Array 1 6070-5308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKY010000006.1 Listeria seeligeri strain FSL W9-0495 NODE_6_length_239248_cov_76.203620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6069 36 100.0 30 .................................... TTTCTTGTGAATATACATCTACAGTTCCGT 6003 36 100.0 30 .................................... TGAAAAAACTGGCGGTTTTGGAGGCTCATT 5937 36 100.0 30 .................................... CAGAGCTACATATCCACCCCAAACAATCGT 5871 36 100.0 30 .................................... ATTGAATTAATCCCGCATAAATCTGTCTAG 5805 36 100.0 30 .................................... TCCTCAGGATTTGAGTATTCCGGCTGATAC 5739 36 100.0 30 .................................... ACATAGATATCCAAGAGATTACAGAGCAAA 5673 36 100.0 30 .................................... CTTCTACATTAGATACAGGGTGTCAACAAG 5607 36 100.0 30 .................................... TAATAACGAAGGTATTCAGTGCGATATAGA 5541 36 100.0 30 .................................... AGAACTTCTTTCCCTTCGAAAATACCACCG 5475 36 100.0 30 .................................... TCCGCATATGTTGGAGCTTTCAAGTGATAT 5409 36 100.0 30 .................................... TTATTTTTAAGTAAAACTGGTAAGACACCT 5343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTGTTCCTCTCAAAAGGAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 102247-102534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKY010000005.1 Listeria seeligeri strain FSL W9-0495 NODE_5_length_242324_cov_65.883788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 102247 29 100.0 35 ............................. ATAAAAATTGCCATTGGCATTACTATCTGTTTTGA 102311 29 100.0 38 ............................. AGATGCGGATGCGTATAAGATTATGCTACGTATTTATC 102378 29 100.0 36 ............................. TATAAAAACATAGCTAACAAATATCCAGAGCATGCG 102443 29 100.0 34 ............................. TTTTTTTTAGATATATGCAACAAATGAATTTCTC 102506 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 99.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTAGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGTGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCTGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACATAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 108770-110084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKY010000005.1 Listeria seeligeri strain FSL W9-0495 NODE_5_length_242324_cov_65.883788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 108770 29 100.0 34 ............................. CAAATCGTCAGTAATTACGTAAGTTTTTTATATA 108833 29 100.0 37 ............................. TTACTTCTTCGGGCATGCAACTATTTTCATAAGTATC 108899 29 100.0 36 ............................. ATGCTTTCGGACTTGCGCGACAGTGGATCTATTGAA 108964 29 100.0 34 ............................. TTTGTTTGGGGGCGGAGCGGCTCTTATTCGCTTG 109027 29 100.0 34 ............................. ATTCAAATTGCAAGAATCGAATCGCCTTTTTCAA 109090 29 100.0 34 ............................. ACTGGTAACGGAGCAATAACACCAGATATGTATG 109153 29 100.0 38 ............................. AATGCAAATCGTAGTTCTACCGGTGGTAAAGGAGCTAT 109220 29 100.0 34 ............................. TAAATTTGCACATTTCCTTTTAACAGAGCATCAT 109283 29 100.0 34 ............................. TGGGGACTAGCGATTGCGGCGGGGTCTGTTGCGG 109346 29 100.0 37 ............................. ATGCTCTCCATAACAGCTTTTTCCTTTTTGAACTCTT 109412 29 100.0 34 ............................. CCATGCAAGGCGGAGGGCAAGAGCCGAAAATAAT 109475 29 100.0 36 ............................. CTTCTTTCTTGCGTGCAATTTCACGAGCTAATAACT 109540 29 100.0 37 ............................. TTAGGTTTTGATAGGACATATTGATATTGATTACTTC 109606 29 100.0 36 ............................. TCGGGACTCTCCTGCACTCATGTAACTTTGGAAAAT 109671 29 100.0 35 ............................. TGGGGTAAAATAATTGCCATGCGTCCGCTGCTTTT 109735 29 100.0 35 ............................. TAATCTTACAGCCATTCTTCTTGCGTCTTCCAGTT 109799 29 100.0 34 ............................. ACAGGAAATCGAGTTAGAAGCAACGAGACGGCAA 109862 29 100.0 37 ............................. TCTGGCGTACAAGGACTTGCAACCGGGACAAATTTCC 109928 29 96.6 35 .......................A..... CTCCCTTTCTGCTTGCTCGAACCAGTGCTTGGTTA 109992 29 100.0 34 ............................. GTAATACTTGTTGTTGTAAATTTAAATTCTTTTC 110055 29 86.2 0 ........C....C..A...........G | T [110081] ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.2 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATTTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 118700-119572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKY010000005.1 Listeria seeligeri strain FSL W9-0495 NODE_5_length_242324_cov_65.883788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 118700 29 100.0 36 ............................. TGGTGAATGTAAACAGGTTCGGATATTTCGAGATTA 118765 29 100.0 34 ............................. GTAATCACTTTATTTCCCAGTCTCGAATAACGAT 118828 29 100.0 37 ............................. ACTTTCTTATTTATTCTTATTCTTAAATCAGTTCACC 118894 29 100.0 35 ............................. TTTTACCTCGAACTTTAGCAACAATGAGAGTTCTC 118958 29 100.0 36 ............................. ACGACTGCCTTTTCCAGTTGAAGTCAATATCAAAGC 119023 29 100.0 37 ............................. AACGGTCGACGAAAAACCGCAAAATCATTATGGAACT 119089 29 100.0 36 ............................. CAAGGTACTCAATTCGTACTTGGTACTGGAACAACT 119154 29 100.0 35 ............................. TTTTCAATTAATGCTGTAGACATCATAGCTTTTGC 119218 29 100.0 37 ............................. AAAACTAAAACATCAGTTTTTGTAAATCCAACAACAA 119284 29 100.0 34 ............................. AAAGTTGTCATTGAATTCGCATATCCACTGAAAA 119347 29 100.0 37 ............................. TACAGAAAGGACTTTACTCGTATTTGATATTTTGATA 119413 29 100.0 36 ............................. CCAACTGAGTTTAACTTGGTACTGGTGCTATTGTTG 119478 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 119544 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 98.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCGAAAAACACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCCCGACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAATGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAGAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATCACTTGATAGCGAAAAAGCACCGGGATTATTCACTTGGTGGAGCGGGAATAAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //