 30 90.0 0 T..............AA............. | C [40867] ========== ====== ====== ====== ============================== ==================================================== ================== 26 30 99.4 36 GTTGAACAATAACATGGGATGTATTTAAAT # Left flank : CAGATAATTTTAAAGTTTATGTATATTTTGATGATGGTTCTATTCATTTATATGATGCAAGTTATTTAATAAAAAATGGAGTTTTTAAAGTTCTCCAAGATATTAACTTGTTTAAGGAAAAATGTACTGTACTTAATGGAACTTTAGCATGGAGTTTAGATGATAGCTATGATGAATCAACTTGTTTAGATATAGATCCGTTTGTAATATATGAAGAATATCCAGAAGTAGATGAACCTGAATTTATTTTTAACATAAGTGATAAATTAAAGTTATAAAAATAGATATTGAAACAGCAGAAGACTTAATATTATAAAAAATATTTTCCCAACCGATTCATAAAGTAAAAGTGTCTATACATCCTAATTTTAAAAGATTTGATAAGGTTTTTAAGTGAAAAAATTAAATAATCAAAATCGGTTGGAAAAAAATCAACGAAAGTCTTTATTTTCAATGCTTCCAAGGGTATAATGAAAATAAGGAATGGCTATTTTACTATG # Right flank : GTAATTAACTTTTGAATTTTAAAAATAATGAATATTAACATGAGATGTAATACTACGGAAAAAATTTTCGTAGTATTTGTTATAGTTATCAGTAATAAACTTATGAAACATTACATAGAATTAATTATTAATAAAATTATTTAAAAAGGAGATTTAAATAATGAAAAATATAAGAAGTTTTTTAGCAAATATAAGTTTAATAAAGATACTAATAATAAAAATATACTATTATATATTATTAATAGACAAAAGATTATATAAAAATAAAGAAAGGCAATTTAAGTTAAATATTGATATAGAAGTATATAATCTTAAATAATTAAATACAAGGTAAAATAGGGTTGAAAATATTTTCTTCAACTCTATTTTTTATATTAGTAATTAACTTATAAATTTTATTGACAATGTTAATTAATGGTATTATTATATAAATAAGGGGTGAAAATATGGAAGTGTTTGAAGAAAAAGTAAAAGTGTACTTGTTAAATGATGTACGAAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 46702-43391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENK01000019.1 Clostridium novyi A str. NCTC 538 Contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46701 30 100.0 36 .............................. ACCTCTAATGCTTTTGCAACATCTTCCTCACTAGGG 46635 30 100.0 36 .............................. TCTGTTACCGTAGCGTATAGCACCTTTCCATTTTGT 46569 30 100.0 37 .............................. TTTTGTTACCTCCTGTTTTCTTTATATATTAATTATA 46502 30 100.0 38 .............................. GTGGAAGAATAGCCACCAGAAACTACGAAAACAAAGAA 46434 30 100.0 36 .............................. TTTTCGCCTTTTTAGGTTTCTTTGCTTGTGTACCTT 46368 30 100.0 35 .............................. GGAATTGCGTCGGGATTTTGTGGGATTGAATATGT 46303 30 100.0 35 .............................. TATCCTCCACACTATACTCACCATCTTCCAAGTAA 46238 30 100.0 36 .............................. TCAATCGTAAAATTAAACTTCCTATTAGTCATTATA 46172 30 100.0 36 .............................. CCAATAGCCAAAATTTCTGTAATAGGACAGAAAAAA 46106 30 100.0 36 .............................. TAAAGTTACAACCTTACCATTAGTAGAAAACTTAGG 46040 30 100.0 36 .............................. AAGCCTTTAGCAGTCCACTTAAAAGCCTGTTTGCCT 45974 30 100.0 34 .............................. CTCTTAACACGAGCAAGAATAGTAAAAACAGAAG 45910 30 100.0 36 .............................. ATAGTTTTTCCAATTATAAGAAATAATCCGCTACAT 45844 30 100.0 35 .............................. CACTTTACGTTCTTGAGAAATAAAAGAACGAATCA 45779 30 100.0 36 .............................. AACACAAACGCACAATGTAAATGCGGGTGATACCTA 45713 30 100.0 36 .............................. AAAAAGAGATACAGGAAGATAATGCGGTGGATTATG 45647 30 100.0 37 .............................. TTTTGAAAGCCACAGATTCCGCCTCAAAATCCTTTAA 45580 30 100.0 36 .............................. ACCATTTTTGTAGCCCTTCTACATCTTGTGTTTGTA 45514 30 100.0 35 .............................. TTTTGACTATCCAATGCATAGATTTTTGGATAACC 45449 30 100.0 37 .............................. TGCTTTCCCATATGCCTTTGAAGATATTTTTAATGCC 45382 30 100.0 37 .............................. GACGAAACACCTAACAAGGTAAAAGAAAAAGAAAAAA 45315 30 100.0 36 .............................. GAATCGGCAACGCAAGGGTTAAGGAGATATACAATT 45249 30 100.0 34 .............................. TTGTAACCGGCGTTTAAAATAATTCCGTCACCGT 45185 30 100.0 34 .............................. ATCATGCTTGTACCATCTTCGACAGGTTTCTCGG 45121 30 100.0 36 .............................. AGCAAAATTCGCTAAACTTAAGTTATCCTCTAAGAG 45055 30 100.0 36 .............................. GAAAATGGAAACTGTAGAGCGTGTAGATATGTTAGA 44989 30 100.0 36 .............................. TAATAATAAAATATGTGGAGAGTACCCTCTATTAGT 44923 30 100.0 34 .............................. GATAACTCTTTAAAATATTCTGCACCTTCTAGAC 44859 30 100.0 34 .............................. CTTAAACCACTAGGAACACCTCCTGGACCTTCTG 44795 30 100.0 37 .............................. AACTAAAAGTCATTTGCGGTTGTTCCAAACGTTCAAC 44728 30 100.0 36 .............................. ATAGAGTTGTCTTTCATATCTCCAAGACCTATAGCT 44662 30 100.0 34 .............................. TTCCATACCATATCGTTAAAAGCCTCTTGTTCCC 44598 30 100.0 35 .............................. GATAGCCAAGAGAGCTGTTTAAAATTCATGTCGCA 44533 30 100.0 36 .............................. CGTTCGGTTAACGGAAGTAATGCACCTTTAAAAGAA 44467 30 100.0 36 .............................. TAAATTCGAGCTGAACATTTTCCAACGCACTATTTA 44401 30 100.0 35 .............................. TCTGTTACCGTAGCGTATAGTACCTTGCCATTTTG 44336 30 100.0 36 .............................. TCCGTTATAATTCCCATTGCAATATTAGCAATGGGA 44270 30 100.0 34 .............................. GAATAATCTATCGCATTATCTTCCTGTGTTTCTT 44206 30 100.0 34 .............................. TTCCGTCAATTTTCGTTAAAGAGGCCAGTAATCT 44142 30 100.0 35 .............................. GATACGCAAGGCTTTAAGCACGATATAGGGTTTAG 44077 30 100.0 36 .............................. AAAAAATCTTGTCCAGTTTCTATGTGTCCACACACA 44011 30 100.0 36 .............................. CAACAAGCTATTTTATATTCTGTTATAGGGTATGGT 43945 30 100.0 36 .............................. TTTTCAAAATCTATCTTTTCCATGAAAAAAATGCCT 43879 30 100.0 35 .............................. TTGTAATTTAAATAATGGAGATAATGTGCCAATTC 43814 30 100.0 36 .............................. ATATTCTTTAGTTCCCTTTTAATATACCATATCGCT 43748 30 100.0 37 .............................. GTGGAAATATGACAAGCGTACAGGACAAAGAATACCT 43681 30 100.0 36 .............................. TCGTCATTATCCCCGTTTTTATCCTTTTCTAATACT 43615 30 100.0 34 .............................. ACAAATCGGTACATTTGTACCTACACCAAATATA 43551 30 100.0 36 .............................. GTAAATATAAACAATAGATACAAATTATTAAAAAAT 43485 30 100.0 35 .............................. ATAGTTCAAAAACTTAAGTTTGGTAATACAAGCTT 43420 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ====================================== ================== 51 30 99.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TGCAGGAATGTTGAGGAGTGTTGGAGTTCCTACTAAATTAGTAATGGGATATAAAAATGATATAAAAACTTATCATGCTTGGAACCAAGTATATCTACAAAAATCTAATAAATGGGTTACTATAGATACTACCTATGATTCATGTTTAAAAAATAAAAATTTATCACTTTCAATGATAAAGGATTCAAATCAATATAAAGTTAGTAAAGAATATTAATTTAAATGGAAATAAGCAGATAACCACAATTGTTGGTTATCTGCTTTTAGTTTTGTTTAATTAAAAATGTTTATAAAGTATTGATACATACGATTTAATATGAAATTTTCCCAACCGATTCATAAAATAAAATCCCTTAAACATCTTGATTTTAAAGGGTTTGATAAGGTTTTTCTATGAAAAAATTAAATAATCAAAATCGGTTGGGAAAAAATCAACGAAAGTGTTTATTTTCAATGCTTCTAAGGGTATAATAAAAATAAGGAATGGCTATTTTACTGTA # Right flank : TAATTCATGATAGAGTTTTTTATATAAATTTATTAAGGGAGTGATTATATGCCAGAAATAAGTTTATTTTTTGGAATAAGAGTTACTATAAATTATAACGATCATGTTCCGCCACATTTTCATGCTGAATATAATGGAAATAAAGTTTTGGTGGATATTATAAATTGTAAAGTAATAAAAGGGTTTTTTCCTAAAAGACAACTAAAATTAATTCTTGCATGGGCTGAGATACACAAGGATGAGTTAATGCAAAATTGGGAACTTGCAAGAAGTCATCAACCATTATATAGAATTGCACCACTTTCTTAGGAGGGATGATTATGGAATATATGCCTGAGGTTATACAAGTTATTCCTACAGATAATTTTAAAGTTTATGTATATTTTGATGATGGTTCTATTCATTTATATGATGCAAGTTATTTAATAAAAAATGGAGTTTTTAAAGTTCTCCAAGATATTAACTTGTTTAAGGAAAAATGTACTGTACTTAATGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //