Array 1 429014-430080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026984.1 Pectobacterium parmentieri strain IFB5605 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 429014 29 100.0 32 ............................. CGCTCGGCAGCAGCAGGCTCTATATGCTGGAC 429075 29 100.0 32 ............................. GCGCATCGCAAGGTCGAAGTCTGATTTAGTGT 429136 29 100.0 32 ............................. CAGTTGGGCCTCAAGTCTGGAGGGGATGAATC 429197 29 100.0 32 ............................. GACATGGAGAACATCAAGAACCTTGTTTGGAT 429258 29 100.0 32 ............................. AGACTGCTTAACTCTGCTGCCGTCTGGCGCTG 429319 29 100.0 32 ............................. AGCGGCACCGATTTGCCCTGACATTGACGTGT 429380 29 100.0 32 ............................. GTTCGTGGATCATTCGCCACTGGTGGATACCT 429441 29 100.0 32 ............................. ATCGCAAATAAGCCCAATAGGTCGATTCATTG 429502 29 100.0 32 ............................. AAATCGTTATCAGGGACGCCCATGTTTACGGA 429563 29 96.6 32 ............................T GGTTTAATGGCGAATCGGTGCCAAGAAAGGAG 429624 29 100.0 32 ............................. GCTGCAACTGAGTTTGCAGATCAAAGAAACTT 429685 29 100.0 32 ............................. CCTCCGAAGAGGCTATTCATCTGGTTTTAATT 429746 29 100.0 32 ............................. TCGTATGTATCGATCGCTGATAACAACACGTC 429807 29 100.0 32 ............................. GGGGCTGGTGTGTTTGGAGAGGCGGGGCCAGA 429868 29 100.0 32 ............................. GTTAGATAGCTCTCTCGTAACGGAGGTGATCG 429929 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 429991 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 430052 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 431950-432649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026984.1 Pectobacterium parmentieri strain IFB5605 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431950 29 100.0 32 ............................. CCCTCTCCGGAGGGTTTTTTTACGTCTGGAGA 432011 29 100.0 32 ............................. GAAATCAGAGCCCTTGGTGGAGATGGGAGCGC 432072 29 100.0 32 ............................. CAGGTTCGCGGTTTGCAAGAATACGTCCGCGA 432133 29 100.0 32 ............................. CGCGATCCTGCCGTTCAGGTAATGTCCTACCG 432194 29 100.0 32 ............................. GGCGCTAGACTGGCTAAGACTGGATTCATCAA 432255 29 100.0 32 ............................. GTTTTTTTGATCTCTCGGAATCTACCAATGCA 432316 29 100.0 32 ............................. TCCTGTTGAGTTAACGCTATGGATTTAACTGA 432377 29 100.0 32 ............................. GAACATCATCCAACCATATTTTTTGGCGATAT 432438 29 100.0 32 ............................. CATGAAAGACAGATACCGTGATTTATCTAGAA 432499 29 100.0 32 ............................. GGCGGAAAAGCCGCATTGCCGTGGCAAGTTGC 432560 29 100.0 32 ............................. TTATTGAATGTTGTGATTGCCGGAATCAGATC 432621 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3953119-3955181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026984.1 Pectobacterium parmentieri strain IFB5605 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3953119 28 100.0 33 ............................ CGCAGGAAGAATCTTTTATAACATAAACAGAAT 3953180 28 100.0 32 ............................ TTAACTTCATCGAGCACGCCCAGCAGTTTAGC 3953240 28 100.0 32 ............................ CTAAGCACGGCTATTAATTGCCTTATTCCAAT 3953300 28 100.0 32 ............................ TCTGAAACGCTAAACGGCGTAACGTGCACTAA 3953360 28 100.0 32 ............................ TTAGCGACTGCAACGCTAATTAATAATAGGAT 3953420 28 100.0 32 ............................ GTTAACAGTAAATTCACCGTCACGGTAATAGT 3953480 28 100.0 32 ............................ TTCCACGTGACCCAATATAGAACTATCAGAGT 3953540 28 100.0 32 ............................ TATGCTAACGGCGCTCGTACTCTCTTGGATTT 3953600 28 100.0 32 ............................ AGTGCTGGATGACGTCACGCTCGACGTTATTC 3953660 28 100.0 32 ............................ GTATATGATGACCATAAAGGCGTGTTAGAAGT 3953720 28 100.0 32 ............................ ACGGGTCGTATGCAAATTCGTTAAGTGAGTCG 3953780 28 100.0 32 ............................ GACATGCAAACCCGTCAGCGTGAAGTTGCTGC 3953840 28 100.0 32 ............................ ACCGTTTCCCAGGCTGTTATGCAGTTAATTAA 3953900 28 100.0 32 ............................ ATAACGGCATGTGCCAGATCAACGGCATCTGA 3953960 28 100.0 32 ............................ TTGGGCAATGGGCAGTGCGCCCGTTGCTCGTC 3954020 28 100.0 25 ............................ TAGCGCCCCGCTGCCTGCACTAAAG Deletion [3954073] 3954073 28 100.0 32 ............................ GCTCATCACTGCGCCGTGTGCGTGTTTATCAA 3954133 28 100.0 32 ............................ ATCACCCTCTACCGCCGCCGCGACACGCACCA 3954193 28 100.0 32 ............................ GTTTATCTCGACGGGCATTGTATCCTTTGTAT 3954253 28 100.0 32 ............................ TCTTACGCGTGAGGCATACATTGATATCCTAT 3954313 28 100.0 32 ............................ ACAGTCTAGTACTGACCTCTCCGGTTGAAATG 3954373 28 100.0 32 ............................ CTCTTTCGACCACACTGAATACGCCAGCGATG 3954433 28 100.0 32 ............................ GGCTGCGTTCTCCGATACCAGATGACCTGAAT 3954493 28 100.0 32 ............................ AAGGTGCGAAAGCCACAGCGTCATGAAACCAA 3954553 28 100.0 32 ............................ TTTTGAGGCCAATCACATTCTGAAGCTTAAAT 3954613 28 100.0 32 ............................ AGCGCAGAACCACCCACGCTAACCCGCGAATC 3954673 28 100.0 32 ............................ ATAAATTACGCCGGTTTGAGTCCTGACAAAAA 3954733 28 100.0 32 ............................ ACGGATGACCGAGTGACCGGCGACGAATACCA 3954793 28 100.0 32 ............................ GAGAGCGGAACGATGTGATCCACCGCCCTGTC 3954853 28 100.0 32 ............................ AGTCGGCTCAATTGGCACCAGCGCCCAACCTT 3954913 28 100.0 32 ............................ TTGCCTACATACCATAAATTACGTCTAGCTGA 3954973 28 100.0 32 ............................ CGGTAAGCAGATAAAAATTTATGGCGGAAAGG 3955033 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 3955093 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3955153 28 85.7 0 A...........GC..........A... | G [3955178] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3972397-3973990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026984.1 Pectobacterium parmentieri strain IFB5605 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3972397 28 100.0 32 ............................ AGCTAAACGCGGCGGTGTACTCCGCTATCGAA 3972457 28 100.0 32 ............................ CTGTATAAACATACATACCCCTAAAAGCTCCT 3972517 28 100.0 33 ............................ CACTGCAAATTATCCGCTTTCAGGTTTCGCAGG 3972578 28 100.0 32 ............................ GCGTTTAGCTGGTGGAACAATTTAGCGTTAGC 3972638 28 100.0 32 ............................ TCATTCAACGTGCTTGACTATGCCCTGCGTGT 3972698 28 100.0 33 ............................ TAGAGGAAGATTCTAGCCTTTTAGATATCTTGG 3972759 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCAGAAACTCGT 3972819 28 100.0 32 ............................ TTCATACGCATCATTGAAGCTGTGCAGGGCAA 3972879 28 100.0 33 ............................ TAGATAATAGGGGCTTATTCTTTGTTGAGGTTA 3972940 28 100.0 32 ............................ TAAAGTCGGGCAATCTGTTTACGTGCCTTTCG 3973000 28 100.0 32 ............................ ATAGCAAAATCTAACGCCCGCGCATCCATAAA 3973060 28 100.0 33 ............................ CTACAGTAGTATCACTGTAGCAACCATCGCCCC 3973121 28 100.0 32 ............................ ATGATGACGAGGCAATTTTTCTTGCGCAGCTC 3973181 28 100.0 32 ............................ TGGGTAATGGTCGCTGTCACGGTCGCCTCCGT 3973241 28 100.0 32 ............................ CACAATTCCAATTCATCCATGATGTGCATGAT 3973301 28 100.0 33 ............................ TCATTATATAATCACTATCCGTGAATTTCATGT 3973362 28 100.0 32 ............................ ATGTAAGCGCTAACAATGTTATGGTGCGCTAT 3973422 28 100.0 32 ............................ GTTATCAATATTTATTCCGATGGCGCATTCAC 3973482 28 96.4 33 .............T.............. CGCCGCCCGATACTGACGTTGCGCCGCTTTCGT 3973543 28 96.4 32 .............T.............. GCTGATTAACGATAAGTGGATGGAATTTCTGA 3973603 28 96.4 32 .............T.............. GTGGAGGGCGGGTTTTACGGGTCGCTAATTGC 3973663 28 96.4 32 .............T.............. GTGCACCGAATGTGGCTGTCGTGAAACTCGGC 3973723 28 100.0 32 ............................ GTTAAATTCCAGCGTTTGGTATTGGGCAATCA 3973783 28 100.0 32 ............................ AGCCACCTCTGCCAGTTTTCCGTACAGCGTGA 3973843 28 96.4 32 ..C......................... AGAATGGAGCCAATCACGTTTCAGTACAATAT 3973903 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 3973963 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGTTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //