Array 1 214583-216684 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDA01000002.1 Moraxella catarrhalis strain 23/41/1 23-41-1_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 214583 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 214643 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 214703 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 214763 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 214823 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 214883 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 214943 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 215003 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 215063 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 215123 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 215183 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 215243 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 215303 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 215363 28 100.0 32 ............................ ACTGATAACAGCGACCAAAAAAAGAAAATCCG 215423 28 100.0 32 ............................ TGCCGTATCTTGAATTGAAAGCAAGTCCATTG 215483 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 215543 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 215603 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 215663 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 215723 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 215783 28 100.0 32 ............................ ATTATATTCGTTATTGGGTGCATTAGTTATAC 215843 28 100.0 5 ............................ TTAGC Deletion [215876] 215876 28 100.0 17 ............................ CAGTATTAATCCGTCTT Deletion [215921] 215921 15 53.6 0 ...............------------- - Deletion [215923] 215936 28 100.0 32 ............................ TGACGAATCTAGCCGTATTCAGTATTTAGCAT 215996 28 100.0 33 ............................ TACTAGATGGTGCTAGAACTGAAGAACAATTCT 216057 28 96.4 32 ........T................... ATGAATATTGCAAATTCACAGATTTTTGATAT 216117 28 100.0 32 ............................ GGATGGGGTGCTATTTATGCATAGAAAAGTTT 216177 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 216237 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 216297 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 216357 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 216417 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 216477 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 216537 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 216597 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 216657 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.6 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //