Array 1 1738-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXY01000004.1 Campylobacter fetus subsp. testudinum strain wqj7 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1737 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 1672 30 100.0 35 .............................. TTAAAATACCTTGACAAGTCTAAAATTTTATACTA 1607 30 96.7 36 .............................T TTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 1541 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 1474 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 1409 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 1342 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 1276 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 1211 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 1146 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 1082 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 1017 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 951 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 885 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 819 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 754 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 688 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 622 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 556 30 100.0 35 .............................. TTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 490 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 424 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 357 30 100.0 35 .............................. TTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 291 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 225 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 154 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 89 30 90.0 0 ......................A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 26 30 98.9 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAAACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTTTATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : TAGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACAGTTTGCTAATCACAAAGCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 2617-3627 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXY01000039.1 Campylobacter fetus subsp. testudinum strain wqj7 contig00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2617 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 2682 30 100.0 35 .............................. AGAGTAAGTGGAGTCTGGTTTAGCAACACAAGAAT 2747 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 2812 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 2877 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 2942 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 3007 30 100.0 36 .............................. TTATAGAAATATTGGAGATAAAATGACAATTAAAAT 3073 30 100.0 36 .............................. TTTACTTTCTCTCCAAACTCTTTTAACTTATCACTA 3139 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 3204 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 3269 30 100.0 36 .............................. TAATTACAATCTAGTAAAAAGCGTAGAAATTGTGTT 3335 30 100.0 36 .............................. CCATCGCTAAACGCCCCACCCGCGGTAGTTAGGTGA 3401 30 100.0 35 .............................. ATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 3466 30 100.0 36 .............................. AGCAGATAGCGCAGTAGATAAATTTAAAAATAGCTT 3532 30 100.0 36 .............................. CAGTGATGATACTGTATATACCCTTATAACAAATGG 3598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 100.0 35 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : ATTTATATTTGCTGATTGCCAAAGAGTAAGATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 3771-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXY01000025.1 Campylobacter fetus subsp. testudinum strain wqj7 contig00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3770 30 96.7 36 ...............G.............. TAAAAAAGCATAGCTAGGGCGTCTAACTCATCCGGG 3704 30 96.7 35 ...............G.............. TGGGAAGAAAGAGAGTATTATTCTTCTCGTATAAG 3639 30 96.7 35 ...............G.............. AGCTGACTTGATAGCTAGTCGTATTAAAAAAAGAG 3574 30 96.7 34 ...............G.............. TAGATTGATATTTGACGGGAAAAATCTAAGCACA 3510 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 3445 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 3379 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 3314 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 3248 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 3183 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 3116 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 3050 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 2984 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 2919 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 2852 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 2786 30 100.0 36 .............................. ATATCTTTTACATTTTTACCATCTGTTGCTAAAATA 2720 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 2656 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 2590 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 2524 30 100.0 35 .............................. TTTTTTATACTATTTATAGAAGCTTTTTGAGCATA 2459 30 100.0 36 .............................. AAGTTCATTCGAGCGATATTAGAGCTCCGCTTCCAA 2393 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 2327 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 2261 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 2195 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 2129 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 2063 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 1997 30 100.0 36 .............................. CGTTCAGCTTCCATTGACAAACCACCTTTTAAAATA 1931 30 100.0 36 .............................. TTTCTTGCGAGATCATTTACGTGGCATGGGCTTATA 1865 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 1799 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 1733 30 96.7 36 ...............G.............. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 1667 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 1602 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 1536 30 100.0 35 .............................. TTGTACACAGGGTATGTAAGATCTGTTGTAATCTC 1471 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 1405 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 1340 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 1274 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 1208 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 1142 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 1075 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 1009 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 943 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 877 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 811 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 745 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 679 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 613 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 547 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 482 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 416 30 96.7 36 ...............G.............. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 350 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 284 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 219 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 153 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 87 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 57 30 98.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATGAGGCAAGAAAAACAAAAGGAGGTTAGAT # Right flank : CCCCAAAGCTGCTACCAAAAATCCATAACCGATAGTAGTTTGCTAATAACAAAGCTCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.91, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //