Array 1 24029-23201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNMM01000156.1 Neisseria meningitidis strain S00-1229 11-013_contig279, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24028 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 23962 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 23896 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 23830 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 23764 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 23698 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 23632 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 23566 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 23500 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 23434 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 23368 36 100.0 30 .................................... AGGCACTCGGCGGCGGATTGAAACGGGATA 23302 36 100.0 30 .................................... CAGCTTATTTGATCACACCAACAACGGTAT 23236 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CCATGCGTGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATAGACTTAGCACGTTTAACTTGCTTAACAAGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCAAAAACTTTTTAGGGGGGTCGAAAAATACGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCAAAGCTATAAACACGTTTATCTGTTGTTAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATATGGGGTATGCAATTACATCGCTTGGGTTTGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATAAATTATACCAATGGCGAAAATCTCGGGCGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATGCTCAGTTGGAACAATGAATACATCTTGAAGTTGTAGCTCCCATTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCAGTGCTACAATATAGGTTCTATTAATACGTCTTTCGTCTTC # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 25391-24155 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNMM01000156.1 Neisseria meningitidis strain S00-1229 11-013_contig279, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 25390 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25324 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25258 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25192 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 25126 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 25048 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 24982 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 24916 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 24850 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 24784 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 24718 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 24652 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 24586 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24520 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 24454 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 24388 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 24322 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24256 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24190 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 19 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : GCTCAGTTGGAACAATGAATACATCTTGAAGTTGTAGCTCCCATTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCAGTGCTACAATATAGGTTCTATTAATACGTCTTTCGTCTTCGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATTTTTCCAGCGCGATGAGATACCCGGCATAGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCTTTTGCCGCCATCGACGCAGCCGACAGGGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATACTTAATTTATTCAGTTCTTCTTTATGCCAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATTTCGTACCCAAAAAATCGACCGCGTAACGGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATATAAATTTGTGTCTGCGTTATTCATTTTAGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATATAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //