Array 1 950985-955889 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032416.1 Clostridium fermenticellae strain JN500901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 950985 30 100.0 36 .............................. ATACAAAGTGTGCTCTACCTTCTGCCAAATCTAATA 951051 30 100.0 34 .............................. AATGCTTCTTCATAATATATTGGACATAAATCTT 951115 30 100.0 36 .............................. TTATAAATTTTATATTCAGGTAATGATTTAACAATA 951181 30 100.0 36 .............................. TAAAATATGAAAAATAAGGCTCTTGAACAACTTGAA 951247 30 100.0 36 .............................. TTTGTTCCATTTAACAGTTCTAAGATACTTTGATCT 951313 30 100.0 36 .............................. CCTTCATGACGATATATAGCACACTTTAAATATTCA 951379 30 100.0 36 .............................. ATATATATTAATATACAGTACTATGATATATTACAT 951445 30 100.0 34 .............................. TTTCCTCTTCCATAAGATGGTTATATAAGTCCAT 951509 30 100.0 35 .............................. GTGGTATTTTTTAATTTGTTTACCTCCTTTAAAGC 951574 30 100.0 37 .............................. TGGTATTATATTTAAAATATATGCTATATGAACCTTC 951641 30 100.0 37 .............................. TTATGATATTATTATACCATGAATGAAGTAACGTGTG 951708 30 100.0 36 .............................. TGCGAATTATCAGTTTGCCATCCTTTTAATTCTTTT 951774 30 100.0 34 .............................. ATATCTATATTTATCATCTCATTTATTTATTTTT 951838 30 100.0 36 .............................. ATAAATTCTTTACATGAATTAAATTCTAATGCTTTA 951904 30 100.0 35 .............................. TGGAGAAATAATGAGGAAGTTAACGCTGAGCTTGA 951969 30 100.0 35 .............................. AGCACAAAACATGGCAAATGCAACGCCATTTGATT 952034 30 100.0 36 .............................. AGGTTTAGGTATATATGAAGTTGTTGATAGGGGTGG 952100 30 100.0 36 .............................. TTATATTATATAATGTAACATATATATATAAATATA 952166 30 100.0 36 .............................. TATAATCGTAAATGTTGATCTATTAATATTTTTATA 952232 30 100.0 37 .............................. CAAATTTATAATCGGCTAAATTATAACCTTGCTATGC 952299 30 100.0 37 .............................. AAGACCGTTTTATGTTTATCCCATGGTTGACTAGATA 952366 30 100.0 36 .............................. ATGTTATAAGCGTTGCTATGGACTATTATAAATCCA 952432 30 100.0 37 .............................. CCTTTAGATGATAAAGCAATATCAGGCAAACTTAAAG 952499 30 100.0 37 .............................. CTATTTTTACTGTTCCATTGCCATTCCAAAGAGGAAA 952566 30 100.0 36 .............................. AATACAGCATACTCAAAATGATATTGCAAAGTTTAG 952632 30 100.0 36 .............................. CATAATGCTATCTAAAATTTAAATTCTATCTTATTT 952698 30 100.0 36 .............................. CCATAAGAAAATGTTTTTCTTGAAGGACTGTGTATA 952764 30 100.0 35 .............................. TTACTCGTCTGCCTGTTACAAGTTCCATTTCATCT 952829 30 100.0 36 .............................. AGTCAATTCCTAGCTAAATTTGTAACGACTTTGTTG 952895 30 100.0 36 .............................. GAAGCTATTGCATCTGCTCTTGAACTTGCCATAGTA 952961 30 100.0 37 .............................. GTAGCTAAAATTGATTTTCCCATGCTAGGCCTTCCAG 953028 30 100.0 38 .............................. GAAGGCTATGATGCTTGCCTTGGTTTTATTCCAGGAGT 953096 30 100.0 35 .............................. GTAATTGATAATCAGTAAAGGTGGCTTTTAAGCCA 953161 30 100.0 36 .............................. CCTCTTTATTCCCATTTTAAGGTAAAAATAAAAAGC 953227 30 100.0 36 .............................. CAGTAAATCCCTCCTATCTTTATGTGTGAAAGTTTC 953293 30 100.0 36 .............................. TGTCCACATGAAAAAGTTCCCTCGTACCAAGCCATT 953359 30 100.0 36 .............................. GAATTGCTTAGTGCGTAATGCAAATCTTTTACGAAC 953425 30 100.0 36 .............................. AATCTCCTTTTTTTGTTTTTATAGTTGGTGTATCTG 953491 30 100.0 34 .............................. ATGATTACAAATTGCCTAAAGTGCAGTTATACAT 953555 30 100.0 35 .............................. TATATAACTTACATGCTTAAACCATTGTTTAGTTA 953620 30 100.0 38 .............................. GAATGTATAAAAGATGTTTTATACAAAATTATTATTAA 953688 30 100.0 35 .............................. TGGATCTTTTTTTATTTAGTAATGTTTCTTGACTT 953753 30 100.0 35 .............................. TAAACCATACTGTTTCTATGTTCTGGAGATATTAC 953818 30 100.0 37 .............................. GCAAGGTATAATCGACACAGATTTATTAGAAATAGTT 953885 30 100.0 38 .............................. AAAATAAATACATAAATTTATAGTTCTGCAATAATGCA 953953 30 100.0 36 .............................. CCATGAAGCTTTAAATTCGCCCCTTCCTTTGTTATA 954019 30 100.0 37 .............................. CTGTTGAACCATTGAATAAATTCTTTTGAACGATCTG 954086 30 100.0 36 .............................. GAAATATGCAATTAACCACATAATGAATAACCCTGC 954152 30 100.0 35 .............................. CCAATTGATATTATTTTTTCTTTTCCACAAAACGG 954217 30 100.0 36 .............................. GTATTTAACTGAATTTATAGAAAGATATAATTATAA 954283 30 96.7 36 .......A...................... GCCTTCTGGAGATTTCAATAAAAAATTGAAAAAATA 954349 30 100.0 34 .............................. TAATGACAATTTTTTGTATTTAATTTTAAATCTT 954413 30 100.0 35 .............................. TAGATATATCGTTACAGTGTTTTAATAAATCTCTT 954478 30 100.0 37 .............................. AACATCAATATGGACGCACTAGATAGCATGGAATATT 954545 30 100.0 36 .............................. CTATCTATAGATGCAGCAGAGAAACAATTTCTTACA 954611 30 100.0 36 .............................. TTTTACTTCTAAGTTTTTCGTCTTTGTATTGTCCGT 954677 30 100.0 36 .............................. ATGTCATTTACTATTTTAAAATATCTCCTAGGCGGA 954743 30 100.0 36 .............................. CATAGTGTTTATAAATAAAAGGAGGTTTGTTATGGC 954809 30 100.0 34 .............................. GGATATATTGTAAATATAAATTAGAAGAAAGAGG 954873 30 100.0 36 .............................. ACAACGGAGAATATTGTAAATAAGTATATAAGAAAG 954939 30 100.0 35 .............................. GCTATACTATCACAATTCAATAATTTAGTATCTCC 955004 30 100.0 36 .............................. TATACTCCACCTGCTCCCCAATACAGGTTTTCTATC 955070 30 100.0 37 .............................. AGGTAAAACAGATGATCCAGTATGGCTCGGCATATGG 955137 30 100.0 36 .............................. AAAGCTTCAAGGAATCCATTTGTAAATGCATTGCCC 955203 30 100.0 37 .............................. CCAATGCCAACTGCAGTACAGTCCTACACAATGGATC 955270 30 100.0 35 .............................. GATTACAAACATAAAACCAGTAATTTAAGAAATAC 955335 30 100.0 37 .............................. AAAGATAGTTAAATAAAAAAAGAAAGGAGTTTTAACA 955402 30 100.0 35 .............................. GGATCTTTTTTATCTTTTGGATATAGCTTATTATA 955467 30 100.0 36 .............................. CTTGTATATAAATAAAAAGCGTTCATATCATATTCT 955533 30 100.0 34 .............................. TAATTCTCTATTATATCGCAAGAAGTAGTAAACC 955597 30 100.0 34 .............................. TGTGTAACACCTATATCTACGCCGTTATTATCAT 955661 30 100.0 36 .............................. ATACTTATCTTAGGTATTTTAATTTCCTTTCCACCA 955727 30 100.0 36 .............................. GAAGGCCGTTGTTCGTAATAGTAAAACTGTAAAAAA 955793 30 100.0 36 .............................. AATTCAATATACAGATGGAAAAGAGCAGTACTGGTA 955859 30 90.0 0 .....................G..C...G. | T [955878] ========== ====== ====== ====== ============================== ====================================== ================== 75 30 99.8 36 GTTGAACCTTAACATAAGATGTATTTAAAT # Left flank : GATGATGATGTTCAGGATGTTTACCACAATGCTGAATTTCCTGATGAATTTGAAGAATAATTCATATCAATATTTTATTATATTTAGATAGTTAAAAAGTGTGATGATATACGTTTCTTACTGTTTTATGATGAAATTATAATACCTCTAAATGTATGTATAAAATTATTTACATTTAGAGGTGTCTTTATGTTATTACAAGAAATATATCTTCAAATTTATAGAAATATGTGATGAATCAAAGTATTTATATAGGCCGTCGAAAATCAGTAAAGTTAAGGATAGAATGTTACAATAGTATTCTTACTAATATATACTTAATATTTTCCAACCACATTTAGATGCTGAAGTGCTTTAGGTCATTTAAATTCAATAAGTTAGAGCACTTTCTTATTTATTACATACAAAAAACAAAAACGGTTGGAAAAATTTTAGATAAAGTCTTTATTATCAATACTTTTAGGGTTATAATAAAAATAATGAATGGCTATTTTGCACAG # Right flank : TCAATAAAGTAGACACAAAATATCGAATATTTAAGCAGATTTTTTGCAATTATCCTCACATTGTTGAGGGGTAATATATCCTATAGAGCCATGGATTCTAATCCTGTTATACCATGATTCTATGTATTGAAATACAGCTAATTTTGCAGAATTATAATCGCAGTATTTAACAAGATTTACCTCTTCTTTCTTTAATGAAGCATGGAATGACTCAATGCAGGCATTGTCATAAGGGCAACCCTTGGCACTGAAAGAGTGAGTTATTAAATGAGTATCTAGAAGATAATTTTCAAATTCACAGCTTGTATATTGAGTTCCAAGATCACTGTGGAGAACCAGTGGTTCAACCGGTTTCTGTAGATTAAGAGCATTGTCAACTGCATTTACAGCAAGTTTAGAATCCATAGATTTTGAGAAACTATAACCGATTATTTTTCTGCTGTAGAGATCCATGACGGATGCAAGATAACACCAGCCGTCTTTTATAGTGTGTATATATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1361009-1363123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032416.1 Clostridium fermenticellae strain JN500901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1361009 29 100.0 37 ............................. TTAAATAAACCATCAGCATTTATAACACATGGCATAT 1361075 29 100.0 36 ............................. TTAATGTAGACCAATTTGGTAAGGATTTGACTCAAA 1361140 29 100.0 37 ............................. CGTAATTCTATAGAAGTTGATTATATAGATTTACCCT 1361206 29 100.0 36 ............................. AAAGGTGTGCAAGATGCACAAGGAAACTGGAGTACA 1361271 29 100.0 36 ............................. TCCGGAAGGAGATTCAATTTTAATAATTTGGATAAG 1361336 29 100.0 36 ............................. CTTCTAAGATAGGGAAGTGTCCTATCTGTGGAGAAG 1361401 29 100.0 36 ............................. CCAAGAGTTTCAGTAAGAGTAATAAGTCCTTGCCTT 1361466 29 100.0 36 ............................. GTGTGGTGGCTGATGATTTAACACCTGCACAGATAA 1361531 29 100.0 38 ............................. ATTGAAAACTCTACTTCAAGCATTAGGATCCAAAACGG 1361598 29 100.0 36 ............................. GCACAAATGTTTTGATACAAAAAGCTTCAGAGGGAT 1361663 29 100.0 36 ............................. GATCTTAAAGGCTCTCTGGAATTCAGACACGCCACA 1361728 29 100.0 35 ............................. AAGGAAAGTTTTAATGCTATAATAGAAACTGCACT 1361792 29 100.0 37 ............................. CCATGTACGTATTTAACAAGTGCCGGAACGAGACACT 1361858 29 100.0 36 ............................. GCTATAAGGAACGATATATCGGCTGAAAACATTCAA 1361923 29 100.0 35 ............................. TTTACATTCCTTATCTATTACTTTTAAACTTCCCA 1361987 29 100.0 37 ............................. ACAGATACACCTATTTGGTTAGCAAGCTATGGGAGAC 1362053 29 100.0 36 ............................. GTAGTGTACATTCTGTTTCATTAACAACAACTTCAT 1362118 29 100.0 36 ............................. GAAGAATTGTAGTTGGTATAACAGCTGAAGTATCTC 1362183 29 100.0 37 ............................. CCTTTTAAGCAACTAAATCATATAAATTATGTTGCTT 1362249 29 100.0 36 ............................. GTGTAAAAAGCTGATAGGCGAAAGACAGCTTGTCTG 1362314 29 100.0 35 ............................. TTTTACGGATATCTCTCTATTTTTACAGATATCTG 1362378 29 100.0 36 ............................. TATGATGCTTTTCATCTAATAACATTATTAGAAGTG 1362443 29 100.0 36 ............................. CTTTCGCCCGCCAATAGTAAATGATGAAAACTAATA 1362508 29 100.0 37 ............................. TTTTCTTTTTTGCTAAAAAGCAAATAAAAATATTAAT 1362574 29 100.0 36 ............................. ACTCTATTTACATGTTCTCTAATTTGGTTAATCATG 1362639 29 100.0 36 ............................. TTAAAGGAACTTTGGTTCAAAGGACTGACACGCTAC 1362704 29 100.0 36 ............................. TGCATCTGCAGCGTCTTTATAAGGGTCATCTATAAT 1362769 29 100.0 36 ............................. TTGATGGCCTTGCTGATTATTCTAGGGAAGATGGTT 1362834 29 100.0 37 ............................. TCAGCAACATCTATAGGAAGAATTAAATCAGCATCAT 1362900 29 100.0 36 ............................. TTATATTATTAATTCGCTTAAGTAGCCCATATTTTA 1362965 29 100.0 36 ............................. CAGTGCTATACAGTTGCAACAAAAGAAGAACAGGCA 1363030 29 100.0 36 ............................. GTGGTAATATAATATTATAAAAAGTATTTAAAGGAC 1363095 29 79.3 0 A................C..G...C..TG | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.4 36 GTTTTATAAGAACTATGTGGTATGTAAAT # Left flank : AAATATTTTATTGGTGATGAAGTTTACAAACCGTTGAAAGCATGGTGGTAGTATGTTTGTTATATTAACTTATGATGTTGGTGAAAAAAGAGTAAACAGGGTAAGAAAAATTGTAAAAAAGTATTTAACATGGACACAAAATTCGGTTTTTGAAGGAGATATAACAGAATCCAAGCTTCATAAATGCTTATCTGAAATAAATAGAAACACAGTAAGGTCAGAAGATTCAGTTTATATTTATAGAGTGCAAAATTCTAACAATATAAAGAAAGATATAATAGGAGTAGAAAAAAATTATGATGAATTGTTTCTTTAAATTTTGCATTAAACCCCATTTTTTATAAAGTACAGTAAAAGCATTGATATTGAAGGAATGAACTGCCTTTGCTATAATGTTAACATGCACTACTGGAGGTTTACTGCAAATGTATTGAATTTGAGAGTTTCATAAAGTCCTGTAAGCAAGAAAAATAAGGCTTTAGGGTTTTTTGAATTTTGGG # Right flank : GGTTATTATTGTGATATAACTGAAGAATATTTTAATCTCTTGTGTGGAATTCTCCCATACTTTATAGGTGGGAGATGTACAGCACTTGCCGATAAGCAACAAATGTTATAATCTATAATCGATTACATATACTGAATTTATTAATGTTTAAAGAGTGCGAGTAGTAGATTAATAAAAAAGAGTTCCCGAAGATAAGAAACCAGTTATAGAAAAGGTAAATAATATATTACCTAAAGTAATAGTCATGTATTCAATAAAACAAGAAATGAATCATTCATAGAATAGAATATTACCGTTGATAAATAAGAGATAAACTTCAAGTAGATGGTATTGACAATCGAAGAGGTATTAAATTCTATAGTATTAACATATGAAAATTATCTTAAAGATATTGCATTTACTAAATACTTATATATATAAACGTTTATAAAATCATATATTAATGAAGAATATGTAAATGCAAAACCGTAAATATCTTATAAATAGTTGAAATTTTTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1407157-1401021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032416.1 Clostridium fermenticellae strain JN500901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1407156 30 100.0 35 .............................. ATAAATGACTATCCAAACATCAAGGAAAATTCATA 1407091 30 100.0 34 .............................. GTATTGGAGATTATGTTATAAAGGGTATAAACGG 1407027 30 100.0 36 .............................. TCCCATGCCTTTCTTGTACATATAGTCATATATTTG 1406961 30 100.0 35 .............................. TTAAAGATTTAACCAAATCTCCCATCAAGTCGACT 1406896 30 100.0 37 .............................. TTTTAAACTTAGAATATAATAATTAGTCATTCTTTCA 1406829 30 100.0 35 .............................. GTTGAAGAAACTGAACAGAATCAACAAGCAAATAC 1406764 30 100.0 36 .............................. TTCAAAGGCAAAAGTTTACTTACAATTTTGATATGT 1406698 30 100.0 35 .............................. TCTTCATATCTTCCATAATGTTTTATGGAATTTTC 1406633 30 100.0 37 .............................. TAAGTGGTGTATCTAAAACTTTTCTATATAACAATGC 1406566 30 100.0 36 .............................. TAAGTATAGAAATAATGTTGGACTTAGTAAATATAT 1406500 30 100.0 36 .............................. AACTAACGTTAATGGATATATTAGTATTCTTGTTAG 1406434 30 100.0 36 .............................. AATGGACAATTTAGAGAGTGTCACAGAGGTATCCGA 1406368 30 100.0 35 .............................. AAACTCAGGTACATAAAACTTACCATCCTCAAATT 1406303 30 100.0 35 .............................. AACATACTGAAAATAACCAGCCAGATCCAAGACGG 1406238 30 100.0 36 .............................. TTCGCTAAAATTTAACGAAATTAATTACTCTTTTTA 1406172 30 100.0 37 .............................. CGAAGTTATAAAAAGAAATATAAAATAAATAAGAGGA 1406105 30 100.0 36 .............................. TACATATCAAAAATACAGACAGTTGCAATACATGCA 1406039 30 100.0 35 .............................. TGGTCTGCAGGCTGTAGGAGTTCTTGTGGCAAATT 1405974 30 100.0 36 .............................. AGATAGAATGTCAGAAAGTACAAATTCAACAACAAC 1405908 30 100.0 36 .............................. TATCTTTCTTTTCATATTCTTCAAATGGTCTATTCA 1405842 30 100.0 35 .............................. TTATACTTGTAGTATCCAGACATGTAATTAAGGAG 1405777 30 100.0 37 .............................. AAAATAGTAATAAAGATAATTTTGTATTGTGGATTAC 1405710 30 100.0 36 .............................. AAGATATTTAAAAGAAAAGTACAATGATTCAAATCC 1405644 30 100.0 35 .............................. GTTCTGCCTCATAATCGATAAATATTATTTTCGCT 1405579 30 100.0 35 .............................. GCAGAATATCCAATCTTAATTCTATCTCTACACTT 1405514 30 100.0 35 .............................. ATCCATTGGTATCGCTCACTTTCTATGTATACTAC 1405449 30 100.0 35 .............................. GCTAAAAGGGAGGCTGAATATAGGGCTAAAGAACC 1405384 30 100.0 34 .............................. GTGCTTAAGTTGTTCTTAAGCACTTCTTCATTCC 1405320 30 100.0 35 .............................. CTATATATTGTATTTGGTTCAAATTCATCCACATC 1405255 30 100.0 36 .............................. ATATGAAGAAAGTATTTTAGATAATAGTATTAAGGA 1405189 30 100.0 35 .............................. AAAAATGCAAACATTAACTTAACAGATAAAGAGTT 1405124 30 100.0 36 .............................. ACTTCAATTACAAAGATGATGGCGTTTCTAAGTATG 1405058 30 100.0 36 .............................. ATATAACCAAGCCCGGGAGTATTTAGGACTAACGAT 1404992 30 100.0 36 .............................. GTATAGGACAGACAAAGTAACAGTAGGCTTGACAGG 1404926 30 100.0 35 .............................. AACTTCTTCTTGCAATTACCATAGCTGCTCCATTA 1404861 30 100.0 36 .............................. GCTATTATATCTTCAATATTATCAGCTTTTGCATCT 1404795 30 100.0 36 .............................. GATAAAGAATTTAACAAACAAGGTTAAAGCCTTTAA 1404729 30 100.0 36 .............................. AAATTCTTTCTGTTAATGTTTTTGAATCTTTTTTAG 1404663 30 100.0 38 .............................. GTTATTGGACTTATTTGTAATCTTTTGTGTATTATTTC 1404595 30 100.0 36 .............................. TGTACTCCAAAGTTCATTTTATCTTTACTTATGTAT 1404529 30 100.0 35 .............................. GCCCAATTAAGCGGCATATCTGTTAAAACCTTGCA 1404464 30 100.0 34 .............................. CTGCCGGAGTACCTTTTGTTTTATGCAAATTATT 1404400 30 100.0 36 .............................. CCGCTAAAATTCCTTTAAATATTGCTTCTACTACCT 1404334 30 100.0 34 .............................. CAGATGCACTATATAAGAGATCTAAAATGAAATG 1404270 30 100.0 36 .............................. TTTATCTAAGTTATCATCACCATAGTAAGGAAAGTC 1404204 30 100.0 36 .............................. AACCCCTAAACAAAATAAACATAAACAATTTGCTCC 1404138 30 100.0 35 .............................. TTACCAAATACTAATACATGGGTAGATATAGACAT 1404073 30 100.0 36 .............................. TTATTACACTTCTAGTTATTCAGATTGTCAAAAAAC 1404007 30 100.0 36 .............................. TAAAATTAAAAATAATTATCAAATAAATCATAAAGA 1403941 30 100.0 36 .............................. GCTACAGAATGGAACAGTTATAAATGGTGTTATGAT 1403875 30 100.0 37 .............................. GAAAAAATCTTGTACACATTACATATAACATTAATGA 1403808 30 100.0 35 .............................. TTAGCAGCTAAATGTACAGCTAAAAGATTTGTTCC 1403743 30 100.0 36 .............................. AGGAAAAATTAAGGGATATGCTTTAATAGATAACAA 1403677 30 100.0 36 .............................. GAAACGAGAATTAGTCAGAAAGAAAATAATTAATGA 1403611 30 100.0 35 .............................. CTCCATATTGCGAACTTGCAACTGCTGTAATAATT 1403546 30 100.0 36 .............................. TTTAACTAATGTATGTTGGGGCGACGTTAAACAATG 1403480 30 100.0 35 .............................. AAATAAGTGATTACATATATAATTAATTTTATTGC 1403415 30 100.0 35 .............................. GCTTTAGGAATTATTAGTTTAATTATAAGTAATGT 1403350 30 100.0 36 .............................. TTATGATGCCAAAGACGGAACTAAGAGATATGTTAC 1403284 30 100.0 35 .............................. GTCGTACCCTCTCCGACTTTTGAATCGGAGACTTC 1403219 30 100.0 36 .............................. ATGTATTTATATTTAATAAAAAAAGAGAGAGATACA 1403153 30 100.0 35 .............................. GAATGAAGTTAGCAGGAAACGATTAAGTATATTTA 1403088 30 100.0 37 .............................. CCAAGTTTTATACTATTAATTTTAAAAGGTGCTAATA 1403021 30 100.0 36 .............................. TCAAAAGTGTGGATATAATGGAGAAATAAAAATTAT 1402955 30 100.0 36 .............................. ACCTTTAAACACTGCAATTAACATATGTTGCGGAAT 1402889 30 100.0 36 .............................. TTCCTTTAGACCTGTCTTAAATTCCTTACTGTCTAC 1402823 30 100.0 37 .............................. TAAATTTTAATTTTATGAACATTTCCTTTCCTATGGT 1402756 30 100.0 36 .............................. GTTTATCACTAGTAGTTATAATATTAAGCAATCTAT 1402690 30 100.0 36 .............................. ATAAAACGAGAAAATAAGTTACGAAAAATGAATTTA 1402624 30 100.0 36 .............................. GAAAAATTTCTTTTAGCAGTTCCAATTGCTCTTCCA 1402558 30 100.0 36 .............................. ATGCATAAAGGATAAAGACAACATTTATTTATATGA 1402492 30 100.0 35 .............................. TAATTTCTATTTTAAAATAAGTGTGGTTAAAATAC 1402427 30 100.0 35 .............................. AGCTATGCTCTGCTAATCCACCTTTATAATTACCA 1402362 30 100.0 37 .............................. TTATTTTTTTATAGAATAATAATAATTGTACATTTAG 1402295 30 100.0 36 .............................. TGATAAATATGCCAAGGAATATGAATATAAATCATG 1402229 30 100.0 36 .............................. GCTGTCTGAATAACTTCCTTTTGCCCTTCTCTAGCT 1402163 30 100.0 35 .............................. CAATTTGTTGATACCCCCGGTACCTGTCCTGTTTC 1402098 30 100.0 36 .............................. TTCTCTGAGAGCCAGTAAGTATTTAGTTTAATCTCG 1402032 30 100.0 36 .............................. TAGGGAATGGATATGTCCTGAATGTGGAAGTATAAA 1401966 30 100.0 36 .............................. TAAAAAAATAGTTGATAAAGGTGGATTCGCATATTT 1401900 30 100.0 36 .............................. AATAACTCCCAAAATTTATCTATATCACGTTTAGAA 1401834 30 100.0 37 .............................. TACTTATTTTCATTACGTAAATCTAATTCAAGTATAT 1401767 30 100.0 34 .............................. AAATCACAACCTTCAGAATAGATGGGAAATATTC 1401703 30 100.0 36 .............................. ATAAAAATAAATAAATGAGATGATAAATATAGATAT 1401637 30 100.0 36 .............................. AAGTAATAATTATGAAATTATATTATATCAAAATAA 1401571 30 100.0 35 .............................. AAGAATATAGATTTAGAATTACAAGAGTTGGATAA 1401506 30 100.0 34 .............................. CTTTTTGAAATACATATGGACAGAACTTTATATA 1401442 30 100.0 36 .............................. TGATATTGTTCAATTTAATGCAAGGGTAACAACCTA 1401376 30 100.0 35 .............................. TACAATGGATTAGAATTAAAAATGAATAAAGTTAC 1401311 30 100.0 34 .............................. CTGAAGGATATTTGGTTTGTCATATTTATATATG 1401247 30 100.0 35 .............................. CTACAACAGAACCAATTAAGAGATAGACATGTTCC 1401182 30 100.0 36 .............................. ACTTGATGATATAATACCAGAATATGCAAATTGTTT 1401116 30 100.0 36 .............................. GAGGAATAAGGATTTCAGATGTAATTAGTTGTATAA 1401050 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 94 30 100.0 36 ATTTAAATACATCTTATGTTAAGGTTCAAC # Left flank : CTCTACAGCAGAAAAATAATCGGTTATAGTTTCTCAAAATCTATGGATTCTAAACTTGCTGTAAATGCAGTTGACAATGCTCTTAATCTACAGAAACCGGTTGAACCACTGGTTCTCCACAGTGATCTTGGAACTCAATATACAAGCTGTGAATTTGAAAATTATCTTCTAGATACTCATTTAATAACTCACTCTTTCAGTGCCAAGGGTTGCCCTTATGACAATGCCTGCATTGAGTCATTCCATGCTTCATTAAAGAAAGAAGAGGTAAATCTTGTTAAATACTGCGATTATAATTCTGCAAAATTAGCTGTATTTCAATACATAGAATCATGGTATAACAGGATTAGAATCCATGGCTCTATAGGATATATTACCCCTCAACAATGTGAGGATAATTGCAAAAAATCTGCTTAAATATTCGATATTTTGTGTCTACTTTATTGACTTAGATCCAGTTCAACAAATATACATGGTAAGAAAATATTAATGTGTCAATA # Right flank : CTGTGCAAAATAGCCATTCATTATTTTTATTATAACTCTAAAGGTATTGATAATAAAGACTTTATCTGAAACTTTTCCAACCATTTTTTATTTTAGACTGCCATGATAAGAAAAGTGACGTTAGACATTGAATTCAAACAGCTTATGATCCCTTAACATTTAAAGTCGGTTGGAAAATTAAATGTTAAGGAATACCCAAATATGTATATAGTTAACTAATTATAATATATTATGTTATACTAATTAAAAATAGTAATTAAATCTTAACTCATTCCAAATATTTATCTCGATTAGAGGAGGTATATTATGAAATTTAATGCATTATACAACCCTTTTAAGTCTATTAGAACTCCTTCCTATGGAAAAAGAGGAATGGTGGCCACATCACAGCCATTTGCAGCTGAAGCTGGCTTTGAAATTCTAAAAAAAGGAGGTAATGCAGTGGATGCAGCCATAGCTACTGCTGCTTGTCTAACCGTATGTGAACCGACATCAAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1413703-1416426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032416.1 Clostridium fermenticellae strain JN500901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1413703 29 100.0 37 ............................. ATTTTATACCTCCTAAAGTACTCTCATTGCAGCATTG 1413769 29 100.0 37 ............................. ATTTTTTAAATTTTCTATGTCAATTTCAATGTTTTTT 1413835 29 100.0 36 ............................. ATGGAATCGTATTTTAGGTAGCTTTTTTTCTTTTAT 1413900 29 100.0 37 ............................. ATCTAGAACCTCATCTATCATATCCCTTAATTTTAGT 1413966 29 100.0 37 ............................. ATCTAATTTATATTTGTTTTGTTCTTCTAATTGTAGA 1414032 29 100.0 37 ............................. AGATACAAAAAAATGTTTTGCTATTGCAGGACTAGCA 1414098 29 100.0 36 ............................. AGCTTTAATCTGTTAAGGAGTTTCGTTGCGTCTGAG 1414163 29 100.0 37 ............................. ATTAATAAATTGTCCATCTACTAATACATCTATATAA 1414229 29 100.0 37 ............................. ACACCCTGTGTATAAATTAACCGCAAGAGGAGAATAT 1414295 29 100.0 37 ............................. ATTCATAAATTTTTAATTGATTCCAGGTATTCGCTTT 1414361 29 100.0 35 ............................. ATTCCTAAGTTACTAAAAGTTTTAAGCGCAAGCTT 1414425 29 100.0 37 ............................. AGTTTAAAAATTCTTCTGCTGTAGGATTGTCTGGGGG 1414491 29 100.0 37 ............................. ATGAGTGGATAAATTTTTATGAGGATGACAACGGGCG 1414557 29 100.0 37 ............................. ATTTAGTGTTTGGAGTAAGATGATAGAAATGTGTGTA 1414623 29 100.0 36 ............................. AAATTATACATCATCTTTTTATAATGATGAAGATAC 1414688 29 100.0 39 ............................. AGAATTAAGAAATACTTCTATATGTATATGTGGACCTAA 1414756 29 100.0 37 ............................. AGAAGACGTTGACCAATATTATACCCTAGCCAATGAA 1414822 29 100.0 37 ............................. AACATAAAGATAATTTTGGAGGTGAAGTTGTTGGATT 1414888 29 100.0 38 ............................. AGATGGTGAATATGTCGACTGTACTGAAGGTGTTGTAC 1414955 29 100.0 34 ............................. AGGACTGATACGCTACTTGCAATTAAAGAAATCT 1415018 29 100.0 37 ............................. TATATAAGCTTTTATTCTGGTAAACAACGGATTACCA 1415084 29 100.0 37 ............................. TTGGCGTCCCAAACTGTCTTAAGTGTATCCTTCAATA 1415150 29 100.0 37 ............................. TCCAATCCATTTTTTTAATTGAGTTGGGCTATTAGGA 1415216 29 100.0 37 ............................. TATAATAGCAATGGCGAAGACGTACAAAATAAGACCA 1415282 29 100.0 37 ............................. TGAAGTACATAAGGCTGAACTTGATAATTTAACACAT 1415348 29 100.0 35 ............................. TCAAGAATGTTGTTTAGACAGGGAGAGCAAGGAAG 1415412 29 100.0 37 ............................. TATGATTACTAAATCTGCATTGTCTAGGCAGTTGAGT 1415478 29 100.0 37 ............................. TCTATTTTTTTAATGGCTCATTTATATGTGTTAATTT 1415544 29 100.0 37 ............................. TAGTATTTCCGTGATAGAAAATAGATTAGATACAGAC 1415610 29 100.0 38 ............................. TAATGCCTTTTTAGTACGATTACTTATTGCCTGCCCGG 1415677 29 100.0 38 ............................. TTTATTAATACAACCTTCTATTTCTGAACCACTTCCAG 1415744 29 100.0 37 ............................. TTTGCATTTCTTAAGCGTTTAGGTTGCTTTGTCTGTT 1415810 29 100.0 36 ............................. TAATTCAATACCAACGGCTGTTAAGTCTGTAGTTAC 1415875 29 100.0 36 ............................. TAATAATAGGAGACTTATTATTAATTGTATTTTTAA 1415940 29 100.0 36 ............................. TCCTTCATTTTGTGAAGAAAGAGACTTAACAGAAAT 1416005 29 100.0 36 ............................. TAATATAAGGGGAGGAATTATTTATGACTAAAAATT 1416070 29 100.0 36 ............................. TACTATTTTGCCAGTATCAAAAGCCTGTAAAAAACC 1416135 29 100.0 38 ............................. TCATGAATAATGGTAAGATAAATATATAAATAAGTAAG 1416202 29 100.0 37 ............................. TAAATGTACTGATGAATAAAGTCCGCACAGAAATAAG 1416268 29 100.0 36 ............................. TCCGCAACAACTCTATAAAAGAGTTCTTACATTGTC 1416333 29 96.6 37 .......T..................... TGGAATTGGTTTATGAGTTATTGGCATAACTGCAGCT 1416399 28 82.8 0 ..............A.T.T....-.A... | ========== ====== ====== ====== ============================= ======================================= ================== 42 29 99.5 37 GTTGAACCATAACATGAGATGTATTTAAA # Left flank : AGAAATGGGGCTTTCTTTATTTACAAAATTGTAATTTGTGAATAAAGAATAGAATTATATAAATTTGAGTAATTTTACCTAAGAAATCTATAACATTATAAATTAAAAATAAATATCTAAAAAGATTAATAATATAGGAGTATTGTATGCTAGGCTAGTAAAAACATGTTTAAATAATATACTTAGAATTTTTAGAGCAGGATAAGATTTAAATAGTATAGGTTAGATACTATATTGACGGATCAGGATTGTGTTTTTGCTGAGATATAGATTTTATTATTTTATTAAGATATTTTAAATTATATGAATTAAAGAGTTTAAAATTTTCCAACCATTATTGTGATCAAAAACGCCTTGATCTATGTAGATTCAGTGATTTAAATCACTTTTATTATGAATAAGTTTGAAAATCAAAATTGGTTGGAAAAATTTCAGATAAAGTCTTTATTATCAATAGATTTAGAGATATAATAAAAATAAAGAACGGCTATTTTACTCAG # Right flank : ATAAATGTATTTTTACATTATGATTATTATCAACATAATTTGTATTAAGTTTAATTTAGTATTTTTAAGTCACATTTTTATACAGGTTTAAATTATAAATATTAAAATAACAATGGATAATTTTATATAATAATTTTATTTACACACAAATTTAAATTTTTAGTTATAAAAAACTTCTGTTATTATGCAGGAGTTTTTTTAAATAGGCAGAATAATAATATATATGGAAAATCATTTCTTTATATATATAATAATACAAATGAATGGAGAATATTGATGGATATTGTTGAAATAAATGTAAAAGTATTTACACTTCAAAATATTACTACTAGAGAAGCACTTGAAGACTTAAGCAGGCTTATAGATAAGTCTTTTTACAAGAATGAAGCTCTGGAGAATTTTCATGAAAAAAATACTATGAAAAATTATTGCTTTAATAGTTTATACCCTTTGGATGTAAAAACTAAGATATATAAAAAAGGTGAAATTTATAATTTTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCATAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 1425942-1426167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032416.1 Clostridium fermenticellae strain JN500901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1425942 29 100.0 36 ............................. CAAATTATTTAATTTCGTTGAAGGACATGAAAATGC 1426007 29 100.0 37 ............................. CTACTGGATAACCGCCAACCATATTTTTATTTATTTT 1426073 29 100.0 35 ............................. TTTAAATCAAAAATGATGAAAATAAAAGATACTTT 1426137 29 89.7 0 T..A.G....................... | TT [1426142] ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 36 GTTGAAGTTGAACCTTAACATGAGATGTA # Left flank : GTCATACTGTCATATTTGTCTTTGATGATAACAAATTAATTGGATTCGGACGTGCAATTTCAGATGGAAGCTATCAGGCTGCAATTTATGATGTTGCAGTATTACCTGAATATCAGGGAAAGGGTGTTGGCAGAACAATTGTTGATGCCATTTTAAAGTGTATTCCTCAGTGCAGTTTTATATTGTATGCTTCACCTGGTAAGGAAGCTTTTTATGAAAAACGTGGGTTTAGTAAAATGAAAACTGGAATGGCATGTTTTCATAATTCAGAGGCAATGCGAACGAAAGGGTTTATTAAATAAATTGTGCATGAAGTCAAAGTTGATTTTCCAATCACCGTTAAAAGTTAAAGTGCCTAAGCTGTTTAAATTCAATAGCTTATAGCACCTTTTTACTGTGATTGTCTAAAATAAAAAATGGTTGGAAAAATTTCAGATAAAGCCTTTATTATCAATAGGGTTAGAGATATAATGGAAATAAAGAATGGCTATTTTACTCTG # Right flank : ATTTAATGTGGACAGATGCTTTTAACAGATGGTTTGCTACCGGTTGAACTTTAAAAACAGGCACTATTTATAATGCCTGTTAAATCGTACAACTGGTTAAGTTTATTTTTTTTGCATAATTGAAGATTACACTACACTGTATATTTTCACATCAGGAGCATCATCCCATAATGCTTTGAGTCCTACAAAAACATCATTTTTGAATAGTTCGCTATTTAGATATAATTTTGCGTGTTCTACACTATCGAAGCCATGGAGTACCTGAACATCTTCATCGCGGATTAAAAGGTTTTTAGTAAGTGCACCAGATATGCTATTCAAAAATGGAGTGCGGTAATCTGAATAAACCTTTGCTGCAGAGGCTCTTTTTGTACTGCCGATTTTCATTGTGATTTCAAGATAAGCTTTTACTTTCATATTAAAGTTCCTCCTTAAATATTGTTATATTTGTTTATTACACAATTAAAGTATATTAAAAAAACTATGTGGGTGAAAGATAT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTTGAACCTTAACATGAGATGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //