Array 1 1117844-1117510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039261.1 Lactobacillus johnsonii strain DC22.2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1117843 29 96.6 32 ............................C GCTGTCGTACAGCTATCTGAAGCAATTAGACC 1117782 29 100.0 32 ............................. ATATCCACGCTAACGAATACATGCAAGATGTG 1117721 29 100.0 32 ............................. TAAAAAATCAAAGAGAAAGCAAAAATTGCACA 1117660 29 96.6 32 ............................C TACTTCTTTACTTAAGCCTTCCTTAGGATCTG 1117599 29 100.0 32 ............................. ATTAGTTCTTGGCATTGTTCTAACGTGATCTC 1117538 29 82.8 0 .....................G.A.ATT. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTGAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAGCATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTTTGATGCAAAATGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACGATTGCATCTTTTTAAAATGCTGCTATCATAGGATTCTTTTAGT # Right flank : TAAAAGAACTGATATATCAGTAATAATAGGGCATTTAGAGAGCTTAAAATTGGATATGACCCCTAAATGACCCTCAAACATTATTTTTTTAAACTTTTATCTAAAGCATCGTTGATTTTTTGGTTCATTAAATCACGATGCTTTTTGAATTCATACGCATAAGTTTGCTCAGTTGTTCGAGTGGTAGAGTGTCCTAGTCTTTTGGCAATATCATAAATTGGGATATTTGCTTGTAAGAGTAAAGCAACTTGAGAGTGACGGAGTGAGTGTGGGTGGAATCCTGGTGCAGAAATATTTAAATTCTTAAGAGCTATTTGCAATCCTGCTCCCAAGCTTTTATGACCGGGGAAGATTTTATAGCTTGGATACCAAAACACCTTAGCTTTATGGTTTCCTTTTAATTCTTTTATGCAGTCCATCATGATCTGCGGAACACTTACAATTCGCTGCGAAGTTTCATTTTTTGTTGGACCGTAATCTTTTTGACTGTAAACCCAACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1129318-1127945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039261.1 Lactobacillus johnsonii strain DC22.2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1129317 29 100.0 32 ............................. ATAACTTAGAAACATATAAACCGTATACTTTA 1129256 29 100.0 32 ............................. AAAATTAACGCTGTTAAAAAAGAAGGCAAAAG 1129195 29 96.6 32 ............................C AAGGTATGTTCACTTGCCTAGAGCTAAAGGTA 1129134 29 100.0 32 ............................. ATGGGAGAGATTATCCAGAAGTAGGAGGAAAA 1129073 29 100.0 32 ............................. AATAGCCGTACTATACACCTCGTAAGTCATAA 1129012 29 100.0 32 ............................. TAATGCCTAGGCTAACAGTTGAATTACCAAAA 1128951 29 100.0 32 ............................. ATCAATTAGAGATCAGATGAAAGGAGGTCAAA 1128890 29 100.0 32 ............................. ATTGGAGACGATTATATTTATTCCGATACCGA 1128829 29 100.0 32 ............................. TAAAGGAATATGGTGGTTTGTCTACAGAGAAA 1128768 29 100.0 32 ............................. AAGACGCGACCAAACTTTCCCCTAAATTAGGA 1128707 29 96.6 34 ............................C TACTTGTTTTGCTAGTTCAGCACTATCCATTAAA 1128644 29 100.0 32 ............................. TAATTATTGACGGTGGTAGCATTACAGTCGAA 1128583 29 100.0 32 ............................. GTATTGACCCGATATTCTTTTGTCGATTGGAG 1128522 29 100.0 32 ............................. ATCAGCTTGAATATTACTCAACTCTTGACGAG 1128461 29 96.6 32 ............................C TGGGTGTAGAGTTGGGGAAGCTGCGCACCTTA 1128400 29 100.0 32 ............................. TAAATTTTTGCAGTACCACCTTCAGATAATGT 1128339 29 100.0 32 ............................. ATGTCAACCGCAAATGAATTTCGGCAGTAGTC 1128278 29 100.0 33 ............................. TACCGCTCAATTAATCAAAAAAACTGGTGGCTA 1128216 29 96.6 32 ............................C AATAAGCTTCCTACTATAAATGCTAAGGCTGA 1128155 29 100.0 32 ............................. TAATGACCAGAAAAATATTGTTACTGGACTGC 1128094 29 100.0 33 ............................. TGAGTTCCCGTGATATCAGTGGTTGTGGTTGTA 1128032 29 96.6 31 .....................G....... ATTCCTCTAACTTGGCTGATGAAGTAGCCAA 1127972 28 75.9 0 ..G..T..........A.A.T..A.-... | ========== ====== ====== ====== ============================= ================================== ================== 23 29 98.2 32 GTATTCTCCACGTAAGTGGAGATGATCCT # Left flank : ATCAAGTTTTTTGCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGCGGCTTAATTTCTGCTCTGTCTAAACTTGAAAAGCTAGAAGAAGGGGAGGGTACTCCACAAATTGGCTCACAAGATTTAGCCCTACAACATTTGTATTTTAATTTTCCGAGTGCTCATAATTGGATTAACCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAGCGTTTAGAAAATAGTAATCAGATAAAATAAGATAAGCAAGACCAAATATCATGAAATGGTATTTGGTCTTTTTGTTGGGTTAAAATGTAGGTTAAGCACTTTATTTTTTGTTGATAGAAACTAATGGAAAATGATATTATTTGAATTAGAGAATGGCATTATATCAGGGATCTTTTAGT # Right flank : AGGATATTAGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGACGCGATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGGGAAGAGTTAAAAATTAATCACTCTATAAGTGACCTTTTTGATTTTTAATTAGAGTACTTACTATATTGTGTAAAACAAAATTATCGAAATTGTAAAGGAAGAAAATCAACTGTATTATTGGCCCATTAAACTTATTAAGAGGAAGCTACGATTAGAACTATATAACGTTGATGCTAAAGTAATTAAGCTAGGCCCTTTTGGGAAAAGTAGTGTACGATAATTCTGAATTTAAAAATTGTATAGTGCAAAAATCAAGCCTTTAATCTCTGTTCCGAAAAGAATGTCGAACCTAATTCAGCGAACTTAAAAGTTTTATCTCATTTATTAAGCGCTCTGGTAGCGCTTTTTGTTTTGTAATGGACTTATCGCTACTGATAGATAATCTAAAAAAACTTAGTTACATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTAAGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //