Array 1 30981-31801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM016897.1 Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH06 plasmid unnamed1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30981 29 100.0 32 ............................. AGTAGCGCGTCAGCATCTCCAGGTCGTCCTTA 31042 29 100.0 32 ............................. TACGACGCATAAATGCGCCTGTACATAGCGGG 31103 29 100.0 32 ............................. TTACTTTTTTTAGCCGACGGCATGAGCACAAA 31164 29 100.0 32 ............................. TAGTTCAAGAATGCATTATCTTTGTATGACTC 31225 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 31286 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 31347 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 31408 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 31469 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 31530 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 31591 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 31652 29 93.1 32 ............CA............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 31713 29 89.7 32 .A..........CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 31774 28 86.2 0 ............CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.1 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1022303-1024604 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQCX02000001.1 Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH06 KPCTRSRTH06_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1022303 29 100.0 32 ............................. TGACAATGTTGCCGTTTTTGCTGGTCTGCACC 1022364 29 100.0 32 ............................. CGGCTGCTGCGTATTTGCCTGCTTCCTGGATT 1022425 29 100.0 32 ............................. AGCGCCCGGGTGGGAGTGAGTGCCAGGTTAAT 1022486 29 100.0 32 ............................. TCGAGGCGGAACCGAAAAAACAAGAGGAGTAC 1022547 29 100.0 32 ............................. ACGATTTAGCGGCAGCGCTGCGCAAAGATCCC 1022608 29 100.0 32 ............................. CCGGATAACACCATCGTACTGGGCAATACCCA 1022669 29 100.0 32 ............................. CCGCGATTACAGCATTGTCTCTATCGGCGGAC 1022730 29 100.0 32 ............................. TACCCGCACCACGTCAGCGGCGATAAGGGAGG 1022791 29 100.0 32 ............................. CAGTCGACATTGTTTCGCCCGGGGCGGGGCCG 1022852 29 100.0 32 ............................. AGGTGCTGGCTGACATTGCTGATCGTTATACC 1022913 29 100.0 32 ............................. CTAAGTGTTCAGGCACGACGTGCGCCCCACCA 1022974 29 100.0 32 ............................. GTCATGCGCTCGGGGTCGTGGAAGCCGCCCTG 1023035 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 1023096 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 1023157 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 1023236 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 1023297 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 1023358 29 100.0 32 ............................. GGTGATCGTCAGTGTTCCCCTGCCACTGGCGC 1023419 29 100.0 32 ............................. ATGGGATCCGTCGCGGTTGATCTCGGCCTGGA 1023480 29 100.0 32 ............................. GACCAGAAAGCGTGGGCGCTTTTCCGCTCGTT 1023541 29 100.0 32 ............................. CCCGCCGGGATGGATTTAACCCCGCTCTTTTC 1023602 29 96.6 32 ............................A CACTGGCAACCCACACAGAGCGGGTGCCTCCC 1023663 29 100.0 32 ............................. GCACGGCTGTAAAGGCATGTCAGCAATACGGA 1023724 29 100.0 32 ............................. TCCTGGGGAGGGTTTGAGTTTTCAATAGATAA 1023785 29 100.0 32 ............................. CCCTGCAACGTCTCAACCTGGCCAGTAAATCC 1023846 29 100.0 32 ............................. TATTCGACACCGATCCCGCCGCGGGTGGCATA 1023907 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 1023968 29 100.0 32 ............................. GCGACTGGATGTACAAAACCCGCGATGACATC 1024029 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 1024090 29 100.0 33 ............................. ATTGATGCAGCGCTGGTTTGGCGCGATGGTCGC 1024152 29 100.0 32 ............................. AGGAACCGTTCCGGCAGATAGCTCTTACGCTC 1024213 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 1024274 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 1024335 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 1024396 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1024457 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1024518 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 1024576 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================================== ================== 38 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //