Array 1 78567-77995 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXP01000012.1 Bifidobacterium breve strain BR-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 78566 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 78498 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 78431 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 78365 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 78297 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 78231 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 78164 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 78096 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 78027 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.6 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CCGCACCGTCCACCACGGCAGGATGATCAGATTCGAGGGCGAGTCCTGGCGCAAGACCCACGCCCTCATGCAATAACCGACAACCCACAGGACTGGCCAAAGCCGAAACGGCCTAAAAACAACCGCTCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACAGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 169310-172228 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXP01000026.1 Bifidobacterium breve strain BR-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 169310 33 100.0 35 ................................. AAAAACCGCAACGCATGGCAGGTGGTGTCCGACAG 169378 33 100.0 34 ................................. TCCAGCTACCAGCAGTCGGTCGGCGGCATCGACA 169445 33 100.0 34 ................................. TTCCCCTCGCTGGCGGTCATTGCACGGCCTTGAT 169512 33 100.0 34 ................................. CACCACGACCTGCGCTCGCTGGCGGACGGTTACG 169579 33 100.0 33 ................................. CAGGCCAAGGCCGGCAACGCCATCGGCACGCCC 169645 33 100.0 34 ................................. GAAGTGGTGCATGCGGGCCCGTTGACGGACTGGG 169712 33 100.0 33 ................................. ATCGAACGCTGGCCCGACGACATCGTGACCACC 169778 33 100.0 33 ................................. TCAGACTGCTGGTTCGTCGGGGGCGAGGACGCG 169844 33 100.0 33 ................................. ATCGCACGCATGATCAGCAGCCTGCCCCTCAAG 169910 33 100.0 35 ................................. GCACGGAAAACCGACGTGAAAAATCTGATTAAACA 169978 33 100.0 33 ................................. AGTCGTATCGTACAAGATAATATTTTTCCCGGC 170044 33 100.0 34 ................................. CAACCATCGCTCATCCACTGTCGGCGGTAATCCG 170111 33 100.0 34 ................................. AGCACCGTGGTACGAGAAGCCGCATGGTATAATG 170178 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCCGAGGTTGACTT 170245 33 100.0 34 ................................. CCGTCGCCCACACTTGGCGTGCTCTGCCCCTGGT 170312 33 100.0 34 ................................. TGGCAGATGCAGGAAGCGTATGTGAGGGGCACGC 170379 33 100.0 35 ................................. CCTTAAGGAGAGGAGAACCCATCATGGAATCCGTC 170447 33 100.0 34 ................................. ACGTGGAACCATTTATCCACGTATGTGTAGTAGA 170514 33 100.0 35 ................................. TTGCTCCTTGTTCCGAACAGGATTTCTTTGATGCG 170582 33 100.0 34 ................................. AATAACGCACAGATTCTCAATATGATTCGCAACG 170649 33 100.0 35 ................................. ACGACATCGTGATAATCATCATACCAATTCACACG 170717 33 100.0 33 ................................. CTCGTACAATGGCCGTTTCTCGCAAGAGGGACG 170783 33 100.0 36 ................................. CCAGGCGGGCCCGGACGCCACAACGCAATCAAATTT 170852 33 97.0 34 .........T....................... CTGAATCAGGCTCATGGCGCTCTGACTGCGCCCG 170919 33 100.0 34 ................................. TGGACTATCGGCACCAATACATCCACGAGGCCGG 170986 33 100.0 34 ................................. ATCTGCGGGAAAATGCTCACATGAGCGGAACCCA 171053 33 100.0 33 ................................. GGCATGGGTGAAATACGCGCAGAACACGCAAAT 171119 33 100.0 34 ................................. ATGTCACGCCCGTATTCGGACTCCCAAGCGCCAA 171186 33 100.0 33 ................................. ATAGAGATTGTTGATTAGCCGCCATATGACGGC 171252 33 100.0 33 ................................. TGCAGATCGAACCCGTTGTACGTGCGCTCGTGG 171318 33 100.0 34 ................................. TCCGTTCCGGTCATCGCCAGCTTGTCCGCGATCA 171385 33 100.0 35 ................................. AACGACCTCGACACCGGCAAGGTCTACTACTGGAA 171453 33 100.0 34 ................................. CCGTTGTACCGTGGGTTGGGGTCGCGTGGACCGT 171520 33 100.0 35 ................................. ATACACTCGGCATGTATACAGTCTCATATCACCCT 171588 33 100.0 35 ................................. TTGAAGGTGCCGGGACGGTTGCGCGGCATGGGGCC 171656 33 97.0 34 ...A............................. TTCGCATGGATGCGGCAGACCGGCCGGCGCAATG 171723 33 100.0 36 ................................. GCTGTGGAGTCGAGCGGGTACATGGTCGCTTCATGG 171792 33 100.0 35 ................................. GGGATGGTCGTGATATCCACCCACCGGCCTGCCGA 171860 33 100.0 32 ................................. TGCTGGGACGAAATGCTCGAAACGACCAACAG 171925 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 171992 33 100.0 34 ................................. ACCCAGGCGAGCTTCGAGCCGCACGCCGCGCAAC 172059 33 100.0 36 ................................. CAAGTCGGGCAGGGCGTTGATGAGGCCCTGCGCCAG 172128 33 100.0 35 ................................. ATGATGCGCCGCGCCTTGCCGGCCGTCCAGCCCAC 172196 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 44 33 99.9 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCTGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTGTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TGCCTACAATCAGCAGGTCGAGGCGTTCAATGTTTTTAGTCAAGTCGGTGTTTCGTGTTTCGTCACTAATTTTTCGGTTTTCGGCATGAGGAGTGCCGGCCGGTGGTTTGTTTTACTGGTTGTCCGTCTTGCCGAACATGAGGGCTTGGCTGACGCGTCGGCTGGGGCCGGTGAATTCGATGAGGCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGATCGTCCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGACGTTCGTAGCTGCCGGCGATGATCTGGTAGAGGAGACGGGCCCCGTCGATGTCGAAGGGCACGTAGCCGAACTCGTCGAGGATGATCAGGTCGGCACGGGCGAGGTCCCTGAGCAGGCTGTCGAGGGCGCCGTCGCGTTTGGCCTTGCCGGGCTGGAGCACGAGCTCCGCGGTCTGTCGGAACCTCACGCTCCTGCCTTGCTCGATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //