Array 1 83114-81360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBX010000002.1 Streptococcus thermophilus strain ST1 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 83113 36 100.0 30 .................................... AAAGTAAACAAGTTTATCATCGCAGGTATG 83047 36 100.0 30 .................................... GAACCATTTTTGGATAAGTGCATTTCATTC 82981 36 100.0 30 .................................... AAAGTAGATAAAAAATCTGAATCGGTAATA 82915 36 100.0 30 .................................... ATGCCAGAGTATGTTATTCCAACCGATATT 82849 36 100.0 30 .................................... TGTATCGGTCTGTCAGCGATACGAGTGTCG 82783 36 100.0 30 .................................... GTCAAGGACGTGCCGTTCCAGTGGATGTCA 82717 36 100.0 31 .................................... CTATTTTGTGAAGAAGCTAGACGGCGTGGTC 82650 36 100.0 30 .................................... GTATATCACTGACGGACTCGCAAACGACTT 82584 36 100.0 31 .................................... ACTTGATATGACTGCGTTTCTAGAGGAACGA 82517 36 100.0 30 .................................... GTATGATAGATGAATAGACTTAAAGAGTTA 82451 36 100.0 30 .................................... CTTATGGTTATGCAAACGGTGGTCTAGTCC 82385 36 100.0 30 .................................... TATATTGATTGAGATGTGTTTATATCTTAC 82319 36 100.0 30 .................................... AAAATAGTATCGAAGATTTAAAACTCATTG 82253 36 100.0 29 .................................... GGTGTTTGATAAGTTGATTTTATCGACTG 82188 36 100.0 30 .................................... CTAAAAAGCGCAATGAAACTATCAATAAAT 82122 36 100.0 30 .................................... CCAAATTTGAAATTTGTAGTATACTAGAGT 82056 36 100.0 31 .................................... TTTGAGTCTTTGGTTATGGAAATTGTTGTCC 81989 36 100.0 30 .................................... GATGTCCTCTGTTCTCCAGTCGTAAATTGG 81923 36 100.0 30 .................................... TCTATATCATTCAAGTTAGTATTAGTAGTT 81857 36 100.0 30 .................................... GTCCACGTTTGGCACTAATGACAAGAACTT 81791 36 100.0 30 .................................... AACTGTATCCATTAATATAGTAGCATTTTT 81725 36 100.0 30 .................................... AGCACTTGATAGATACATTGATAGTCAGCT 81659 36 100.0 30 .................................... CTAGACAGTGGTATGTCTGACGCTTGGATT 81593 36 100.0 30 .................................... ATAGCTGGAGATAATTCAGAAGAGGGTTCT 81527 36 100.0 30 .................................... TAAGCCTTATACTGTATGTGAAATGTGTCA 81461 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 81395 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 233670-234497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBX010000001.1 Streptococcus thermophilus strain ST1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 233670 36 100.0 30 .................................... CAGCTAAATCTTTTTCAGCTTGAGCACGAT 233736 36 100.0 30 .................................... GCACTTATGGGCGACATCGTAATGATGTCG 233802 36 100.0 30 .................................... GCACTTATGGGCGACATCGTAATGATGTCG 233868 36 100.0 30 .................................... CTATGATGATTGATAAAATAATCAAGGCAC 233934 36 100.0 30 .................................... CTGAACTTAAAACTGACGTATCTAACATCG 234000 36 100.0 30 .................................... AACTATTTAGGTAATGTAGCTAGAGAAACA 234066 36 100.0 30 .................................... AGTCCAAAGGTATTTTCCTTTAACTAAAGT 234132 36 100.0 30 .................................... CACTAGGTTTTACAGCTTCTTCGACTGGTT 234198 36 100.0 30 .................................... GCTATAATGACTTGCTTAGTATGTTTAGTT 234264 36 100.0 30 .................................... AATCAGCAAATAACACTGACAACTATCCCA 234330 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 234396 36 100.0 30 .................................... TTGACAGAACTTTTGAAAGTATGGTTAGAA 234462 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 19952-20418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBX010000016.1 Streptococcus thermophilus strain ST1 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 19952 36 100.0 37 .................................... AAAGTTACATCGTTTTTTTCGTTTTTGAAGATTTTCC 20025 36 100.0 33 .................................... AGTTTAAAAAACTCGATACGATCTTTCTTTTTT 20094 36 97.2 36 ..C................................. ATTTTCCATGCTTTTGTCATAATTTCTTTTTTCATT 20166 36 100.0 37 .................................... CAAAGGTTGTTTATTGCTGTATTCGGTATTTTTTCTT 20239 36 100.0 37 .................................... CGTAAAATGGCATGTTCAATTTAAGTGAGTTATCATT 20312 36 100.0 35 .................................... TTTGTGCTGACGTGCCAACACTTTTAGCAAATTCT 20383 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 97.2 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : GACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACCTCCTAACTGAGAAAGTGTCACTAACTGATATTGCAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //