Array 1 9918-10065 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQSM01000007.1 Staphylococcus argenteus strain 2588STDY5890732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 9918 27 100.0 37 ........................... GTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCT 9982 27 100.0 30 ........................... TGCGCTTAGCGCAGGCGCTCCTACTTTTCA 10039 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ===================================== ================== 3 27 100.0 34 ACTTTAGTTGTTAGGGGCTCTTATGCA # Left flank : CAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTATCAAATTTTTCATTGGAATTCTCTTATTAAACTTAATTACTATTTTATTTAAAGTACCTGTTGGTTACTTGATTACATTAAATACGCAATCACTCTCTCAAAATGTTGCAGAAAATATCATAAAAGTTTATACAGTACTAACAATCATTTTATTTGTTGTTATTCATGCAATCATTTTAATGGGTATCGTGCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGATAAAGTAAAATCAGCTGACAAAAACAAAAATGTCGTGACTGAACCAAAAAGTACAAAAGTAGAAAATGAAAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTAAAAGATGAGACTACAAAAACGATTACTTCAGATAAACCAGAAGACAATCAACCAAAATAAAATTTAGAGCCCCTTACA # Right flank : AGTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCTACTTTAGCTGGTTAGGAACTCCTTTCTAAAATAACTAAGTGCATTGTCTATACATAGTTGGGCAAATTCTATTAGAATAAATATTGTTAAACAGCGACCTCATTAATTAAACGAGAAACTTTAGAAACTGATTAGGAGTAACTACTATAACCATAGGCATCACCTCTTTATTAAGAGATTAGCCACCATCTATTCAAATTGCCCTATAAATATTTGAACATGAACATGTTTAAATATTTATAGTATAAGGTTTTTCATTTCGTTAACAACTCGATAAACAAGGGATAGAATGGTTGTCAGACACTGAATTACGGAATTATTTATTTGTTACAGATGATAAAGATAAACAATAGTACAAACATGATAAAATTGTGCATGTCTAAACAATCAAAAATGTACATTATTAAATTATCATTTCCATTCAACTAAGTGTAGACGATTCAAATAGTGTTAGTGTTGGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTAGTTGTTAGGGGCTCTTATGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 68483-68082 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQSM01000002.1 Staphylococcus argenteus strain 2588STDY5890732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 68482 36 100.0 35 .................................... CTATAATAGTTACTGCTTTTGTAACCGTCCATATC 68411 36 100.0 40 .................................... AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTAT 68335 36 100.0 36 .................................... TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT 68263 36 100.0 38 .................................... CATCAACTGACTTTTTAACTGTTTTAGTGAATTCGTCT 68189 36 97.2 36 ......................A............. TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 68117 36 86.1 0 .........A.......G....C.....G...A... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 97.2 37 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CTCATCTTGATGATCCCAATTGGCCTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGAAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAATGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 77598-77204 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQSM01000002.1 Staphylococcus argenteus strain 2588STDY5890732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 77597 36 100.0 36 .................................... TTAATTGCATTATCAAATGTATATGCTGGATTCCAT 77525 36 100.0 34 .................................... TGTACTTAAGATTTCATCAACTTTCTTTTGTACT 77455 36 100.0 35 .................................... CCGAATTTTGATTCTTTGTTTGTAAATAATGCTCT 77384 36 100.0 36 .................................... TTAAATCTTTGATTGCTCTTAGCTCTAGTTATGTAT 77312 36 100.0 38 .................................... CACGCTGTAGTGAAGTATAGAAACGGCATGAGTACAAT 77238 35 91.7 0 ..............................-...GT | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 98.6 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCCTCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGCGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //