Array 1 698723-697394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEOO010000001.1 Listeria monocytogenes strain 170 NODE_1_length_748976_cov_33.028149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 698722 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 698656 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 698591 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 698527 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 698461 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [698452] 698393 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 698328 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 698263 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 698197 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 698133 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 698068 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 698003 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 697938 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 697875 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 697812 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 697746 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 697683 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 697618 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 697552 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 697487 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 697423 29 93.1 0 .......................C....C | A [697398] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8044-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEOO010000002.1 Listeria monocytogenes strain 170 NODE_2_length_512900_cov_36.183028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8043 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7977 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7911 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7845 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7779 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7713 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7647 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7581 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7515 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7449 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7383 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7317 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7250 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7184 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7118 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7052 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6986 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6920 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6854 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6788 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6722 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6656 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6590 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6524 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6458 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6392 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6326 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6260 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6194 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6128 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6062 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5996 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5930 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5864 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5798 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5732 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5665 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5599 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5533 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5467 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5432,5435,5440] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //