Array 1 468129-468773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGLE01000003.1 Enterococcus sp. 4G2_DIV0659 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 468129 33 100.0 35 ................................. ATATGCAGGCTCAACAGATAGTGACATCCAACCAA 468197 33 100.0 35 ................................. ATATGCAGGCTCAACAGATAGTGACATCCAACCAA 468265 33 100.0 35 ................................. ATATGCAGGCTCAACAGATAGTGACATCCAACCAA 468333 33 100.0 33 ................................. TGCTAAGCGAGAGTTTAAAGCTTCTTCTTCTTG 468399 33 100.0 35 ................................. AATTTCCACATTTGGGAAGATGCGGCGGCAAGAAG 468467 33 100.0 35 ................................. AACAAATTAACTGAAAATGTTGTAAACGGCATGGG 468535 33 100.0 37 ................................. AGAATTGATGAAATATATGTACCTAGTGAAGTGTCAG 468605 33 100.0 35 ................................. CTAGAGTTTGGGGTTACGGTTGCTATAAACCCTGC 468673 33 100.0 34 ................................. ATTATCTGGCAAACTGCTAAAATATCTATAATTA 468740 33 75.8 0 .............C...A..G.CTA...AT... | A [468762] ========== ====== ====== ====== ================================= ===================================== ================== 10 33 97.6 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : ATGGTTATCCGCCGTTTTTATGGAAGTAGGTGGGAAGTATGTTGATATTGATAACTTACGATGTTGCAACAAGTTCAAAAAATGGTACCCGTCGTTTAAGGAAGGTAGCAAAGAAATGTCAAGACTATGGGCAGCGTGTTCAGAATTCTGTTTTTGAGTGTGTCGTTGATGCGACGGAATTGACTCAGTTGAAAAAAGAACTGATTGATCTAATTGATGAAGAGTTGGATAGTCTTCGGATTTATCGATTGGGAAATAATTATCAAAACAAAGTGGAGCACATAGGTGCCAAAGAAAGTTTTGACGTAGAAGCGCCTTTGATATTTTAGCAATGGCAATGTGGTGCGGATCTAAAGTGCACATGGAAATACTGGGAGATCCGCACCAAAAAATAGCTATTTTTCATTGATGGAGAGCTGTTTTTATCATTGAAATTTAATTTTAAAGTTGTTTTTTTGTGAAATAGCAAAAATATGTCGTGTATTGTTGCCAATTTCACG # Right flank : TGTTTATCGGAAAAAGCAAAGAGTAATGTTGCTGTGTTTCGCTCTATTTAGAGCTAAACAATATATTTACATCATGGTTAACATGATGACTCTTTAATACATTAAATGAAAGATCCGTCTGTTTAGCGAGGGGTCTTTTTTTGTTTGGATTTGCAGAGAAGAGGAGATAGTACAGGCTATATGGTTATAACCTGGGATTATTACTATACAAATACAAGACCTTTTAGAATCAGTAGAAAAGGTAGGGAGTATGGATACAGGGATTGTATGTCTGTTTAAAATAACTTATTCGTTTCTAGGAAGAGGATTTGTTTAGGTTTGGAGTTAAAGTAGGCAACTCAAGAGTGTAGAAATTCTATATATTATAAGAAAAAACACAATTTTATATAACGTAATAACGATTATTAACAAATAAGGTAATACAAAAAAGGATAAAGAAGAAGAATTTTAGGATATAAACTACCTAATAAATGTGTATGTTTTTTATTTGTTATTTATTT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 211266-210635 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGLE01000004.1 Enterococcus sp. 4G2_DIV0659 scaffold00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 211265 32 100.0 35 ................................ AGCTTCTACTTCTGGTTCGAGACCGATTTGCTCGT 211198 32 100.0 34 ................................ TCTGTGTCTTAGGGGTGCTTCAGTGCCTCTCTGT 211132 32 100.0 35 ................................ ATGAATGGATAAATACATTTCGCCAATGTGTTTAC 211065 32 100.0 34 ................................ TTATCCTTAATTCGATCAGTTTGCAGCATGTTGT 210999 32 100.0 35 ................................ ACCTGAAGCATCTGATATCGTAAGTCGTTTTGACT 210932 32 100.0 34 ................................ CCTTTTGTTAGCACATAATATTGCAAGTATTTTT 210866 32 100.0 34 ................................ TCGAAGGCTACTCTATGTGGTCCTTGTCGATCTG 210800 32 100.0 35 ................................ ATACTTAAATTTATTAAATAATCGCTTACCTCTAC 210733 32 100.0 34 ................................ TCCGCGCTTATGGTTCCTGTGGTTATCCTAGATG 210667 32 87.5 0 .....................ACC.A...... | A [210640] ========== ====== ====== ====== ================================ =================================== ================== 10 32 98.8 35 GTCTCACTCTTTATGAGTGAGTGGATTGAAAT # Left flank : ATACAAAATATGGTGATGGCGGGGCGGATATACTACCATTATTCCGCTTAAATAAGCGGCAAGGAAAAGCTCTATTAAAAGAACTAGGAGCGCCGGCGGAATTGTATTTGAAAATTCCAACAGCCGATTTGGAAGATAATAAGCCCTTAGTGGCTGATGAAGTCGCACTTGGCGTAAGTTATGATGAAATAGACGATTATGTTGAAGGAAAAGAGATATCAGAAAAAGCAAAAACAACGATTGAAAACTGGTATCTTAAAACACAACATAAAAGACATATGCCAATATCGCTATTTGATGATTTTTGGAAATAAAGATTACAAAAGAATTGTTTATTATTTGGTGCGAACCCCAAGTGCACATAAAAACACTAGGAGATCCGCACCAAATTTTTAAAGAAAATCAGCTGGAAAAAATGTTTTTCTCATTCTTTTATAATGTTTCAGGCTGTTTTGAGTGAAAAAGTATGTATTTAAGGGTGAAAGCCCTGCTTTTTCACG # Right flank : ATGCACTAGCCATGATTCCTATTTTTAATATATAAAGCTTTGATTTTGCAATCAAGACAGCATCTAAAAGAGAATCTTATCTGTAGTACAAAATGAAGACTGACACTCAGTCTTTTTTTAATACCGTTCTCACTAGCTTTAAATTTGTTAAAATGGTTAAAAAAAGTGTAAAATTGACTTAGTTCTTAAAAATAATCAATAAAATACTCTACAATCAACTTAAACTAGTGCGAAAGAAAGAGAATAAACAGATGAAAAATTGGTTTAGAAAGAAAAGACAAATTGACGATGTACCTTTCAATACATCTCATGAAAAAGCACCAATAAAAAGTACGGATACTATACGTATTCCAGCTAATATAAAAGGCTTATCAGAGCAAGAAGTACAGCAATTGTACAATGAAGGGAAATATAATAAAGAAGTAGAAGATTTATCTAGAACAACCAAGCAAATTATTTTAGATAACTCTTTAACCTTATTTAACTTCATCAACTTATTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 412193-411079 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGLE01000004.1 Enterococcus sp. 4G2_DIV0659 scaffold00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 412192 33 100.0 34 ................................. TACTGTTCTGGTACGTAGTAGAATGGTCATTCCT 412125 33 100.0 35 ................................. TTCGATTGTTTTCCCGTATATTCTATCTAGCGAAC 412057 33 100.0 35 ................................. ATGGTATTTATACCGAGCATGAAATAGTGCTTCTT 411989 33 100.0 34 ................................. TGCTTCTTGCGGTGCGATATTTGATCTAACTCTC 411922 33 100.0 35 ................................. CAAGCATAGCTTTCGCAGTCGTTTCCACGAAGCAG 411854 33 100.0 35 ................................. AACCTCCTTTCTATACACCTATTATACTATCGATA 411786 33 100.0 36 ................................. GTGTTCGACATTGATGATAGCTGATTGTTACTACTT 411717 33 100.0 34 ................................. TGGCAAAAAAACAATGTCTCTAACTTCTAGAGGG 411650 33 100.0 35 ................................. ACTTCTACCTGGTAGTCGAACCATTGAAACATACT 411582 33 100.0 34 ................................. CAGCCACTTTTGAGCTGTTTCTTCTGGAACTTTA 411515 33 100.0 34 ................................. TATATAACGAAGGTAGCGAACCAGCTGAACCACT 411448 33 100.0 35 ................................. AAGAATGTGTAAATGCTATCAGCATCAGCCATGCC 411380 33 100.0 34 ................................. CTGTTGCCATATAGCCAAATCCATCAATTCTTGG 411313 33 100.0 35 ................................. ATAATTAGTATTAATTACTCTTAAAGCTAGAGCAT 411245 33 100.0 34 ................................. AGAGTTTGACGAGCTAAAAAGTGAGTTTGCTACG 411178 33 100.0 34 ................................. ATATGCAGCATTATATTTGATCAAAGCTCGATTT 411111 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TATGCAGTAGTTATGACAAATGGTCAATCAGGACAAAAGCAGATGACAATCAGTGCTGTGCATGCAGGGAAAACATTTATTGATATTTTAGGAAATAATCCGACAAAAGTGACTCTAGATGATACAGGGGCAGGAACATTTCCAGTAAATGGCGGGGAAGTTTCCGTATATGTAAATGAAGAAATCATAGAGAATTTAGGTAAAGAATGTTAAAAAATCGTCAGGACCTTGGGGAAACGGATTTGTTGTTGAATAGTTTAAAAATACTTCGTGACTTCTGATGAAAGAATAACTATACTTTAATTATAATAGAAAATAAGTTGAAGAAGATATAAAGTTTTGGTGCGAATCCTAAGTGCACATGAATTTACTGAGGAATCCGCACCAAATTTTAGATGGAAATGGATTTTTTAATGCTGTTTTTCTAATCTTTTTCTCATTTTTTGGAAATATTAATGTGGAAAATAGCAAATATGTAAATAGTTTGTTACTTTTTCACG # Right flank : GAATTGGATGCTGTTGCGAATGTTTGGCTTCGTGTCTCACTCTTTATTAAAAACCACAATTATACAAACAGGACTCACCTATACATGAGTCCTGTTTGTATAATTATCTTTAAAATGTACACTAAAAAATTAGTTTTCAGATTTATTAGTTTTCAAGATATTTTTTGCTCGAATTCCGATGGCACCATAATAAATGGCGCAGGCCATAAAAAACAACATTGGCAATACTTGAATGCTCACGAAAGCGGTCTCCATAGCAATCATTCCAAATAATTGAAGACCATGATATTCCCAAAGTGTAGGTGTTAAATACCATGAGGAGATGTTTTTAAAAGAAGGTTGAAAAAGCATAAAATAAAAAATCATCAACGCTCCCCAAATCACTGACTGCATATACAACCGCTTATAACGATCGTTACCTGAATCAAGATCTGAAAATATGTCCTGCGTTGCGTTTTGGTTGTTTTCTGGTAAAAAGAAGTGAAAACCACTTCCTTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 623123-623495 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGLE01000001.1 Enterococcus sp. 4G2_DIV0659 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 623123 33 100.0 35 ................................. TTTGTTCTTGTTCCACGAATCCGCGAAAGGCGCAA 623191 33 100.0 35 ................................. TCAGAGCAAGTCAGTTACTTCTTTAGACGGTCAGA 623259 33 100.0 35 ................................. ATATTCTAAAGTTGCAGAACTAAAATCAATAATAT 623327 33 100.0 34 ................................. AACTCGTTTCCCTAAAGAATTATAGTAAGGGTAT 623394 33 100.0 36 ................................. AAAGGAACGCCAGCCGATAAAGCAGTTCCGGAAGGG 623463 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 100.0 35 GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT # Left flank : AACAATGGATGGATCAAGACCTACAAGTGAAGAACATTCTGGTTTTGAGAAGAGTTTGAAGAAAAAAGGTCGCTTTGGCCTATTGGGCGTATTAATATCACTTCCATTATTTTACGTGGATATGGATATTTTACATGGGCTAGGTTTTGTCTTGTTAATTGCTGGTATGGGCGTTTGGCTGTATTTTGCTGTTCAACGATTTAGATTCAATCATTCAAATAAGAAACAACTAAAAAGCAGCTTGGAAGAACATATGGAATATAAGAGTTTGGCGCAAAAATACCAAGTTTAAATATAATATAAAAAGATGTTTGTAATTGTTTTTTTAGTAAGTATTTAATGGTGCGGATCTTAAGTGCACATAAAATCACTGGAGGATTCGCACCACTATTTGCTGGAATTAAACGAAATAAACGTCTTTTTTCTCATTGAAATCTTATTTTTGGTGTTGTTTTTGTGGAAAAGGGGATTTTTTATTTTAAATATACTACTTTTTCACG # Right flank : TGACTCAGAACCAATCCTCATTAAACTCCTGTACGTCTCACTCTATTTAGAGTGAGAAAACAATTCTTTCATGTCATTTGATTTTGTATCATTAACTTAAAAAATTTATAAAGGAATTGAGTGTTCATACAAAGAAATTAAAAGGTATAATTAAAAAGAAATAACATAGTAATCTCTGCAAAAACAATCATTATAATTTTTGCAGAGTTAAAAAGGAGGATGACTATGATTCGAAGTGATTTAAAGAAAAAAGCGCAAGCTCATCTACATGGACATTATGGGAATTGGAGCGTCTTTGTATTGATTCCTTGTATACTATTATTTATCTACTTCTTTTTTACGTTTGCACTGTTTCAAAGTACTGGACCATTGGAAGATACAGATAGCTATCAGTCTTGGCAAGATGGCTATACACAGAATCCTAAATCAAATAATGACTATCGAAGTGGGTATGATGATGGCTATCTGGAAGGATATGACGAAGGATATGAAGATGGTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //