Array 1 2747124-2747396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2747124 29 100.0 32 ............................. GAGGTGGAGCTCTGGGCGCTGGCGCACGCTGG 2747185 29 100.0 32 ............................. CCGCCGAGCCGCGGGTAGCGGCGGCTGACCGA 2747246 29 100.0 32 ............................. CGGCGCACGTCAGACAGGGAGTAGTGGGGTCC 2747307 29 100.0 32 ............................. AGGACCGTGTGTCATGGTCGGTCGCCTTCGGA 2747368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTCCCCGGTCGAGCGTCTGGGAGGTCTCCGCGGTCACGAGGCCCTCTCCTTCGGAGTGAGTGACGGCGAAGCCCCACGGTTGACGCGGCGCCGTCCCGCCGGCGACGCACCGAGGACCCGCCGGCAGGCCATGGCACACCGGATGGGCTCCGCGGCTTCGCTGCCACGGGGCGCAAGATTGGTGAGCGGGACAGTAGCGACCAGGTTCGCTCAGCGGAAGACCTCGTCCAGAATCCGGTCGGGGGTATACCAACGCGGCCCGTTTGATGGCTGTTTGCCGAGCCTTCACCACGACCCCCCGGAGACTCCCCTTCCGCATCGGCGGGCCCATTTCGGCGGTGGGGGGAGGGGCCGGTCAGTAGGGTCGGGGTGTGGTGGAGCGGAGGGGGGAGTCGAGGTGTGTCGACCGGTATGCGTTGCGATGGTTTGGCACGTTTCGCCGGAGTCGGTGAAGTTGCTTCAGAACGGCGCGGGCGGGTGAGAAAGCGGCAGGTCGGAGA # Right flank : CGCCACGCCCACACCCATCGCCGTCCCGCCGCCAACGGAGGCGGCATCGGCCTCTCCCCCTGGGATGAGCCGTCCGGCGTGAGCTGTACTGATAGCCCTGGAGATACGAACCGCAACCGCAACCGCAAGCCGAGTCCGCCTCCCTGTTCAGCCGTTCCCATCTCAGGAGATCGGTTCCACGCCGTACAGTCGGACGCGTGCACTCAGCGGTGAACAGAGCCCACGCCGGGCTGGTTACGGTTACCGGAAGTTCGGGCCAAGTAGGAGCGGCCCTGGCTGAGGCACTGGACACGGCCGGCTGGGTGGTCCGCGGCGTGGACCGGATTCCCGGCCGCTGGACGAGCGTCGTCGGAGACCTGCGAAACCAGCCGGTGCGACTGGCCGCATTGCAGTCGGCCGATGCCCTGGTCCATAGTGCCGCGCTGCACGCCCCACATGTCGGCCGCCTGGCCGATGAAGAGTTCCGAGCCGTGAACGTAGATGCGACCGCGGGCCTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2750529-2751472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2750529 29 100.0 32 ............................. ACCGAGCAGAGGTACCCGGCTCACAAGGTCGT 2750590 29 100.0 32 ............................. CGGCCTGTCATGTCCCGGAGGCGGCCGTCCGC 2750651 29 100.0 32 ............................. GGTGGTGGTCGAACTGGAGCGAATGCGTGGGA 2750712 29 100.0 32 ............................. TCGCCCTCGAATTCCTCCAGGACGTCGCTGCC 2750773 29 100.0 32 ............................. CCCGTCTACACCGTCGTCGTTCTCGCCCTGGC 2750834 29 100.0 32 ............................. AACTCTGACGACTCGACCACGAAGAAGACCGC 2750895 29 100.0 32 ............................. ATCACCTATTGGGCGTTGTCGATCCGGTACCT 2750956 29 100.0 32 ............................. CGGAAACGGGTGTGCTGGGTCGGGCCCTCCGC 2751017 29 100.0 32 ............................. TGGGCAATCCACTGCGGGTGCTCCGCCCATTC 2751078 29 100.0 32 ............................. GATCTGGACCGGCTCCCGCTGGGAGAGGGAGG 2751139 29 100.0 32 ............................. CACCAATGGGTGGTGGCGGGCGGGGTGTCGGG 2751200 29 100.0 32 ............................. CCGCGGTTGTCACCGCTCGGCCCCGCTCATCT 2751261 29 100.0 32 ............................. TGCATCGGCTGGGCGTCGACCTCGGCCCAGGT 2751322 29 100.0 32 ............................. GACCTTGAGGAGTACGGCGCCCTCGTCCGCAA 2751383 29 96.6 32 ...................A......... GGCGGACGCGGGTCATCAGGGTCAAGGCTCAT 2751444 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCGCCAGGGCGCCCGAGTCAAGGAGCTTGCGATACACCTCGTCCCGCGCGGAACCGTCCAGGCCGGAGGCAGTCACTTCCGATGCTTGCCGTCCCCTTCGGGAGCGCTTCCATCGGGGCTGGGCGGCTCCTGTGGCGGGGTCCACGGCTGGCCCGGGAGGTTTTCACCAGCGCCGCCGCCTTCTCCGCCGCCCCCGTCGCCCGCGTTGCGTGTGATCGGCTCGGCCATCGCGACCTCCAAGGCTGGCCGTAGGTAGTCAGCCTGGACTCTAGGGAAGTAGAGAGCATGCGAACAGCCCGAATTGGGCCGTTTGACGGATTCCCTCGGATGGGTGAGGAGGAACCGATATCGTCGGTGGCCGGAGCCGAGGGAGGGGGTTTGGTTTGCTGCACGATCCAGACCAACCAGAGCGGTTTTCGTCGTTTTCGACAGATTTGCCGGAGTCGGCAAAGTTGCGTGAGAACTGGTTCCCCGGCCGATGAAGCAGCAGGTCAGGAAGT # Right flank : CGTCAACGCGACCTCGGCCGCGTGCGGGTAGCCGAAACACCCATCGGCGCATCGGCAGAACCGGAAATGCTCGGCGCTTCTCTGGCCGCACTGCTGCCCACTCGATTCTTGACAAGATCCGGTTCCGCCCCGGCGTCCAGATACGCGCTCTCACATGTACGACCTCGCCTGCGAGCCAGCCGTCGTTAGGCTCCACCCATGACCGACTACGTACAGGTTTCAACTGCAACACCCCTACGGGAACAGGCCGTCGAGCTTGCTCAAGGCGCGATCAAAGGACGTCTAGCAGCCGGCACCCAGGTCATTGGGCCTGTCGGCTCCGTGTTCTGGCACCTGGGGGAGTTTGGCGAAGGTACCGAATGGCGGCTTCTGCTCACCACGACGACGGACAGGTACCCCCAGCTTGAGCAGTACCTGTTGGAACACCACCCTTGGGACAACCCGGAGCTGCTCGCCACACCGATCGTCCGAGGTGCGCAACGGTGTTTGGAGTGGATTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4827948-4827554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4827947 29 100.0 32 ............................. ATCGTTGGCGAGTACGTGTTCGACCTCGTGGG 4827886 29 100.0 32 ............................. CGGCACCCCCCTGCGGGAGGTTGCTCTATGTG 4827825 29 100.0 32 ............................. CGTCACCATGTCCGTAGGAGACCACGGCGCCG 4827764 29 100.0 32 ............................. GCTATGCGCCTGTACCCGCGGTTCTTGATGAG 4827703 29 96.6 32 ..............C.............. GGCACCACGGAGATGCAGGGGATCCTCACGAC 4827642 29 86.2 32 ............TAC.........A.... GAGATCGCCGGACGGTACGGGCCGGAGAGTCT 4827581 28 89.7 0 .............AC..........-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : AGCGCTGGGGCTGCCGTCTGGAGTCCTATCTCACCGACCCCCGGGTGGAACCGGATATGAACAAGTGGCAGATCCAACTCGCCTTCCGCCTCGCCGACTGACCCCGGCACCCGGCCCGATCTCTTGGCCTCCGGCACGGGTCGGGGTCGGGGGCGAGGTCCGGCGTCCGGCGTCCGGCGTCCGGCGTCCGGGAGAACGCGAAGGACCCCCGTCCAGTCACTGGACGGGGGTCCTTCTTCACGTGGCGGCGCCAGGATTCGAACCTGGGTAGGCTAAGCCGACGGATTTACAGACCTCTGGCGCCTGCACTCGCAAGGCTCCCTTGAGCAGGCACTTTCCCGGGCACCCGGTGCTCCGGTTCCTGCTCCGTCCACACGTCGTCCTGATCATGCTCTCGGTCGCGCTCTGGACCGCAGGCTTCACGAGAGGGAGAAATGTCCGTTCTTGGCAAAGTGGGTAAAATCCAGGGTCGCGCCAACTAACGTCCCTGGTCAGCTCCT # Right flank : GCACGCTTGCTCCCAGCACCAAGTCACCCAGGGACGATCCGGCTCGTGAAACCATCACCACGCAGCCGCTCGTACGCCTGCATCACGATGTCAGGCACTTCCTGCCTGATCATGAACCCCTGATCGGGGTAGATCAGCAACCTCTGAAGGGCTCCCACGAGCATGTCGATAACCAGGCGCTCATCCCCGATGGAGGCAAGGTAGTCCTCGAAGACCATCGGCGCGGACGCGCTGACGACGTCCACCTCGGGCCAGAGCTGGCGCGCCGTGGCATACGCGCGCCGCTCTTCGTACGGCTTGCTGACCAGCAGCACGGATGACACGTCAACACCGTTGTCTTCCAGCAAAGCCTTTGAGAATCGGATGTTCTCTCCAGAGTTGCGCGCCCGTGGTTCGACCAGCACGGAGGAGTCGGGCACACCAAGCTCAAGAGCGCGGTCTCGGTAGTGGACAGCTTCGCCCCGCGGCATACGCGCCGCCGTGGTGGGGCTGGTTGCTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6322136-6318048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6322135 28 100.0 33 ............................ GCCAACGCGATGGTCTCGTGGCTGAAGGGCCTG 6322074 28 100.0 33 ............................ TCTGGGCAGTTTTTGATGTGCGGATGGTGGGCG 6322013 28 100.0 33 ............................ ACGAGGCCGTCACCCTCAGCCTGGCCTACGACG 6321952 28 100.0 33 ............................ TCGAAGGCGGCGTTCATCGCCACGAGCGGCGCG 6321891 28 100.0 33 ............................ AGGGCGTGGATCCGGGCGTCGAGCCCTTCGGCG 6321830 28 100.0 33 ............................ GCGGCGCACTCGGGCTGTACGGGGCAGGTGCGG 6321769 28 100.0 33 ............................ TACGCGGCGAGCCCTTCGGCCTGCTCGCGAGCG 6321708 28 100.0 33 ............................ GTGACGTGGATGTACACCCACCGTGGCGAGGCG 6321647 28 100.0 33 ............................ TCGACGGCCAGACCGCCAGTCATGCGGATCACG 6321586 28 100.0 33 ............................ CAGCCTGTGCCAGGCGGTGAGGGTGATCTCGCG 6321525 28 100.0 33 ............................ CCAGGTGTCGAGCGCGAACCGTTCGACAGTGAG 6321464 28 100.0 33 ............................ ACACCGGCGCCGAAGTCCACAGTCACCACCACG 6321403 28 100.0 33 ............................ GTCGAGGCGGGCCAGGGCCGCCTCGGCGATGCG 6321342 28 100.0 33 ............................ ACGGGCGGGAGCCCTCGGCAACCACCGGCCGCG 6321281 28 100.0 33 ............................ ACCGCATCCGCGCCGCGTCGGCCCGCGCCCTTG 6321220 28 100.0 33 ............................ ACGGAGACACCGCATGACCAGCACCATGGAATG 6321159 28 100.0 33 ............................ TCGAGTGGACCATCGCCCGGGCCGCACAGATGG 6321098 28 100.0 33 ............................ GCACGTGGCACGGCGGTGAAGGACGGGTGGGAG 6321037 28 100.0 33 ............................ AGGCCGAGGTACTCGGCCCGGGCGGCGATGATG 6320976 28 100.0 33 ............................ TCCGCCGCGTTCTCCGGGGGCAGCGGGGCCCGG 6320915 28 100.0 33 ............................ CCGCCCGCCGAGCCCGTGTCGGCGGCGGACCCG 6320854 28 100.0 33 ............................ GCCTTGTGGATGTGCTCACGGATCCGGCCCTCG 6320793 28 100.0 33 ............................ GTGCACTACCTGGGCACCGAATACCGCAGCCGG 6320732 28 100.0 33 ............................ GCACTGCGCACTGCTGAGTCGGCCAAGCAGCCG 6320671 28 100.0 33 ............................ ACACAGGGCGAGCTGGCGCTCTACCCGCCGGAG 6320610 28 96.4 33 ........................C... GCGCCGCAGGAGGGGCAGGGTGCGGCGGCGGGG 6320549 28 100.0 33 ............................ TCGAACGCCGGCCTTCGTGCTGTCCCCCTGACG 6320488 28 100.0 33 ............................ AACCCGGCCTGCTCCGCCCAGACCAGGGGCCAG 6320427 28 100.0 33 ............................ CGGGTGCGGTCCCGGGGCATGGGTGCTCCGGGG 6320366 28 100.0 33 ............................ ACTTTCGGGCCGGTCGTCGTTAACTACGGCCCG 6320305 28 100.0 33 ............................ GAGCCTCCCATGGTCGAGATCTACGACAACAAG 6320244 28 100.0 33 ............................ CCCTTGAAACCGCAGACCCCGACCGGCCCCGCG 6320183 28 100.0 33 ............................ GGCTGATGGAGCTTTCCCACCCCCAGGCGCTGG 6320122 28 100.0 33 ............................ CACAGCTACCAGGACTAACACACGCACAGGGCG 6320061 28 100.0 33 ............................ TTGGCTCCAAGGGAGTGCCCAGGGGGGAACGAG 6320000 28 100.0 33 ............................ TCCCGCCGCCGACTGGACCAGTACGTGGAGCAG 6319939 28 100.0 32 ............................ ACCTGCCGGTCGGCCGAGCCGAGGGCCCTGGC 6319879 28 100.0 32 ............................ GTGCGCTCCGCTGTGCTGGTTGCGCGCTGCGA 6319819 28 100.0 32 ............................ GTTATGGATGTCAGCAGGAACCGCCACCGGAG 6319759 28 100.0 32 ............................ CTCGATGGTGATGTACGTGTGGTCGACCCATC 6319699 28 100.0 32 ............................ CCCTCTCAAAGCGGGACATCCGCCGGGCCGCG 6319639 28 100.0 32 ............................ GAGCCCGCACCAGTGACCGACCCTACCCCCGC 6319579 28 100.0 32 ............................ CAGCAGTCCGGAGAGCGCCGCGCTCGGGGTGG 6319519 28 100.0 32 ............................ CAGCCGCAGGCCTTGTTCCGCATGCTCCCGTT 6319459 28 100.0 32 ............................ CCCGCCTACGAGTTCGGGACGGCGGCGCACAC 6319399 28 100.0 32 ............................ GACAGGGGGGACAAGGTCGATGAGCTTGCTGC 6319339 28 96.4 32 .................A.......... CGCAGAACCATGACCGGGGGATGGTCCAGCGC 6319279 28 100.0 32 ............................ GCTGGAAGGTGACCGATCTGCGGGCGCGCCTG 6319219 28 100.0 32 ............................ GTGCGGCTCGATGAGGCCAACGTCCGCACCGA 6319159 28 100.0 32 ............................ TCGACGTTGACGACGACAAGGTGACCCGCGTG 6319099 28 96.4 32 .............A.............. TCCTCACCGCCGATGGTGATCTCCCCCGGGGT 6319039 28 100.0 32 ............................ GGGTCCGGTACGCCGATGGTCTGGCCGGGGAC 6318979 28 100.0 32 ............................ GCGGCGGTGAGGGCCCGTACGGTGCCCTCATG G [6318963] 6318918 28 100.0 32 ............................ ACCCTCGCCCGTATCCAGGCCGGGCTCGACAA 6318858 28 96.4 33 ...........................A GGCTGTCGACCGTGAGAACCTCGACGTGCTCTG 6318797 28 100.0 32 ............................ CCATTCAGGCACTGCCCGAAACGGGGTCGTCA 6318737 28 100.0 32 ............................ AGTTCCGCCGGTGGACACCGGAGGAGGTCGTC 6318677 28 100.0 33 ............................ GGCGACCGTGGCCATCTCCGACGACCCGGATGC 6318616 28 100.0 32 ............................ GTCATGTCGATGTCTTTCTTCGGCGTCCCGCT 6318556 28 100.0 32 ............................ TTCTTGGCGATGCGCTTCATGCCGTTGATGGA 6318496 28 100.0 33 ............................ TGGTCGGCGATCTCGTCGGAGATGGCGGCTTCC 6318435 28 100.0 32 ............................ AGAGACTCCGAGCCCATGAACATGCTCGTGCC 6318375 28 100.0 32 ............................ CACTGCTGGCCGAGAGGGAGGGTTCATGACCG 6318315 28 96.4 32 ....................T....... GTTCCGGCGATCAGACCCATGGCCGACGCTTC 6318255 28 100.0 32 ............................ GCGGGAACCAGTGAGCAAGAAACCCGGCGGGA 6318195 28 100.0 32 ............................ CTGGGCACGTCGCCGCGGGACAACGCCGCCGC 6318135 28 100.0 32 ............................ CAGGTGGCCGACTTCCAGGCCACGACCGCGAA 6318075 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.7 33 GTCCTCCCCACCGCGTGGGGGTGTTCCG # Left flank : AAACCCCGATACCTTCCCGATATCGTGCAGCCCGGCGCACAAGCCGACCAGGCTCCGCGCCCGCTCCGGCTCACCGGCCAGACCCAAGCCCCGCTCAATAGTCCTTCGCTGGCCGTCCGACAAGTAGACATCCCACAAATGCAGCGCCATGGCAGCGGCGTCAGCCAAGTGCCTGACAAGCGGGTATGGAGGCAGCCCCGGATCCAGCCCTCGCGACTTCGCCCAAATCGACTCATCCGCCACAGCCCTGGGCACACCCATTCCCGCACAACCCCTCACGCGATCGCCAGCCAATGAGTCAAGCAGACCGCACCGACAACGGGCCCCATCCACACCACAGACCGAAGCATTCCGCCCCTCACAGCACCCGCCATCACAACCACCAGCCCCCGCGATACCCCACGGGATCCGCAGCTACAGTGAGGAAACTGCATCCGGGAGGCACAATGCGATCAGCAAAGGCAAAGCAAAGCCACTCCTAACGTGCAGGTCAGAAAGGG # Right flank : TTTTCCTGCTGCTCTCCTCACCGCGTACGGACACGGACCAGCCCACACCGCACCCCCATCCTCTGCATAGAGCCAAGAGAGTGACGACGGGCAGCGGGATTCCCCTGGGACTTATCTGGGACTTCCGGCTGCATCAACGGCCATGACCATGAAACAACCGAAAGAACATTTGTGCAGGTCAGCTGCGCGGTACCAGCAAACACGGCAGGTCACAGACCTGACTGGTCTCTTCCGCGACAACTGATCAGGACGATCCGGCTCGGTGCACTACTCCTTGTCGCACCACCACCGCAGGAAGGGACGCAACCGCCTACGGCACTGAGGGAATGACGGCTACAGGCGCCCTTCACGCAGAGTGAAGACCCGGCTCGAACGACGGCCGGCACCGAACCCCGGCGCTCGCCTGAGCCCTCTTGCGCTTGACGCTCATATGACGCTCGTGACCCAGAATCCGCCGCAACCGCGCTCACCAAATAGCCTCTGACCTGCACTTATCTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7782905-7783314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 7782905 28 100.0 33 ............................ CAACGCCACCGCGGCCATTACTGCGTACCTGGC 7782966 28 100.0 49 ............................ CTGCGGACCTGCGGACCTGCGGACCTGCGGATCCAGCGGCTCGTCTCCT 7783043 28 100.0 33 ............................ ACGGTGTGATGGACCATCACTCCGTGCACCGGG 7783104 28 100.0 33 ............................ CCGCGGGCGACCCGCCGCCCGAGGCCGGGACGC 7783165 28 96.4 33 ...........A................ TCGCACTCAGCCTGAGGCGGGGAGGCCGGAAGC 7783226 28 92.9 33 ...........AC............... CGATTCAAGGGCGGGCAGGTCGATGTCGCCCCA 7783287 28 92.9 0 ...........A........A....... | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 97.5 36 GTGCTCCCCGCGGGCGCGGGGATGGTCC # Left flank : CCAGCGCGCCCGATTCCACGACGAGATCGACGATCCGCCGCCCGGAGAACGTCTCGCGAACCCCCTCCGCCCCCGCCAGCGCGACGGCCTGCCCGCCCCCACCGGCAACGGCGGCGAGAACGAGGGAACCCCGCAGCAGGAGCCGCCGCCCGGGATCCGACGGAAGGAGAGTCATGAGGCCACCTCGTCTCGGCCGCCCGGGGAATCCCGGGCACCTTCGGTTCACTGCCGAGTGTGGTGCTGCGGGGGGAGCACGGGGATCCGTCACACCCCTGACCGCCCCCGGAGTTCACCCCCTGAGGGGCATCGGGGGAGATGAAGCCGCGGAGGTACGGAACGCTCCGCCCGGCAGGGGAGGCCCTCGTATGATCGCCGGGGTGGGGCGCGGCCGGGAGGAGGGGGACTTGGGCAAGCTGATGTACCTTCAGCCAGTTTTGCCGGAGTCGGTGAAGTTGTATGGGAGGGGCGCTGAGCGCTGCCAAAGGGGCAGGTCAGGGAGT # Right flank : CCCAGTTCGACCTGGTGCGCGGCCTGACCGACTAGTACTCCCTGCTACCCGCAGGGATCCCCGCGCCGCCCCCACAACCCCCACCCCCAAGCGGTAGCGTCTCCGTGCCGCCCACGGCCACCTGGGCGGCGCGCGTGTGTTCAATCCGCCGTGATCCCCCCGTGCAGGAGACCCCGTGGACCGAGTCAGAACCCGACGCACGCCCCTCCTGATCGCCACCCTCGCCACCCTCTCCGCCCTCACCGCCGGGACCTTGTCCCCGGCCACCGCCGCCCCGGCCCCGCCCGCGCCCACCACCGAGGCCCTGCGGCCCGTCTCGCCCCCGCCCGCGAGCAACTCCGTCTCGACCGCGCCCGTCACCGCCGACGGCGACGGCATCGAGACCGCGCGCACCTCCCGGCCCGTCGCACCCGGCATGACCCTCACCTCCTACGACCGCCTCGAAGCCGACAAATGGCTCCGCGTCGACACCCTCTCCGTCGAACTCGACGGCCACGGCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 7791043-7791862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7791043 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 7791104 29 100.0 32 ............................. TTCGGCCGTAAAGGGCATTTGTTCCTGACGTC 7791165 29 100.0 32 ............................. ACGGTGGTGGCCTCCCGGCCGGGCGGCGCGAC 7791226 29 100.0 32 ............................. AGCGGGACCAGCCTCCGAGATGCCGTGGACCG 7791287 29 100.0 32 ............................. CGGCCCCGGGCGAACCCCGGCGTCGCGGTGGG 7791348 29 96.6 32 .................C........... CCGGTCGCGCCGGGGAGACTCGTCGGGGTGCT 7791409 29 100.0 32 ............................. CGGCCGCGCCGGAGGGCGCGGCATTTGGCGCT 7791470 29 100.0 32 ............................. CTGGGCGGCGACCGGCTGACCGCCGGGACGCA 7791531 29 100.0 32 ............................. AAGTTGACCGAGTGCGTCATGATGGAGGCATG 7791592 29 96.6 32 ............G................ CAGATGCCCCGCCCGGCCCCGGAGGCCGAGGT 7791653 29 82.8 28 .........A...A.......TC.C.... ACTCCCGTCCCAGCCGGGAGACGAACTT 7791710 29 82.8 32 .C.......A.G.A..........T.... GAGGGTCGCCTCCCCACGCCCACCATGGCGGT 7791771 29 75.9 32 ...T............T.......CCAGG CCGGACGAGCCCAGCGCCACCACGGCCACCAA 7791832 29 82.8 0 ...T.T.......A........CA..... | TT [7791853] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.1 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGTACAGCGAAGACGCCTACGGCTACACGTGGCTGCTGCTGCGCCGCGCCCCGGATGACGTGGCGTCCCTGGTGAACGACCTCCATGCGGTGAACACCCTGCTGGAGGAGTCGGGCTTCGGCCCCCACCTGCTGTGCTCCCTGATCACGTTCCACACCCCGGAAGCCCGCGCGCTGGCGCTGGTGTACCTGTACAAGAGGGGCACGTTCTACCCGTTCGCCCCGATCCCGGGCGGCGGTGAACGAAGGGACAACGCGCTGGAGTTGGAGGTGAGGTCGCTGCTGTCGGAGGATTTGAGGATGGAGGGGGAGCTGAACAGATGGTTTCCGGTGTGGGGGGCGCCGGGGTTGGAGGGGTGAGGGGTGTGGGGGTTTGTATGATCGGCGCGTTCTGGAGGAGGGGGAGCAGGACTTGGAGGCGTGCCCTATGTCGCTGATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCCTTGAGCGCTGACAAAGTGCCAGGTCGGGAAG # Right flank : CCGGCAGGAGTTCCGTCCTGCTCCTGCATCACTACCCGGGACCGAAGTCATCCCTGTACTCACGCGGGGATCTCCCGGGTACCGTTCGTAAGGGACGATTGAGAATCAGGAGACTGGTATGGCGCGTTGGAGTGATTACACCACCGGTCAGCGCATCAAGATCCTCCGAGGAAAGACCCTCCGGCAAACCGACCTTGCCGAGTTGACGGGGCTGTCGCTCCCCACGGTGCAGCAGGCAGAACAAGACAAGCGACTAACTCTGCAGACTCTCCTCCTGATCGCCAACGCCCTGGGTACGGATACCTCGGTACTGCTCGGCCAGCAGGGCCCTCGCAGGGGAATGGAGCAGGATGATCGTGCAACGGTCAAAGCCCTCGCACGTGCGGTGCACGACACTTCCGCTGGCCTTTTCCCCGACAACGTCACGGCACCACCGCTCCCCGGACTCGCAGAGACCGCGAAGCAGTGCTGGGATCTCTATTGGGACGGAAAGTACGTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 7796335-7798073 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7796335 29 100.0 32 ............................. TCCGGTGATCCGCATGACTGGCGGTCTGGCCG 7796396 29 100.0 32 ............................. CGGCCTGCGTCACACAAAACCGCAGGTCAAAG 7796457 29 100.0 33 ............................. CAGCGGGAGAAGGGAGGGGACTCGATGTGCTTG 7796519 29 100.0 32 ............................. CTGGCCGAGCAGCCCGCCCCGGCGCCGGTCTG 7796580 29 100.0 32 ............................. CCGGCCCTGACCGCTGAGCAGGCCCCCGGGAT 7796641 29 100.0 32 ............................. CCCGCCGACCTCCCCGCCTCCTGGTCCGGCGA 7796702 29 100.0 32 ............................. GAGTGGCTCCAGCTCCACACCGCCGAAGTCCT 7796763 29 100.0 32 ............................. CCGAGGTCCGCCAGGCGGCTCTTGCTGCCGCC 7796824 29 100.0 32 ............................. GCCCAGCGCGGGGCCGTCTTCGGGACGACCGG 7796885 29 96.6 32 ............................T CCGAGTAGTGGTCGGGGTCGATCGTCACAATC 7796946 29 100.0 32 ............................. CGGCCGGAGCCCAGCCGGTCGTCGGACGGTCG 7797007 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 7797068 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 7797129 29 100.0 32 ............................. GCTGGATGGCGCCGCATCGGCGGTGCCCTGCG 7797190 29 100.0 32 ............................. GGCCGCCCCCTCGACTCCCGCGGTCTGTCCAA 7797251 29 100.0 33 ............................. GACGATGTTCGAAGCCGGGGACGAAGTAGAGAT 7797313 29 100.0 32 ............................. GGTGTTGACGTTGGTCGACTGGCGAAGGCTCC 7797374 29 100.0 32 ............................. TGCCCACACTTGAGGTAAGCAAGCTCGTGGGG 7797435 29 100.0 32 ............................. TACGTACGCGACGGCGGCCGGGGCGGCTGGCG 7797496 29 100.0 32 ............................. CGTGCGGGGGATGTCCGACCCCGGGCGTACGG 7797557 29 100.0 32 ............................. CATCCCCGCTTCCGCCACCGAGACGACGCAGG 7797618 29 100.0 32 ............................. GTAGCCGTCCATGTAGCCGGGCATGCCCGTGC 7797679 29 100.0 32 ............................. GGCGGTCAGGTGCGGTCGGGGAATCCGATGCT 7797740 29 100.0 32 ............................. CGGCCCCCGGCCTTCCGGCCTCGGAGCCGTCC 7797801 29 100.0 32 ............................. GTGAACGCCGCCGTCTGGCCGTCGTTCTCCAG 7797862 29 100.0 32 ............................. GCGGTGTTCACGTCGATCCCGACCACGAACCG 7797923 29 100.0 32 ............................. CCGAGCTTCAGCCTCTTCATACGGCCCGAGCT 7797984 29 100.0 32 ............................. AAGTCCTCGCCGCCCGCGAAGAAGCCGTCCGC 7798045 29 86.2 0 .....................GA..G..T | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGGGAGTCCCCGGAGGAGGCGGCGGTCCGGGAGACCCGGGAGGAAGCCGGCCTGACGGTCACCGGCCGGGCACGGATCGGATCCCGTACCCACCCCCTGACCGGCCGCCACATTCTCTACATCGCCTGCACCACCGCATCCGGCACCGCCCATGTCACCGCGCCACGGGAGATCACCCACACCCGGTGGATCCCACCCCAACTGCTCGATACCTATGCCCCCGGTACGTACGAACCAGTCCGCCACCACCTCGGACTCCACACCTGACGAACGGACACCCCACACCCCGCTATGGGCCTCTGTCTGGCCGTGCATCTCGGGTGGTTCAGTGAGGAAGGGTGTGCGAGGGAGGAGTGGTGCGCGGCGGGCCTTTGTATGATCGGCGCGTTCCGCTGAAGGGGGAGCAGGACTTGGAGCCGTGCCCTATGTCGCTTATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCTTTGAGCGCTGACAAAGTGCCAGGTCAGGAAGT # Right flank : TGCTGTTCATCCTCGGCGCCAACGCGCTGTGGTCACGCGCAGGCAAAGACACCGCGCCCGACGCCTGGCGGCGTGGGGTCGCCTTCATACTCGATGGCCTGCGGGCTGGCTCGGCCCACCCGCTTCCCGTTGCTCCGCTGACGCCGCAACAGCTCTACGAGATCATGGGCGGCATCATCGGCACACGGCCAGGCACCGGCCAGTAGGGGCGTGCCCGTCAGGCCGCGAACTCTCGGTCTCGTTGGTTGGCGGCCCGATGCCCCTACTAGGCTCGGCCTGCATGACTCACACCGAGATGACGATCACCGCCGAGCTGATTCGGGACCTCCTGCGCGACCAGCACCCCGACCTGGCCGAACGGCCTATCGAGCTCGGCGCGCGCGGCTGGGACAACCAACTCTGGCGGCTCGGCGACGACCTCGCCGTACGGCTGCCCTGGGCGACCGAGTCCGCGGACGGACTTTTGCGCAAGGAACACACCTGGTTGCCCGCACTCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 7799448-7800328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7799448 29 100.0 32 ............................. CATTCGAGAAACGGCGGCGCCCCCTTCCCCTT 7799509 29 100.0 32 ............................. GGAGTCGAGAGCGCGCCCATGCCCATCGGTGT 7799570 29 100.0 32 ............................. AGTCCCGCCCGGCGTCGGCCGGGCGGGACCTG 7799631 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 7799692 29 100.0 32 ............................. CAGTTGATGGAGCAGTACGACGGGGTGGCGAA 7799753 29 100.0 32 ............................. CCGCCGTAGTCCTTCGCGTTCAGCGACCGGGG 7799814 29 100.0 32 ............................. GGGGCGACCCGCGACCAAGGCACCCTGGCCAA 7799875 29 100.0 32 ............................. CGCTCCATCGACGCCAGCGGCGACGAAGTCGG 7799936 29 100.0 32 ............................. CCTCGTTGAGCCCTCAGCCGTCGAGCCGGAGA 7799997 29 100.0 32 ............................. GGCGGCGCCGGAGCGGAGGCGGCGCCAGGCGG 7800058 29 100.0 32 ............................. ACTGCCGAGGAGGCACCGGATGAGCGCCACGC 7800119 29 100.0 32 ............................. CGGCCAAGTTCAGGCCCGCAACGAACCTCCCT 7800180 29 100.0 32 ............................. CACGGCTCGCCGTCGACGGACGCGACCCGGAC 7800241 29 96.6 32 ...........C................. TGGCCCACCCCGGCCTCTTCAGCGGCCACGGC 7800302 27 86.2 0 ..........--..........C.T.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCCCGCGAACGTCCTGACTGCGGACGGAACCTTCTGCGGCGTGATCGACTTCGGTGACCTCTGTGCGGGCGACCCGGCCGGGGATCTTGCCGCAGCGTGGATCCTGCTCCCGGATGATGCCTTCGACCGCTTCCATGCTGCCTACCGGCCCACCCTGGACGCGGCGACCCTGCGACGTGCCCGTGGTTGCGCGGTGATGCGTGCCCTCTCCGGCATCCTCATCGGAGACGCCGGCGTCCACGGCCGTCCCGGCGGCAAGGCCACGTGGGGCCCGCCTGCCCGCACCTCTCTGGAGCGCCTCCTCGCGACGGCCCACCGCTGAGAAGTGTGGGTGCGCAGGTACCGCAGCGGAGATAGGAGAATGCGGGGCTTTGTATGATCGGCGCGGTCCGCTGAAGGGGAAGGGAAGTTGCTGATGCGCTCTATGTCGCCTATGCCGGAGTCGGTGAAGTTGCATCAGGAGCGCGTTGAGCGCTGACAAAGGACCAGTTCAGCGAGT # Right flank : CACCCCATGCCATGGAACCCCGGGCGATTCCAAAGACGTCGACGCCGTGGCCCCTCAGACGGCCACGAGCCCGCAGACCGCATAATCGAACTCCCATTCCTCACCCCCTCCACAGTTCACCTCGGGTGCGCGCCCACCGCCATCCGTTCCGTTATTCTGGGCCCGCCGCGGTGGCCATCATCCGCACCCGCTCAAGTAAATCGCTCAAGTAAACGAAAATATGATTTTGGGCCGTCAATTCCTGAGGGGCGACTTGCTACCCGACCACCACCTGCCCCGCCCCGACGGTCACGGCGTCCGCCTGCCCCTGTCGTCAAGCCAGCGCGAGATCTGGTTCGCCCAGCTCAGGAACGGGAACAGCGCCGCCTACCGGATCGGCGAGTATCTCGAAATCCACGGGCCCGTACAGGCGCGGTTACTGGACGCCGCGCTCCGCAGAGCCGTAGCGGAATCCGAACCGCTCAATGTTCGATTCGGGACCGAAGCCGGGGTGCCGTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 7857345-7857958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020700.1 Streptomyces tsukubensis strain NRRL 18488 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7857345 30 50.0 11 .GAAGTGGGTG.....G.....A..G.G.A GGTCAGGGAGT T [7857365] Deletion [7857386] 7857387 30 100.0 31 .............................. CCGGACGTGCGTCTCGTACTTGGCGTACGTC 7857448 30 96.7 31 .............................A TGACCATCGACCCCGACACCATCCCCGCCAC 7857509 28 93.3 27 ............--................ TCCGGACCTCGTCGAGGTCCCAAGGGT 7857568 28 90.0 31 ............--...............T TCGACGGCAAGGCCGCCCGGGACGGGATGCT 7857627 30 96.7 31 .............A................ ACGTCCGGAAGGAGCTCGTGGACGTCGCCGT 7857688 30 96.7 31 .....G........................ GGCGGTGTCTCACCGGGCGCCGATGCCGCGG 7857749 30 76.7 31 ......G....CCC.......C...C...T GGATGCCGCTCCTGGTCGGGACGCCCGCCCA 7857810 30 86.7 31 T..........CCC................ ACATTGCGGCACTCCGGGGCGCACGGCTCGT 7857871 29 83.3 31 ...T......-C.C...............C GCGCACCTCTGCCGTTCGGTCACGGGGCTTG 7857931 28 83.3 0 ...........-CC.......C...-.... | ========== ====== ====== ====== ============================== =============================== ================== 11 30 86.7 29 GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Left flank : TGGCGGCGAGTCCTTCCACCTGGCAGGCGAAGGCGGGTGTGGCCTTGCCGATGTCGTGTACGGCGGCCAGCCAGACGGTCAGCAGCCGGGCGTCGTCCGCGCCGCCGGGCAGGGCGTCACCGACCAGTTTCCGGACGTTGGCGGGCAGCCAGTGGTCCCAGAGCAGCCCGGCGACGGCGGCGCTGTCGGCCATGTGCCGCCAGAGCGGCAGCCAGCCTTCGGTGTCCCGATCGTGCTTCGCCCATACGGACCGCACCGGTCCGGTAAGGCGCTCCCCAAGACCCATGCGTGTCTTTCCCGTTGAGTGCTGTGCGAGTGCTCAGGGAGATACCTACCGTCAAAGCGGTGGCCATGGCAGCAGATCGGAAAAGATGAGCGCGTTTGTGGCTGATCCGCTGGAATCGGGGAATGGAGACGCGCGCCACGTCTAGGATGCGAGCCCGCGCTGCCGGGTGGGTGGGGGTGTCTGGGTGGAGATGTCGGGTGCGGTGAAGTTGATG # Right flank : GCTCGGGACGATCGGCGCCGGCACCCGGCGTCACCGCTCCCCGCCCCCCGCGGGGCTCCCGCCCCGGAGGCGGTCGATCAGGGGTGAACTCCCCCTCCCCGTACGGCCGTACGGGCTCCGCCCGGCTCCTCCTGCGCCACGGACCCCGATTCGTGCGCCGACGGCTTCGGGGGCCTAAGCTCTGCCGTGTGCTCGACGTGAGGCGTATGTGGGTGCTCTGCGCTGTGGTCGCAGGAGGATCGGTCACCGCGGCGGCCGCCCGGCTGGGGTACACGCCGTCCGCCGTCAGCCAGCAGGTGGCGGCGCTGGAGCGGCAGACCGGGACGGCCCTGCTGGAGCGGGTCGGACGTGGGGTGCGGCCCACCGCCGCCGGGCGGTTGCTCGCCGAGCACGCCGTGCTCATCGGGCGGCAGATCGCCGAGGCGGAGACCGCGCTCGCAGATCTGTGCGCCGGACGGACCGGACGGCTCGTCGTGCGGTACGCGCCCGGTTCCGGCGCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.35, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //