Array 1 184745-185253 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVZ01000006.1 Escherichia albertii strain HIPH08472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184745 28 100.0 32 ............................ ACCAAAATGGTTACGCCCAAACATCCATCATT 184805 28 100.0 32 ............................ TGTTAAATCAGCCCTGCGGATTTGCGGGCGTT 184865 28 100.0 32 ............................ AGCCAGTCCGCAGGTATCAATAATTAATTTAC 184925 28 100.0 32 ............................ GCGCTATGCTCACCGTCGGCACAAAGCATATA 184985 28 100.0 32 ............................ CAAAGGGCGCACTGCAACCGTCAGAATCAGAA 185045 28 100.0 32 ............................ TGGAAATCATGAGCAGCCCCGCAGACACGAAC 185105 28 100.0 32 ............................ ACCAGCGACTTCAATCGCTTTATCCAGACCAG 185165 28 100.0 32 ............................ GACTGGTTTAAACAGCGCTACGGCCAGATGTT 185225 28 92.9 0 ....................T...C... | C [185248] ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGCCAGGTGACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGCTTCCAGAGTGCGCAAAAGCATAAACCGGAAGCCGCGCATTAATCTGATGGCGAAAAAAAATGCCTGATGCGCTGCGCTTATCAGGCCTACAAGGTTCGTGCAATCTATTGAATTTGCATGATTTTGTAGATTGGGTAAGGTGAATGTGCCGCATTCGACATAAACAAATCGCACGTTGTTAACAATCTGAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGCGCTTCGACGGAGCAGATGTGACCTTTTTTTGCGGGGGTGACGTAATTTATTGATAAAACTATGCGCAGGGATGTAGGGATAAAAAAGGGTCTGAGCGGGGAGTATTGATGGTTTCGCTTTATTAACAACGGACTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCTTCAGCACACAATAACAATAGTAATAATTGCGACGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACAGCATTGATGTTGGGGATGGGAACATCCGTGACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 199693-200441 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVZ01000006.1 Escherichia albertii strain HIPH08472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 199693 28 100.0 32 ............................ ACCAGCAGCGGCAGATTAAATAAAAAGCCCGA 199753 28 100.0 32 ............................ GTGACCGTCCCTGCAAATGCCGGATGCACAAT 199813 28 100.0 32 ............................ GAATTAACTCGGCGAACGGAGTAAACGATGTG 199873 28 100.0 32 ............................ AGTGATTCACGCGGCGAACTGTGTTACCTGCA 199933 28 100.0 33 ............................ ACGACACCAGTTAAAAGGTGAGGCGCTCGACAT 199994 28 100.0 32 ............................ ACCACCGAAGCGGCCATGTCCTGGCTCAAAGA 200054 28 100.0 32 ............................ CGACGGGCACGAATATCAATTCCGAATCGTTT 200114 28 100.0 32 ............................ AACACGAATAGATCGCATTGTGAACACCTCCG 200174 28 100.0 32 ............................ GCATAGACAACACAGACCGTCATCGCGCTGGA 200234 28 100.0 32 ............................ TTTGTGACGTACTGGCGACAATGGTTTATCAG 200294 28 100.0 32 ............................ CCGGTGATACGGGCGGAACGACGCGTTTTTTG 200354 28 100.0 32 ............................ GACAAAATGCGATAGTTTGACAATGTGTCATG 200414 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCATCCCCCCGGATGTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCCTAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTCTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAATAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 115485-114661 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVZ01000003.1 Escherichia albertii strain HIPH08472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115484 29 100.0 32 ............................. AGTTTTCGAAAGAGTGGAAGGATGCCAACGAT 115423 29 100.0 32 ............................. TTTGTGCTTACTGTGTAATTCTGATTTGATAG 115362 29 100.0 32 ............................. CCATTCGCGCAGGGAGAAGAGGGGTTAACAGA 115301 29 100.0 32 ............................. GGTAGCATATATTTTGCCGGGTCATAACGGCA 115240 29 100.0 32 ............................. AAACAAACCTTAATAAGATAGACCTTGTTGCG 115179 29 100.0 32 ............................. TTAAATACTTCGACCACGATGAAAAATCATAT 115118 29 100.0 32 ............................. TTTGTAGTATTGAAGAACTGGTCGCGGAATTT 115057 29 100.0 32 ............................. TCGCTTTCTTCGGTCTGGTCAGCGTGGTCGAT 114996 29 100.0 32 ............................. ACATCGTGGATAACAGCACCACAGAATTACGA 114935 29 100.0 32 ............................. GCACAGAAAGCCGCCGTTGACCTGACGAAATA 114874 29 100.0 33 ............................. ATATATCCAACCGTATCAGTAAACGGCGTTTTC 114812 29 96.6 32 ........T.................... CAAAAAACTCCTGTGGTTGGGGCTGAGCCAGG 114751 29 100.0 32 ............................. CTCCGCTACCGCCTCGGTGAACAGGTACACAT 114690 29 86.2 0 ........................TCTG. | A [114663] ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGCCTGAAATATCACCCATTATGGGACGAAGGATATTTATCGGTTGGTGATACCCATACAACCCGTAAATGGGAACCTGGTATGGCGGAAGAAGAAACGCGTTTCTTTGGCTTAAAAAGGGAATGTGGGCTGCACGAAGGGTAAATATTGCCGGATAAAATAAACGCCTCTGTCAGAAATGATGGGGGCGTTTTTATTTTGCGAGCAGCATTCCTGATTTTAAACGTGAACGTCGTTGGAAGAATTAACAGGTATAGAATGGCGTTGGGTGCTTGAGGCTGTCTGGCGTTAAGCATTCGCGAGGTTCCAGATGGACAAAAGCCCCAGGCGATATTTCTATCAACCTGAGGCCAGCGTTCGAACCTAAGCAATTCGGATGTTAGTCTCTTCTTTGCAGGGAGGCAAGACATGCTAACAAAATATGCCCTTGTGGCAATCATAGTGCTGTGTTGTACAGTGCTGGGATTCACGCTGATGGTAGGCGACTCGTTGTGTGAGT # Right flank : CTTCTATTTTCAAACTCATCAGGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTCGCTTCAACGGAAAGTACAGCAATACCTGCTTTGTCGAAAACTTCTGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGTTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132146-131812 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVZ01000003.1 Escherichia albertii strain HIPH08472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132145 29 100.0 32 ............................. AGATAGTGCCGGTAGGGGTAACCCGCGCGCTT 132084 29 100.0 32 ............................. ATTATGCGCGCTACGGAGATATTTGGGCCTAT 132023 29 100.0 32 ............................. GAATCGAACCATCATCGCTTGCGCAATGGGAC 131962 29 100.0 32 ............................. GGATTCGAACCCCTATTAACAGTTTCGTAGAC 131901 29 96.6 31 .............C............... GACTCGCAATCGCCGGAAGACGCGATCAGTT 131841 29 93.1 0 .............C..............A | A [131838] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GGGTTCCCCGCGTTAGCGGGGATAAACCG # Left flank : CTGGATGAGCTATTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCTATCCGGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTCTTTGTTGGAATGAAAATTATTGCGGTAGAGTTTGGTAGATTTTAGTTTGTATAGAATCACTTTAAATATTTAACTTTTCACTCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TACAGTTGCGTTCAGGCCGGGCAGTTTCCCGCCCGGTTTTCCTCATTTAGGCATTCGACCAGCTCTGGATTGAATCTGCATTCCCTAACTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATGCCCTTATTCATTGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGACATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGTGTAATCTGGGTATAACCCCAGTCCTACCGTCGTATTGATCGCCGCTCCCAGGCTTGCACAGCCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCAAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGTTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //