Array 1 821049-818397 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKKB01000001.1 Shewanella sp. R106 ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 821048 29 100.0 32 ............................. AAATTTTAATAAACGGAAAAAACCCATTTGAA 820987 29 100.0 32 ............................. TTTGAACGTACCGGTGTTGCTCCTATTCAAAT 820926 29 100.0 32 ............................. CCTGCTTTATATCTTTATAAATACTCATGATT 820865 29 100.0 32 ............................. TGCAAAAAATAGCATCAAGAACAATAACGCTA 820804 29 100.0 32 ............................. ATATGAGCGACTTAGTCGATGCACACAAGTCA 820743 29 100.0 32 ............................. CATGTGCAGAACACGATTTGTCGACAGAAGAC 820682 29 100.0 32 ............................. CCTGAAATGTCCCCGATTAAAGGGCAGTGGCA 820621 29 100.0 32 ............................. TTCGCTATCGTTAATGATATTGCATCATTAGC 820560 29 100.0 32 ............................. GACGTAAAACTGCCGCTATTGTTTCAGAGGTA 820499 29 100.0 32 ............................. GACGTAAAACTGCCGCTATTGTTTCAGAGGTA 820438 29 100.0 32 ............................. GCGACGGAGGGCATGTTAACCTAGTTGAGTCG 820377 29 100.0 32 ............................. CGTTTTGTTCAATATCTCGGCTAGTGTTTCCT 820316 29 100.0 32 ............................. CAAAAAATTGAATCTATAAGTGGTGGCTCAAA 820255 29 100.0 32 ............................. TTGAAACGGTTGCGAGTAGAATTAACCCGTTT 820194 29 100.0 32 ............................. ATTTGACTAGCGAGGGAATGGGCGTTTTTTCC 820133 29 100.0 32 ............................. TTTGATAACGAATTTTGCCAACGCACCGGCAA 820072 29 100.0 32 ............................. CGGAGGTATTTAATGTTGGTGCTATATTCGCA 820011 29 96.6 32 ..A.......................... AAAGCACAACCTTATAGCCATTTAACGCAATT 819950 29 100.0 32 ............................. CCTTTTTAGAAGATATGGGCGTCAATGTTGTG 819889 29 100.0 32 ............................. CCGTGACCGCATTGTTTTTGTATGACCGGACA 819828 29 100.0 32 ............................. CATTAGATACCGCAACCGACGCCAGCCAAGAC 819767 29 100.0 32 ............................. CAAACACATCTTTACTAATAAGATTTACATCT 819706 29 100.0 32 ............................. ATTACTTACATGTTGATCACATTGGTTGAGAT 819645 29 100.0 32 ............................. CCAAGTGTACTCACTGATATACCTACAATTAA 819584 29 100.0 32 ............................. CCTAATTCGTGCGCCTTATCTATTAGTCGCGG 819523 29 100.0 32 ............................. CAGTCTGCTGGTAGATATGGCGGCACGTATGT 819462 29 100.0 32 ............................. TTATCAGAAGGTCAATTCACGACATACAAGTC 819401 29 100.0 32 ............................. TTTGCATTTGAGCAAAACCATCAGAATTAGTT 819340 29 100.0 32 ............................. CACATTCAGAAAGCCATTTAAAACGATACCCA 819279 29 100.0 32 ............................. GTTGTGCAAGGTGAGCAAATCTCACGTAAGGC 819218 29 100.0 32 ............................. CCAACTTATTTGAGAAAATGATGCACACAAAC 819157 29 100.0 32 ............................. CAACTACGCCAATTACAACAGTACCAACTGAG 819096 29 100.0 32 ............................. ATTGTGTGCACGAATTTGGTAATGATTTTGAT 819035 29 100.0 32 ............................. ATTGTGTGCACGAATTTGGTAATGATTTTGAT 818974 29 100.0 32 ............................. TAGCTTTCATAATTAAAACCTTATTAATTGAG 818913 29 100.0 32 ............................. CACTTGCGGGGTTTGAGTCTACCCACTTAATA 818852 29 100.0 32 ............................. AATGTTTCATGGAGGTGGCAGCATGAGTTTAG 818791 29 100.0 32 ............................. GCGCTCGACATTTCTGAGCCCGTAGTTTTAAA 818730 29 100.0 32 ............................. CCAACCATTTGCATTGGGTTCATACCTGAAAT 818669 29 100.0 32 ............................. TAGTGCGCTTAACGCCCCATTCATCATTAACA 818608 29 100.0 32 ............................. CATTACCTGCAACCAGAACGCCATCGATAAAT 818547 29 100.0 32 ............................. GACATAAAGACGTAAAAATGGCGGGTATAGAA 818486 29 100.0 32 ............................. GTTTGTTGTCTGCATCAAAGAAAAAAGGGCGT 818425 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : GCCTGTGTACTTGATTTAGGGACCAAAGAAATCGTTGGGTATGCCTTATCAAGCCAACCCAATGCAGCGTTAGCGACAGCGGCATTAAATAACGCGATACAACGTCAGAGGCCAAATACACAGGAGTTGATGTTTCACTCAGACCAGGGTTGTCAGTACTCAGCTAAGGTGTTCAGAGAAAAGCTAAAGCACTTAGGCATTGAACAAAGTATGAGTCGTAGAGGAAATTGTTGGGATAATGCGGTGATGGAACGATTTTTTAGGAGTTTAAAGACTGAAAGATTAAACCGTTTAGCTTTTACCAATCACAGCGCAGTAGTGAGCGTGGTTGAGCAATATATTCAGTTCTACAATTACAAACGCAGACATTCGGCAATAGATTATAAGACGCCACATCAGAAATATAATGAGTTAAAAAAAGCGGCTTAAAATCTCTCCAGAAATACTTGACCATTACAGGCTGAACCGGAAACGGGCGAGATAACAACCAAGCGAAGCGA # Right flank : CGCAATACAGGACGCAGTCCGCTCTAGCAGCGAAGCGATCCTAGCCGCGAAGTGTTCGCTTTTTTATCACGCAGTGAGTGCTTTATTGCTGTTACAATGATTTTTCTCAATACTCAACAGGGGACGTTGTCCGTGAATACTTTTCGTTTATTGGCCGTGTTTGGTGTTTTTTTGTTGCCAAGCGTGAATGCTGCGCCATTTCAATTTGATCAAAAAACCTATCGTCAAGATGTGCAAACCCTCGCCAGCGATAAATTTGAAGGTCGTGGGCCCTTGTCACATGGTGAGAAGTTGACGGTGGAGTATGTAGAGCATGCATACAAGGCCATGGGTCTTAAGCCGGGCTTTGGTGACAGTTACCGTCAAGCTGTGCCGATGGCAAAAATTACTGCTGACCAAACCATGCAGTTTAACATTGGCGATTTGGTTTTTAATAATGGCACTGATTTCACCGCGCGCACTGAGCAAGTTTTGCCTCAAGTTGCGTTAGATAATAGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 822796-822339 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKKB01000001.1 Shewanella sp. R106 ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 822795 29 100.0 32 ............................. CAATTTTATCGCAGCGTCGTGCTTGTAATAGT 822734 29 100.0 32 ............................. GATTGAGAAAAAGCACGGAAAGGCTTACGCAC 822673 29 100.0 32 ............................. CAAACGGCCAACACCAAAACCTAAAGCAGCTA 822612 29 100.0 32 ............................. GCATATGGTCATCGTTCTTGTGATGATGTAGG 822551 29 100.0 32 ............................. CCTGAACATTTAGAAGATGGTGATACCGATGA 822490 29 100.0 32 ............................. CATGGCAGGTATTACGTGATTTGGCATCGATT 822429 29 100.0 32 ............................. CCGCCATACCCAATCGGCACCGAGACAACCCA 822368 29 86.2 0 ....................TT....TG. | T [822341] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : TAAACCATAGCTATCTACCGCGAGATGGATTTTGCTTGTATTACCACCACGACTTAACCCAATTGCTTGATTTTCATCAGATGATGCACCTGAACTGTGTTGATGGGCTTTTACATAACTTCCATCAATAAATTCCCATTCAGTATCACTATTAGTCGATAATGTTTTGAACAGCCTAAGTAAAATACCTTTTCTTGACCACAGTAAAAATCGACGGTAAATGGTATTCCATAAGCCAAAATATTCAGGTAAATCTCGCCAAGGGCAGCCAACACGCAATCGGTAAAGGATACCTTCCATCGTAAATCGATGCTCTTGCTTGTTATAAACTCTATCATCAAGCAGAATAGCTTTTAGCTTCGACCACATCTCATCAGTGAGCATTAATCGGGGCATGGTAATCTCGTTGTATTTGTTTTTGGCGAAGTGAATTATACGAGATTACCTTCTTCGCACAAAATTCAAACAAAGATCAACAGCCCCTAATAAGATTTGAATCT # Right flank : TCTAATGAAACTGTAGAGATTTATAGCTTAAAATAAGCAAAATCTTAAAGGTATTTATTATGATTAGAAAAACTAAAATCACTGTCAGCCCTCTTCAAAAATTAGAATATGCCAAGCTGATGGTCGAACAGGGTTACACGAACAAGCAAATTGAAGATATGTCAGGTGCAGGTAAATCTGCGGTGTCTAGATGGAAAGTGCAGTACCAGGCTGAATTAGCCGGTAAAACACCGAAAAATGTCAAAGCATTAACTGAAGAACAACGAAGAATACAGCTTCTAGAAGCCCAACTAAAACAAGCCATGAGGGATAATGATATCTTAAAAAAGGCTGCAGCTTTCTTCATTCGAGACAATCAAAACTTAAAATGATGCGCGAAGTAAAGAAAGCAAACCCAGGCTTTAAAATGAGTGAATTATGCCGAGTATTCGAGATCAGTTGTAGTAGTCTCTATTACAAACCGATCCCAAAAAGCGTTGAAAAACAGGCTCAGATACAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 824199-823682 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKKB01000001.1 Shewanella sp. R106 ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 824198 29 100.0 32 ............................. GTGTGGTGTGTACTAGAAAGGTATGGAGTTGG 824137 29 100.0 32 ............................. CACCCGAAATTGTATCAAATGCCTAAGAGGTA 824076 29 100.0 32 ............................. TTCGGCAGGGGGTTAATTGTGTCAATTGTAAA 824015 29 100.0 32 ............................. AAATCGAATTCTATTGGGAAGACCGTACAGGC 823954 29 100.0 32 ............................. GTTATTCAAACTCATTTATGCCACGCCCTAAT 823893 29 100.0 32 ............................. TAAGTGTAATTGTAGAAGTAACCCCCGTAAGA 823832 29 100.0 32 ............................. CTAGGCTTGATATTATTAGTTATCGAAACAAA 823771 29 100.0 32 ............................. CCCCTAGGCGATGGTGTTGGTTATCACGTTGT 823710 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : TTTTAAGCGCCGGCGAGATCACACCGCCAAAACCTTATGAAGATGCCCAGCCACCCGCTTTGCCAGAACCTGAATCTATTGGTGATTCAGGTCATCGTACAAGTTAGGTTTGAAGATGAGTATATGTGTTGTTGTAACTGAAGCTGTACCACCGAGATTAAGAGGTCGTTTAGCTGTCTGGCTTTTAGAAATTCGTGCTGGTGTTTATGTTGGCGACGTAGGCAGAAAAATTAGAGAGATGATTTGGCACCAAGTTACCGAACTTGCAGCACAGGGGAATGTGGTCATGGCGTGGGGGACAAACACTGAATCAGGTTTTGATTTTATTACCTATGGGAAAAATGCACGTATGCCCATTGATTTAGATGGGATAAGGCTCGTCAAATTCACGCCAATTAGCAGTGAAAATGGTACAGAAAAATAAGTGTTAAGTTCTTTAAAAATTTGGTAGATTTAGTATGAGTGTTTTTATTCAATAAAAACAATTATATGCTATTAGA # Right flank : CAAACACATCTTTACTAGGGGCTGTTGATCTTTCACATTGGCAGCCAAATTATAGAGCAAGCTAGAGCCAGCAGGCTTTCAAAATTAATTTTCAATTTATCATAGCGGGTAGCTATCGCTCTAAAATGCTTGAGCCGAGCAAAAGCATTTTCAACTAAATGCCGATATTTGTATAAACACCAATCGATATCGCCATTTCCTTGCTTCGAATTTTGTCTTCTAGGGATCACTGGCTTTGAACCACATTCACGCACTTTATCTCTAATCGCTTCACTGTCGTAGCCTTTGTCTGCAATAATAAAATGACTTTGTGGCAATAGTTCAATAAGGGCATTAGCTGCTTTGCTATCATGAACTTCTCCACCTGTAACAATGAATTCTATCGGTAAACCATAGCTATCTACCGCGAGATGGATTTTGCTTGTATTACCACCACGACTTAACCCAATTGCTTGATTTTCATCAGATGATGCACCTGAACTGTGTTGATGGGCTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55487-55873 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKKB01000006.1 Shewanella sp. R106 ctg_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55487 28 89.3 32 TC.G........................ ATTCATCAATGCTTGTGCTGCAATAATGTTTT 55547 28 100.0 31 ............................ TGATAAACTTCCGAAAAGCGTTGTAGTTTAG 55606 28 100.0 32 ............................ GTGATTGTGGACACTAACACGCAACACCTCTG 55666 28 100.0 32 ............................ TTTTCTTTTCAACGCAGCAACGATAATCTATT 55726 28 100.0 32 ............................ CTGCCATCGCCACTATTTTCTGCTGATTTTAG 55786 28 96.4 32 ....................G....... ACAATCATACTGATTTTTAGAACCTGCTCGAA 55846 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : GATGCTTAAACGCAGCGGCGCACAATATTTAGTCGAAATCATTGATGGACCCTTAGTCAATCGTCACAAGCCTTCGGTGGATGTATTGTTTAGATCGACAGCAAAATGCGCAGGTAAAAATGCCGTTGGTTTTATTTTAACGGGTATGGGAGATGATGGCGCAAGGGGGCTAAAAGATATGTGTGATGCTGGTGCATCGACTGTAGCTCAAGACGAACAATCTTGTGTCGTGTTTGGTATGCCTAAAGAAGCCATCGCATTAGGGGCCGCCAACAAGATATTATCTCTGAATCAAATCCCACAAGAAATTATGCGCTATGCTTATTTAAAGATCTAGAGTTTCTAACTTCAAAATTGTCAGGTGAACCGTAGGAGCTTAAACACCAAAGTGTTTCTGGATATCAGCCTGAACTGGCGGATAACCGTTCACTTTGCTGTAATAATAAATAAACGCGAGGTATTGGCCTTGCTTCACGTTAAATGCAGGGTTAATTTTTTTC # Right flank : AAAATGGTGAAGAGTTAAACCAATAATGCACCCATTTACCACCAAGTCAAATTGTACCGATACTTGCTGATAAAGGGATATATATAGGGTCTGAATCGAGTATTTACAGAATATTAAAGAATAAAAAGCAGCTTCAGCATCGTTTAAAAAGCAAGTCTGCAAGAACGGTAATTAAGCCAAAGGCATTAACTGCAACCGGCCCCAATCAGGTGTATATACTCAAGTGAATTCAAACTGCAGTTTTTAATTTCTGAAAGTTATCATTAATTGTATCACCGAGTGTATCGGCAATATCGGGGAGGGTGATGCTAAAAAAGTCAGTGATTTTTCGTCGGAATTCTTTTGTCGTTGCGAAGTATTGCCCATTCCTCGCATGCTTATTCATTACCTTCCACAATCGTTCTATTGGGTTTAAATTTGGACTATAAGGTGGCAGGTAATGCAATGTTATATTCAGATTTTTAGCCTCTTTAACCACTAAGGCATTTCGATGGTATCCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //