Array 1 405691-409500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFZH010000002.1 Chryseobacterium sp. X308 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 405691 47 87.2 29 .A.A..........C.....T..........A..A............ GCTTGTTTCATTGGTATATGTGCTGTTAA 405767 47 91.5 30 ......................C....C...A.......A....... TTTCAATCATGAACCTAGACTATCAAATAA 405844 45 83.0 30 A...............G.G.....G.......T..--......T... CAAACCAATGGGGAAACATATTAGTAGTTA 405919 47 89.4 30 TC.........T...............C...A............... ATTTAATTCCCGGAAGTAATGAGGCTCATG 405996 47 78.7 29 .C.....G...T.C.........G...C...A.........T...AG TGCCTTTGAGTGAAGTTCTCACGGAAATG A [406012] 406073 47 89.4 30 ................G..........CT..A......G........ AGTGTTTTATTATCACCTACAGGCGATACA 406150 47 93.6 30 ....................T...C....................A. ATTGGATTACAATTCGTCAATACGGAAGTA 406227 47 93.6 30 ....................T...C....................A. CGGCATTTCATCCATTGTTTGTTAACCCCA 406304 46 89.4 31 A.......C.......-..............T..........T.... TCTTTCTATTTCTTCCATGTTTTTCCATGGA 406381 47 95.7 30 ............C....T............................. CATTTACCGGATTCAAATCACAAACACAAC 406458 47 93.6 30 ...........................C..C........A....... AAACCTGGACTGAACTAAAAGAGACCATGT 406535 46 93.6 30 ................-..........C...........A....... TCTTCAACCTTCCGGAAGACCAGTTTATCA 406611 46 87.2 30 ....C.......C.............-C........CC......... AAACTAACCAAAGTGTAGCTTTTTGATTTA 406687 47 95.7 30 .....................A...............C......... ACTAAATTATGAAACAGTTACAACTCGATT 406764 47 87.2 30 .G.............T.......G....A........C........T TTTAACTACACGAATTATCGTAAATTTACT 406841 47 93.6 30 ......G..........................A...C......... TACGGAAACCCACAATACCAAATCAACTAA 406918 47 89.4 30 ................G..........CA........C.....A... ATGTTTCAAAGCAATCTGGAATTTACTTTG 406995 44 87.2 30 ................-........C.C...--............A. GAAGTAAGAAAAGAAGCAATCGAGTCAGTA 407069 46 91.5 30 .........C......-..........C.........C......... AAACTAACCAAAGTGCAGCTTTTTGATTTA 407145 47 93.6 30 .....A............T..A......................... TTAGAGCACAAAGACCCCATGCGGAGGACT 407222 47 89.4 30 ............A.....TCT..........A............... ATTGGAAATATTTTGCGTAACGAATTCGTT 407299 47 95.7 30 ...........................C.......G........... GAAAAGAGATTAATCCGAATCGAAAACGAC 407376 47 95.7 30 ...........................C...........A....... ATCGCCAGGAACCGGTATGATTTAACGAAC A [407392] 407454 46 93.6 30 ................-..............A.........T..... AATAAAACTAGCTATGAGTCACCAAGAGAA 407530 46 89.4 30 .....A..........-........C.C............C...... ACCAGATATTCAGACGTTGGAAAAGGCATG 407606 47 93.6 30 ........C.............C.C...................... CTGGAATAAAAACTCCAAAAGAGCTAACTA 407683 47 100.0 30 ............................................... GTTAAGGCCGTAAAGGGTTTGTTTTTTATC 407760 47 100.0 30 ............................................... AACCATGAAACAGTTAGAGATAAAAACAAA 407837 47 100.0 30 ............................................... TTCACACTATTTCAGGACGCTTCTCAGAGC 407914 47 100.0 30 ............................................... TGAAAAAATTTTAGACAGATATCTGCACTA 407991 47 100.0 30 ............................................... CAAACTTGTAATACATAGCAAAAGCGTTCT 408068 47 100.0 30 ............................................... AAACTGCATAAATGAAAGGATTAATTACTG 408145 47 100.0 30 ............................................... TGCCTCCTCGTCTCGGTCGTTTGAACATGA 408222 47 100.0 30 ............................................... TTTCAGAAGGACAGTTTACAATCGAATATG 408299 47 100.0 30 ............................................... GTAATTGAAAATATCTTCATCAACTAAGGC 408376 47 100.0 30 ............................................... AGACCCTTACAAGTTCTATCATAGGGAGTA 408453 47 100.0 30 ............................................... AGACCCTTACAAGTTCTATCATAGGGAGTA 408530 47 100.0 30 ............................................... AACGTCGAAAAAATCGTGGTGAAGATGTTT 408607 47 100.0 30 ............................................... AGGCTGAAACACTGGAAGCATTAGAACAGT 408684 47 100.0 30 ............................................... TTGATGGTGACAATTACATTTGGGGAGATA 408761 47 100.0 30 ............................................... AAACTTAAAATTTTGGTGAATACTGAAGCG 408838 47 100.0 30 ............................................... TTGATGCTGATAGATTAATAGATACTATAG 408915 47 100.0 30 ............................................... ATCATTACCTTATCATAACCGGGCAATTAG 408992 47 100.0 29 ............................................... TAGATCTTCAAGATTTGTATTCAGAAGAC 409068 47 100.0 30 ............................................... GAAAGAGAAAAAAGAAAGTGTTTTAGATGA 409145 47 100.0 30 ............................................... GAGACAGCAAAACAGAAGTTGGATGATGCT 409222 47 100.0 30 ............................................... TGCGCAATTTCTTTAGGCAAATCAAATATT 409299 47 100.0 31 ............................................... TATACGACCACATATTGTCAATTGATGACGT 409377 47 100.0 30 ............................................... TAAAGGGCGTGATTATACAGCACAACGTTT 409454 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 50 47 95.2 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : TATTCAGTAAATTTATACTATGAAAACAGGAAATAAAAAAAGACCAAGTTTTGATATTGATCCTTCATTTTTTTGGGATTTTGATTTAGATGAGATGGATCTAGATAAAGCCTATAAGTCAATTATTGCCCGTATTGTTGAACGTGGCAATCAAAACGACATTGATAGAATTGTAGAATTTTATACTTACGAAAAAGTAGTCAAAGCAATTCGTGACGAAATCCATTTCCTTCCAAATTATGCAATTGATAAAGCTATAGAATTTTTCCCCGAACTTAAAAAAGAGGATATGCACTGCTATATCAATCGTAAGGATAAACCATATCATTGGATATAGCTAAGAAACTAGTTATTTGAGACATAACTCAAAAATATAATTGAAAGGAGCTACATTGGAAATAACAATGGCAATAGTAATGGATAAACGATTATGAATTGCAAAAATTACTATCTTTCCAACCACTTACAACAGCCTAAAACCTTTCACGATACATTGCATA # Right flank : CCTCAAAAAATAATCTACTGGTTTTCAGTAGATTATTTTTATATTTAGAATTTAAAATTTAGAATAATTCAAGCTGCTGAAAGGTTGGAGGTGGCTCTTCTTTATTCCTGGCAAAGAAGATTTCAATATCTCCAAATTGTTTGTCCGTGATACACATAATGGCCACTTTCCCGGCTTTTGGAAGTATAAATTTAACTCTTTTAATATGAACCTCAGCATTTTCCCGGCTCGGACAATGGCGTACATACATTGAGAACTGAAACAAGGTGAAACCATCATCAATGAGCGCTTTCCGAAAGCGGTTAGCATCTTTCATATTCGCTTTGGTCTCAGTCGGGAGATCATATAATACTAAAACCCACATAATCCGGTATGCGTTAAACCTTTCGGCGTTCATAACAGTTCAGGATAAGAAATCAGTCTTTTTTCTCCTGTATAGCATTTGTAAAGCGACGAAGCCGTCATTTTTACAGCAACCAGCAATGGCCTTGTTTTATCAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [73-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //