Array 1 2945592-2943304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028273.1 Mixta theicola strain SRCM103227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2945591 29 100.0 32 ............................. CCACCGCCGATCTTACGAAATCCCCGTCGTTC 2945530 29 100.0 32 ............................. CGCTTTATGTACCTGAGACAGTTTCATGTTTC 2945469 29 100.0 32 ............................. GCCATGCGTAACCCGGGAATGAAATTTGGTGC 2945408 29 100.0 32 ............................. TACGGGTGGCGGCTGATCCGCGTGCGCAGACT 2945347 29 100.0 32 ............................. CGCAGGCGCTATTTGAAATAATTCATGTGTAT 2945286 29 100.0 32 ............................. CATAAAAACGACGAAACCCCAGCCGCGCCAAC 2945225 29 100.0 32 ............................. CCAGCTTAGAGCTGGCTTATGCGGGGTTGGAA 2945164 29 100.0 32 ............................. ATCACTGGCAGCCAGTCCGTTCAGCAGGAAAG 2945103 29 100.0 33 ............................. CGATCGAACATAGGTGGTAAGGATTGTGCGAAT 2945041 29 100.0 32 ............................. TGGATTACACGCTGCGCCCGTCGCGCTCATTC 2944980 29 100.0 32 ............................. AATATCTGGAGTCAGTTGGTATCACGCTGCCA 2944919 29 100.0 32 ............................. CAATGATGTCAGTCGCAGTAAAATGGAACATA 2944858 29 100.0 32 ............................. AGATCGGCAGCTCTGAGGCCTCCAGCGCGTTT 2944797 29 100.0 32 ............................. GCGATTTGATAGGTGAGTTTGCCAGCACAGGA 2944736 29 100.0 32 ............................. GTATTTGGAAACTTGGGTGTTACGACGGTGTT 2944675 29 100.0 32 ............................. CGTATGAAAACAAATACCTGCGCAATGAGGGC 2944614 29 100.0 32 ............................. CGAAGTTTGCACCAGGTGAAAACGAATATGCC 2944553 29 100.0 32 ............................. AGCAGTATCAGGAATTGCATTGCGATTCCTGC 2944492 29 100.0 32 ............................. CACGGCGCGTCAGTAGGGATTGATGATCTTTT 2944431 29 100.0 32 ............................. CTGACGCAGTATTCATCGACTTTGGTTACGGC 2944370 29 100.0 32 ............................. TTGAGAAAACTGAACACGCCCAAACTATCACA 2944309 29 100.0 32 ............................. GCTGCGCACGGATACTCGCTCACAAATATATT 2944248 29 100.0 32 ............................. AAAACGACAACATCAGGGAACGTTTGGTTTAG 2944187 29 100.0 32 ............................. TGCCAATGAATACAAAAACGCGCGAGAGCGTC 2944126 29 100.0 32 ............................. AGTCCCACGGAACGCAACAACCGCTGGGACTG 2944065 29 100.0 33 ............................. GGGGTCGCGCGTCAGCTGCGTAGCATGGCCGCG 2944003 29 96.6 32 ...........................T. GGGAGGGGCGGGGCAAATCCCTGCAGCATGGC 2943942 29 100.0 32 ............................. CGAGGTGATTGCGTTCGTTGCAGCAGATTCAG 2943881 29 100.0 32 ............................. ATATTGAGATCATCTTGAACGATGAGCTGAAC 2943820 29 100.0 32 ............................. CTTGTCGGCAACTTTAGGCAGGTTTCCCGCAT 2943759 29 100.0 32 ............................. ATGTGATCATGCGTACCAGAGAAACAGGCAAT 2943698 29 100.0 32 ............................. TAGCCATTTTCATTACGTTCTGTTGATTTATC 2943637 29 100.0 32 ............................. ATCATTCAGGGATAAACATTCATAACTGTAGC 2943576 29 100.0 32 ............................. CGTTTACGTGATTGATATGACCGCCGACATTT 2943515 29 100.0 32 ............................. CAGTGAGGCGACGGGCAAGGATGGTGGCGTGA 2943454 29 100.0 32 ............................. CAGTAAACTACGTTCTCTGTGTCGAATCTGTA 2943393 29 100.0 32 ............................. GGATAGCACCGATTTCATCTTTCTGATTATCA 2943332 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGGCGTGATGGTAAGGATGCGATCGTCGCGCAGGACAAGATCGTGGTTTTCCAGCATGCCATAGGGTTTGGGACGAGTAGGATCGAGTGTCGCTATTTTGATATTCCGCCAGATAATATCGGTAGGTAACAGTTGCACAATGATATCTTCCAGTTGTCATGTGTTGTATATACATTTATTGGTAGCGGAAGAGTTCTGTCAATAAAACCCTGCGATGATGTTATGTCTTTGTGATGGACAACATTGCCAGACATTAAGGAGCCAGGTGATTTGTGGAAAAAAGCAGCGGATTAATGTGGGTTGTATCAAAAAGATGGAGCGATTTTTTTCATAACATCATGGGGTTAAACACCAGTAGTTTGGTAAAAGCTAAAAAATAATTTGTCTTGGTTTTAAATTTTTTTAATTTCAGTGAGTTACAGCTCTTTAAAAATCGAAAAAAGTTGGTGGAATTTTTTGTGCTGTTTTTTTTGTTATAAATCAATCGTATAATTTTAGA # Right flank : CGCCCCCGCGACGAATCCAGCATCCTCTTCGATCTGTAAAACATGCTCGCTGCGGCGGGCGAAATTCCATTCACACCAGCATAGTAATCCATGTTGCAGCCAGGGCTATAGTGCGTTATGGTGTTTACATAATGTGAACGCTTGAACGGAATCACTTAATGCACGTCATTTCAAAAGAGCCATTTGAGCAAGCGGCGCGGTCATTTCCTAACGATGCTACGGCCATCAAGGCACTGTATCGTCTGGTACGCGAAACAGACTTCAAAACGCCCGAAGAACTGCGCGCCGCCGTGCCAAGCCTGGACAATTTTAAGTACCGTAAAAAATGGTGGGTTTTAGATGTAGGGGGAAGCAATTTGCGAGTGATCGCCTACATCAACTTCGTGAATAAGCGCTTCTACGTGAAGCACATCGCCACCCACGCTGAATACGATAAGCTGACTCGCTACTATCGGGAGAACAAAGAATGATCGCCGACACCACTAAAGCTATCGAAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2955362-2953929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028273.1 Mixta theicola strain SRCM103227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2955361 29 100.0 33 ............................. CGGAACAGGATGAATTTTACACGGTCGGCAATA 2955299 29 100.0 32 ............................. AAAAAGAAACCGACGGCAGTAACAATATCCCC 2955238 29 100.0 32 ............................. TTATCGGAGAAAATTTATTACGTACCTTCGGT 2955177 29 100.0 32 ............................. TCCGATAACCATGGCGCCTCGTCCGGGATATG 2955116 29 100.0 32 ............................. GTTGAGCGAGCGCCGTCGCTGACAGGCTGCCA 2955055 29 100.0 32 ............................. GATAAATGAGCCGACAACATGGATAGACTCAT 2954994 29 100.0 32 ............................. GCACCCCCCCTCATTTCGCCAGGATTCCAGCT 2954933 29 100.0 32 ............................. CAGATCGTATGGTGATCAGGTTGTTGGCTATC 2954872 29 100.0 32 ............................. AAAGCTTAGTTTTCAAACACTTCGAAAATGAT 2954811 29 100.0 32 ............................. AATTGGGGCCGAACAAGCCTTTTTACAAAATG 2954750 29 100.0 32 ............................. GATGACATTATCAAGATTCCGGTGGCCTTCGG 2954689 29 100.0 32 ............................. TAGCCGCAAGCTGCGCATTACGCTCGCTGTCA 2954628 29 100.0 32 ............................. TGTGCCTATGAGAAAGCACTGGACGAGGTGTG 2954567 29 100.0 32 ............................. CCTGTCCGATCACCTGTCCAGCGTTGGTCTGC 2954506 29 100.0 32 ............................. TTCTTCGGCATGAACTTGTTATAAACGTCAGC 2954445 29 100.0 32 ............................. GTTCGAACCCCGGCTGAGCTGGGGCGTGTGCC 2954384 29 100.0 32 ............................. ACATGACGCAGCGCGTAGTTAACGACTACATC 2954323 29 100.0 32 ............................. TGGATTAAATGCAGCGAACGGATGCCAGTAGA 2954262 29 100.0 32 ............................. AACCGGCAGAAAATCGCCGCAGTGGGCGAAGA 2954201 29 100.0 32 ............................. CCGCCCTGCTTGATGAGTTAGCCGAAATTTAC 2954140 29 100.0 32 ............................. GTCATGACATTTGGTGAAAATCGAGATTTGAA 2954079 29 100.0 32 ............................. TGTACTGCTGCGATCCTGACCAACGGGATCAC 2954018 29 100.0 32 ............................. CTCACGTCAGATTTTGGTGTGAGAGCGGAGCA 2953957 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATGCTTTTTATAAATAACGGCTTAGCTAATTCATTATTTCTATTGTGAAAATTCTGTCTTTTGAACAGAGCTTTTCAAAATAAATTAAATAACCTAAATGCATTTAATGAAGCTATATCAGGTTTATTTTTTATTGATTAACTTATTAATAATAAAGAAGATAACTATTGTTTTCTGGTTTTTTATTTATAGCGTACGTGTAGTTAATTAAATAAAAGTAAAACAAAGTTGTCATAAAGCCTTTGTTTTTTAATCTGAGAGATGGGTTTGTCAGTGTATGAAATCTGCATGGTAATATTGTCGTATCTGGCGTCATTTTGGTTTTTATTACCGCTTTACCTTTTGTTTTTAAAAGGTTTCCGGTAGAGCAGAAAAATCAAAAATCAGTTTTTAAAAAGTTATTTTGTTTCAATTATTTAGCGTTCTTTAAAAATGCGGAAAGGTTGGTAGATTTTTAGGTGCTGTTTTTTTATTTATAAATCAGTAATATAATTTTAGA # Right flank : ATATCTGTTTTCTTAGCTTTCCGAATGTTCCAGCGCGATGCCAGCCGGGCGCTTTTTAACCCGCCAGAAATAGATCATCGTCAACATTACCAGCCAGACCAGCCCGGCGATAAGCGCCAGGCGCGTTTCTGCTACTGCACCTAATACCCCAATGACCAACACCATAAAAATCAGCGTTACCACCGGCGCTATCGGCCAGCACGGAACCGGGAAGCGGATATTCGCGCGCTCCTGCGCTGTCAAACTGCGGCGCATGGCAAAATGAGACAGCAGAATCATCAGCCATACCCAAAGCGTTGCGAAGGCCGCCAGCGAAGCGATAAGTACAAATACGCGCTCTGGAATCAGGTAATTAAGCACCACGGCGCCCAGCAGCGCTATTGCCATAACAATCACCGTCATCCAGGGCACGCCGTTACTGGCAAGACGCAAAAAGCTTTTTGGCGCCATGCCTTCATTTGCCATGCCGTACATCATGCGCCCGGCACCAAAAATATCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3843181-3842557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028273.1 Mixta theicola strain SRCM103227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3843180 29 96.6 32 .....................A....... CCGGGCCGGGGCGTATCTCCGCGTTAGTGGGC 3843119 29 100.0 32 ............................. CTGGGGCAGGCGGGAACATTGTTCCAGGCGCT 3843058 29 100.0 32 ............................. AGCCTTATGTAATACTGATTGGTTTTACTTAA 3842997 29 96.6 32 .........A................... GCGCCGCGCCGGCTGGTAACGGAACGGGCCGC 3842936 29 100.0 32 ............................. GTACGCGCCTTCACGCAGGCGCGACCAGTCGT 3842875 29 100.0 33 ............................. GGGATTTGGGTTATTCGTGCATCTGGCGCATTC 3842813 29 100.0 32 ............................. CCTAATGTTGGCGGTGTATCAATCACGCAGTA 3842752 29 100.0 32 ............................. TCACCATCATCAAGACCGTCAAGCTGCAAGTC 3842691 29 100.0 33 ............................. TGGATTTCGCTCCACGATCAAAAAATCAGTAAT 3842629 29 86.2 14 ............TGG......A....... GCTTCTTGCTATCC Deletion [3842587] 3842586 29 72.4 0 ..A...T.T........AT.CA...G... | G [3842572] ========== ====== ====== ====== ============================= ================================= ================== 11 29 95.6 30 GAGTTCCCCGCGCAAGCGGGGTTAAACCG # Left flank : AATTTGCGAAGGCGCGTGCAGCGAGAGATCGGCGGTCGCCAGGCCAAGCGTATGCCCCATTTTCCCGGCCAGCTGCTGTGCGACGCGGTTAGGGACGTAGTTCAATGCCGCCATAGCCGCTTCCACCTTCAGCCGGGTTTTCTCTGCCACGTTGTCCGCCTGATTGATAACGCGAGAAACGGTCTGATAAGAGACGCCAGCGTGCTGCGCTACGTCATAGAGGGTTGTCGACTTCGTTTTCATCCCGGCTTCCTTATGGTTGCGTGTAGGGCTGCGCTGTTGAGGATGGCGAAATAGTATGTCGGAGCGCGAATAAAGTAAAAACGGGATAGCCGCGAACGGCGGAAATGGGGCGTGGTCTGTTGGTAGAACGGTAAAATTTATCGGCCGCTTTAAAAAAGTGTTTCTATTTCAATCATATAAAAATATGAAAAAACAGGAAATAGTCGGTAGATTTATTCACTGTTGCTTTTTCTTTTGAAATCAAGAATATGGTTTTA # Right flank : CTGATATTTTGTCACATTATTTCTGTGTTATGTACGTCTAACGAGCCGTGTCTGGTGCACGGCATTTAGCGCGAGATATTTATGGCTATAACACAACGAGCAACGCAAAGCGTTACTATGACCGTAGAACGGACCTTACTCAGCCGTGCGCGTAAGGCTGGAATTAATCTCAGTGCCACTCTAACCGCAGCCCTTGATGCTGAACTACGCCAGTACGAAACGAAAAAATGGCAGGGGGAAAATAGTGAAGTGCTGGAGGCTCTTAACCGCTTTCACGATGAGCACGGTTGTTTCAGCGATGAGTACAGGACATTTTAAAATGCATTTTACTGTATACAGTAACACGGGAAAAGCGTCGTCTATCCTCTGCTGCCTGATGTAATCAGCAATATTATCGGGCAGTTGAACCGCAGGATGGTTATCCCCTTATTACCCGCTGAAAAATACCCCGGTAGCAAACGCCCCGAACGGCTGGTTCCGCTTATCAGGCTGGCTGATGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCAAGCGGGGTTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //