Array 1 1361846-1358697 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018676.1 Helicobacter cinaedi strain P01D0000 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1361845 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 1361779 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 1361713 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 1361647 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 1361581 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 1361515 36 100.0 30 .................................... GGCGTGTAGAAAGGTAACTTTTCAGTGATT 1361449 36 100.0 30 .................................... CTCGTTTGGTTCTGGGTCTCTCTTTTCTCT 1361383 36 100.0 30 .................................... TTCTGCTATCTGACACCATAGCGGTCAGTA 1361317 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 1361251 36 100.0 30 .................................... ATCGCCACGCTGTAATCGTTATCTGCCCCT 1361185 36 100.0 30 .................................... TTTAAAGATTGTAGGCACAAAAGGATTTTT 1361119 36 100.0 30 .................................... GCAGAAAACGTCGATTTTTTATTCGCAGAC 1361053 36 100.0 30 .................................... CTTGGACACTCACATGCATACATCATATTT 1360987 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 1360921 36 100.0 30 .................................... TCAAATTCAAGGCATATTGTGCCGGTAGCA 1360855 36 100.0 30 .................................... ATATTTCCTTTTATGCTTGTGTATTCAATA 1360789 36 100.0 30 .................................... CGGAGCTCAGTGGTATCGGTATGCAGGAAG 1360723 36 100.0 31 .................................... ACCTTTTGCTCCCATATATCCGAGAACACCA 1360656 36 100.0 30 .................................... CAGGCATTTGATGTTTCCGTTTTCTCGTTG 1360590 36 100.0 30 .................................... TGATAGCACACTAGATTCTGCTAAGTGCTA 1360524 36 100.0 30 .................................... GGTATGGATTCTATAATGACGACTTATTAT 1360458 36 100.0 30 .................................... TAGTCAAACATGTCAAGCCCCCTCTTTTGC 1360392 36 100.0 30 .................................... CCCGGAGCTTAGCGGAATCGGAATGCAAGA 1360326 36 100.0 30 .................................... GATTGCTCGTGCGACACTGCATAATTTTAG 1360260 36 100.0 30 .................................... TCCCCAGCGATGTTCTTCCATATCTTTCTC 1360194 36 100.0 30 .................................... GTCTGCCGCGAAAATATGCAAGGAAGCGAG 1360128 36 100.0 30 .................................... CCATTGCTTCTATTATCATATATGCCTTGT 1360062 36 100.0 30 .................................... CCGGCAAGGTTGAAAACAATGCTGGAGGCA G [1360049] 1359995 36 100.0 30 .................................... GTCCGCATTGCTTTTCTTTTGAAATAAGTG 1359929 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 1359862 36 100.0 30 .................................... AGTTTCATTTTGCGGATTTACCTTATAAAA 1359796 36 100.0 30 .................................... ACCCCTATTTCACACATCTCGGCGTTTCTC 1359730 36 100.0 30 .................................... TCATTTGCCCTAATTAATTCTACGCTGTCG 1359664 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 1359597 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 1359531 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 1359465 36 100.0 33 .................................... AAAGACTTCTAGCAGATTCTAATTTTGAGATAA 1359396 36 100.0 31 .................................... CCAAAAGATTTAAAACACGCGACCCGATAAG 1359329 36 100.0 30 .................................... TTGATGTCGGTGCTTCCTTATAATATGTAT 1359263 36 100.0 30 .................................... CAGCTCGGTTTTAATGCGATTGCTCCAATA 1359197 36 100.0 30 .................................... CTAAAAATAGTGAACAGCAGAGACAGTATT 1359131 36 100.0 30 .................................... GGTCTCGGCCAAGCGCTAGAATCTCAAATG 1359065 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 1358998 36 100.0 30 .................................... TTGGAGCTATCATCATACAAAGTTTGTTGA 1358932 36 100.0 30 .................................... CCAGCGCCATCAATCATAAATATCGTATTC 1358866 36 100.0 31 .................................... ACATTTGAATAATCTGCGTTCGTGTGTGTTA 1358799 36 100.0 31 .................................... CCGATATTTCTTTCAGTTCTGTCACATTCCA 1358732 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 48 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCG # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1836695-1837389 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018676.1 Helicobacter cinaedi strain P01D0000 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1836695 36 100.0 30 .................................... ATTGCAAATAATAATCTCATCAATGCTTTG 1836761 36 100.0 30 .................................... TAGCACAACATGCAAAAGCGTAACAAATAT 1836827 36 100.0 30 .................................... GCAAGAGTTTCTTTTAAATAAAGATAGTAA 1836893 36 100.0 30 .................................... AAATTACTCGGAGTCCTCGCTTCACGCGGA 1836959 36 100.0 30 .................................... AACTGCAAACTTGGAATCTACTATGCTTTA 1837025 36 100.0 30 .................................... AAATTACTCGGAGTCCTCGCTTCACGCGGA 1837091 36 100.0 30 .................................... AAAATGTGAAGTGTGTGGGAATAATATTAA 1837157 36 100.0 30 .................................... ACTTGCGGACGAGATTTCATAGAATCTTTG 1837223 36 100.0 30 .................................... TTTTAAAATTTTAAGCCCTTGAGATACGCG 1837289 36 100.0 30 .................................... AGCTCCTCTTTTGAAGCATTCTCATTTTTA 1837355 34 86.1 0 ...................--.A.........T.T. | T [1837384] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //