Array 1 28757-26968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVG010000003.1 Lactobacillus delbrueckii subsp. lactis strain FAM 19994 FAM19994-i2-1_scf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28756 33 100.0 35 ................................. ATAGCCGGCGCGGTCTAGCATCTTTTTCGCTTGCT 28688 33 100.0 34 ................................. CCATGTAAGCACGCTGAAAGCTCTGCGCTACCTT 28621 33 100.0 35 ................................. AGCAGACCAGCGGTCAAAGTATCCTTTTAAAAGAA 28553 33 100.0 33 ................................. TCATTAGTAAGCCCTCCTTGCAAGATCACATCA 28487 33 100.0 35 ................................. AATCGCAGTTGGGATGTTTAAGCACTCTATCAAAG 28419 33 100.0 35 ................................. AATCGCAGTTGGGATGTTTAAGCACTCTATCAAAG 28351 33 100.0 33 ................................. TGAGTTTGAGGGCAAACAAGGTGGCCACTCGAT 28285 33 100.0 34 ................................. TGATTGTGATCTTGCTTAAATGTCGTTTCCCACA 28218 33 100.0 34 ................................. AACGTAAGGCCGGACACATCCGGACCCAAGCGCA 28151 33 100.0 36 ................................. GTCATGGACCTTAAGGCATTGCCAATGAACATCATC 28082 33 100.0 34 ................................. AATGATTGAGAAGGAATTACGAAGAAGGGCGGGT 28015 33 100.0 37 ................................. ATTTTAAATACTCCTCTGTTAGATCACAGTCACGCTT 27945 33 100.0 34 ................................. TCGTTAACAGGGGACGGGGTGGCAGGGCTTTGCC 27878 33 100.0 35 ................................. ATCAAGTTTGCAAACCAGCAAATTATGTTAACGCA 27810 33 100.0 36 ................................. TAAGGCAAATCTTTTACACTCTTCGTTTTACTGTAA 27741 33 100.0 35 ................................. TACTTTGATTTTTGATTTTTACCATTTAACTAAAG 27673 33 100.0 35 ................................. CTTGTCATAACTGCCATAGAGCATAGGTCCACCGT 27605 33 100.0 33 ................................. TTTTGGCGTAAATCTTTGCTTACCACCCTCGTT 27539 33 100.0 36 ................................. ACATGGAACACATTTTGGATTTTTTTGGAAGCGCTT 27470 33 100.0 33 ................................. GTCTGGTGCCGCACTCAAGCTCCCGTAGTCCGC 27404 33 100.0 36 ................................. CGTGTCGCCATAGCCAAAGAGGCCAGCCGTATCGTA 27335 33 100.0 33 ................................. TACAGACAAGCCGGCTCTTACCCGCTTGCCCAG 27269 33 100.0 36 ................................. AGGAAGAACTCTATGAAGCTCGTAAAGCTGCAATTC 27200 33 100.0 34 ................................. TTCCCAACCAGGATTGACAATTTTGTCAAGATCA 27133 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 27067 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 27000 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 27 33 99.2 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTTGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGTCAAGCTCAGCATCCCCAAAACAAAAACTTAGTTGAGGAGAATAAACATATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCTCTGGACGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAATGCCGGGATGCGGCAGGACTCAGTCGCTGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 47889-48735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVG010000011.1 Lactobacillus delbrueckii subsp. lactis strain FAM 19994 FAM19994-i2-1_scf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 47889 35 75.0 38 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGC C [47902] 47963 36 80.6 35 A..T.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [47992,47995] 48036 36 94.4 41 ....C..C............................ GCAAGTGGTTACTGGGTATCTGATGACGGGAAACTGTTTGA 48113 36 100.0 38 .................................... GCGCCTTTGGTCAATCAGAGACGTTGTGAACTTCTTTG 48187 36 100.0 35 .................................... CTAATGGGTAACCCCGATAAATTTTTTAAGTGAAA 48258 36 100.0 38 .................................... TTAAAATTTATTTGATGGAAAAAGACAATGACAACCAA 48332 36 97.2 37 ..................G................. GAATAAAAATGACCACATTTGATATTTTTTGTGTCGT 48405 36 100.0 38 .................................... CGATCTGATCGCGTACCCCCTCCTCCTCAGTTGTCCAT 48479 36 100.0 37 .................................... AAAGCGACCAGGTTAAGCGAATTAAGAAACTCATAAG 48552 36 100.0 36 .................................... ACAAAAAAATGGAAAAATTAGACTATGCAAAAAGCG 48624 36 100.0 40 .................................... TGGAAAAAGTGCTATAGAATATATTTTTAGGGGGTAAAAA 48700 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 95.6 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : ATGGTTGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAAAAGGAGAACTAAAGTAAGCACCCAATAGCAGAGTATATTAAAATCCCATCCTAGCAATGCTAAGATGGGATTAATCAGTTTATGGGACTTTATTTACAGTGGAGCTTGACATTCTCAGCCCATGGTAAATAGGCTTCCAGACGTTGATTGTCTGATAATGACAGCTCATTGGGCAGCTTGTCTAGAAGATAGTTGATATATTTGAATTGATCCAAGCCATTTTGCTTGGCAGTTTCGAGTATGCTCATAATGATTGTCATGGATTTGGCGCCGGTACTGCTCTGTGAAAAGAGCCAGTTCTTGCGTCCCATGACGATCTCTTTGACTGCTCGTTCTGCTCTGTTATTGGACAGTTCAAGGCGACCATCTTTTAGGACGTTCATGAACTTGTCCATGTGCTTTATGCAATACTGGAAGGCTGTCCCTAGCTTGCCGGAAGGCAACACGGATATTGATTTCTTGGAGCACCAGTCGGAAAACTTCTCTAGCAGAGGTCT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 163-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVG010000032.1 Lactobacillus delbrueckii subsp. lactis strain FAM 19994 FAM19994-i2-1_scf32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 163 36 100.0 38 .................................... AGAAAAAATAGGAGACAAAAAATGGAAATTGAAAAAAA 237 36 100.0 43 .................................... ACAGCTTGCTAGAATAGAGGTTAAAATGAAAAGTATTAGTTCA 316 36 100.0 37 .................................... TAGATATAAAGTTAAGAAAGATGTGTACAAAAATGAC 389 36 100.0 34 .................................... GGAACAAAAAAATGATTAGTAGCGAAATGATTAA 459 36 100.0 35 .................................... AGTAGGAGGAAAAAAATGGATTTAAAAGATGTAAT 530 36 100.0 41 .................................... GCGTCAGTTAAAAATGGCAGCTCTTCGACTACTTGGTCACC 607 36 100.0 45 .................................... ACGACCAACCGGTTGCCGTTCTTCAGGTCGATGAAGCACGCTAAG 688 36 100.0 43 .................................... ACAGCTTGCTAGAATAGAGGTTAAAATGAAAAGTATTAGTTCA 767 36 100.0 37 .................................... TAGATATAAAGTTAAGAAAGATGTGTACAAAAATGAC 840 36 100.0 34 .................................... GGAACAAAAAAATGATTAGTAGCGAAATGATTAA 910 36 100.0 39 .................................... TAAAATCTATGTCGGTGATGACAAGATGATTCACTTTGA 985 36 100.0 41 .................................... TTGGAAGTTGAAGTTAAAACCTCAAAAGGCCAATTCGTTGG 1062 36 100.0 39 .................................... TTCCATCGTAGGAGTTCATCTAACCGAGCAACAAAAAGA 1137 36 100.0 40 .................................... TGAATACGAAAAGAGTTTTGCAAATAATGAGACTATCAAG 1213 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 15 36 100.0 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CTTCGGCAGCTCGAGCGGTACGATTGGATGTTCAGTCATAATATCGTGTTCCTCCGTATTCAATTGTTAAGAACAGTATATGACTATTGACCAGGGGTTGATAGATACCGCGCTATTGGGTGCTTACGAACTAAAAATGATTGAATTGTTTTTAAACCGTGAG # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTTTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGAGACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //