Array 1 198998-199922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZQ010000001.1 Prosthecochloris ethylica strain DSM 1685 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 198998 35 97.1 39 ..................................T CGAATACCACCTGGTCCGTATAGAGGTCGAAGCCGTAGG 199072 35 97.1 40 ..................................T TTCCACCATTCCGACGACGTCGTCGATCGTCAGGCTGGAA 199147 35 100.0 38 ................................... GCAAACGTGTCGGCAGCGGCAACGGCCGCAATGCGGTT 199220 35 100.0 37 ................................... TTGAGGTTATTACTTTCTCCATCCCTTCACATCCACT 199292 35 100.0 38 ................................... TTTGCATTGGGATTAGTCGCAGTACATTCAAACCGCCA 199365 35 100.0 40 ................................... TCGTACCCCTCTTTTTCGTCAGGAAAGACTGCAGGAAAGA 199440 35 100.0 39 ................................... ATGGTATCAAGCAGGGGGACTAACCCCAAAATGGCAAAA 199514 35 100.0 39 ................................... GGTGTGTTCGGTCCGACTACGAAATAACTTTTTTCTCCG 199588 35 100.0 40 ................................... TTCCATTCGAGAATCACGGCCGCCTCATTGCCATCATAGA 199663 35 100.0 39 ................................... CATTGATCCTCCCGAATACGGGAGCGGCGCGACAGGTAT 199737 35 100.0 37 ................................... AAAGGAGAGAAAGTCCTCCCAAAAGAACGATGAAGTG 199809 35 100.0 43 ................................... TTTCCTCACTTCTTTTATTCTCCGGCATCGTCTTTTGATTGAA 199887 35 91.4 0 ...............................G.TG | T [199915] ========== ====== ====== ====== =================================== =========================================== ================== 13 35 98.9 39 CTTTTGATATAATCGTACTCGCAGAGTATTGCGAC # Left flank : ATGTCAGGCGGCACATAGAAAAACAGGTCGGATTGCTGAAAGACGTAATGACAGGGAGACTCGAGGAATATGCGCCATATAAACTGCCTTTCTGATGAACACAAGAGAGCTCCCGATCGATCGATAGTTCTATACTCTCATCCGACTGGATGAAGCAAATTTCCTCTTTCGCTCACGACAACTTGGCAACATGCCACCATCTTCTGTTTATTTTTTAACCTGTTTTAAAACATGCCGTTAGAAGAAAAATACCGAGACCTCGTTTTTTCCTGATATGAAAAACAGTCAAAAACACGTGTATTGCATTATATATCAATACGTTAACCGCACCCTTGCAACCAAACGAGCCCTGGACGTTGTTTAACTCATTCATTTTCCGTAAGATAGAAATGAGCATAATCGGTAAAATCAGCTCTTTGTCCCTTGGCATCACTGGTTTTTGCACGAGCCTTGGATTTTGCTCTGTGAGCCCTTGCCAGACAAGGGTTTCCAGAGGTACT # Right flank : GTATTTGTGGTACAAACGTCAGATCAAAACCTGGCAAACAATCACAAATATGACGGCTTGTAACCAGCAAATCACTCTACAGCAAAAAGAAAAAGAGAAGCAATCATGGAGCAATTTTTTGAACAAGGGGTGGGGAATATCTTTGGCTGGGTGGCAGGTATTGTGGCATGCATGGAACTGATTGAATATCTGTTCACAAAAAACCTCCCGTGGATTTCTCGCATGTTTCGCAACGCATTTCGATGGGGGTATCGTGCCCTGTGGCGTACGCATGAGGGCAATGATGAGCGTTTTCTTGCTCTGAATTTTTCAGGTCATCCAGTATTGCCACAACAGGCGCATGATATTCAGAAAAAAATGGGCTGGCCGAACATTGACGTGATCGACGTGCCTGTAGGAACGGTTTCGGAAGATCAGAATTTTCTTCGCACTGCAACCCGCACTGTCGATAGAATTGATCTCCTGCCCAACGAATGGCAATCGTTTGCGCTTGTCGTGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGATATAATCGTACTCGCAGAGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 45504-45836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZQ010000012.1 Prosthecochloris ethylica strain DSM 1685 assembly_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 45504 35 100.0 43 ................................... ATTTAGGATCAAGATTGGTGTATCTTTCATCATGGTCCTGATA 45582 35 100.0 37 ................................... TTTCATGTCTTTAGGGTCATATATCTCCCCCTTTTGC 45654 35 100.0 40 ................................... TATCGAACGCTCTCAGTGAAAAGGTATTTTGTTGCGACGA 45729 34 91.4 38 .............C...-A................ ATCTCATCGGATTTCTCATTGAGAAACAATAGGGGACA A [45744] 45802 34 74.3 0 ........G....C....-.G........A.GTGG | A [45817] ========== ====== ====== ====== =================================== =========================================== ================== 5 35 93.1 40 GTAGACAGACCCGATTGTGTAAAGGGGATTGCGAC # Left flank : ATGGATAAAGAGACGATCCGATATGCTGAATGACCCGTGGGGGATGGCACCAACAATGACTCTCAAGGGGATGGATTATTTTGCACATCAATTGACTGGAGTCCAGCAGGAGAATGTTTGCGTGCTTTCTTTTGTGTGGGAAGACCCGATTGAGTGAGGGTGACAGGATTGGGCGGCAGGGAAAGGGGTTCAGGATTGTTGGCAAGAGCAACACTCGGAATGAGTGTTGATCAGTGACTGTAGGGCCAAAACCGATGGCTCATTTATTGTCCATGTGACAGGACAGTAAAAAATCATGTAGAGTGTTATAATATCGTAGGTTATCGCCTGCAGTCGTTCCTGCTGAGCCCTGGATGTTGGGTAAATGATGAAAATTCAGTAAGATACAGGTGATCCATAACTGCAAAATCAACCATGAGTCCATTGATAGCGCTGATTTTTGGATGAGCCCTGGATTTTTGTCTGGGAGGCCTTGTCAGGCAAGGCTTTCCGGAGGTAGG # Right flank : GATATTATTAGGGCAAAGTGCTGGGCGTGAATTGGAAGGCTTTGCCGATATGTGATTTTATGGGGCGAGAGGGGCAGATGAGGCCTCTTATCAGTGCAGTCATTCAATCGAGCAACGGTTTAGAACCACCAATCAGACTGCTGGAGGATATGGCGAATAATAAGCCGATGGCTAAAAGGTGGAGGACCCAGTCCCTGAAACGTTCATTGGAGGGGTGGACAGGGGAAAAAAACTTCAAGTGGCAGGCGATATTGTTTGCCTTGTGTTTGATTTTATTTGGAGAATGGTTTCCAGACGGGCTTGAGGGCTTCTTTTATTACCTGCAAGCGGTGAGCATGCACAGGGAATTGGTGCCTTGGGCAATCAACTGGAAGCTCGTTCTTTCGGCATTGTTTATCCTGTTGATATGGTGCATTTTTAAATCCTTGCCCAGGTATACGCAGATCAAGGTACATGCTGGTCAGCCTAAGACGTACAAAGTGCTTGCTGTTTTCCTGAGT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGACAGACCCGATTGTGTAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 56026-56441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZQ010000012.1 Prosthecochloris ethylica strain DSM 1685 assembly_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ======================================= ================== 56026 39 100.0 36 ....................................... GCTGCTGCTGCGGCCGGAGACTTCTTTTTTCTCGAA 56101 39 97.4 38 ...........................A........... TTTCTCGAGCGAGAACCTTTGCATACAAACCCTGTGCA 56178 39 100.0 39 ....................................... AAGTTGACCAGTATCGATAATTATCATCTTAATATATTT 56256 39 97.4 35 .....................................G. ACCTCGCAAAAGCCTCATTTGGGCTTAACCCCTGC 56330 39 87.2 34 ...................T....A........C...GC GAGACCATCATGTACTGCGAAGAGCTTCAACAGA 56403 39 79.5 0 ......AC...........T...........G.GTGG.. | ========== ====== ====== ====== ======================================= ======================================= ================== 6 39 93.6 37 GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGACAT # Left flank : GCAGGGAAAGCTCAGACGGCTGATCGAGGTTACCCGGGACAGCGTCCGGTTCTACCGGTTATGTGAGGACTGCTGTCAGGATATCACAATTATCGGGGATGGAGAGGTGACGCATGATGAGGAGTTTTTTATTGCATGAATGCAGAACGGTGAAATGAGCAAAGGTGTGTAGAGGATGTGGTGGGTTTATGAGACGGGACTTGTGATTAATGAGGATTTAACCTGTTGTTGCAAAGAATGTTATGGCTTTTTTACACGGAGCTTTTTCTGAGACTCGATCAGCAGTGTTCAGAATGATGTAACCTGTTGAAAAATAATGTGTTGCAGGAAAAAGAACGCGAAAAGCTCCGTGCAGTAAGTGTAAGTGAAGAAAATTCAAGAATTTGCAAGCTTGTATGATGAGCGGAAAATGGCGAAATTATGATGGAGATGTTCTTTTTTCAGACATCCGTGAAAAACGCTTCAGAGAGCCTTGTCTGATGCGGGTTTCCGGGGGGAGA # Right flank : ATTATTAGGGCAAAGTGCTGTGCATGATTCAGAGGGGTTTGAGGTCAGGCGTCAAGCGTCGGGCGGTAGGGGAAAGAGATATTGTGACGATGCAGTGTGATTCTTACTGTCACATTTGAGGAGAGGCTTTTGGCCTCTTTTTTTATTCGGTTTGGCAGTAAACGGCATTATGATCCCTGCACGCCGGTTTTTTGCGAACAGAGTGGCTGCAAATTCAGTCTCGGAAAACGATCGTTTTTTGAGAGTAATTTCCAAATTTTGTGTTTCAAAAAAATCTAAGCAGCAAGTGTTTCCTCCGTTCCGTCGATAAATTTAACGCCGTTAATAACTTTTGGAATCAGCTTGTAACCACGCAATCGCCGCCACCGTTTTTGTGCTCGTTCGGCAAGTTTGAAGACCATTGCCAGTGTGGTTGCCATGGTTCCCTGACCTCGA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.28%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 34698-31663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZQ010000007.1 Prosthecochloris ethylica strain DSM 1685 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34697 30 100.0 36 .............................. GTGATCTCGCCCGTCGTCTTCGAGGAAGCCGAGGTG 34631 30 100.0 37 .............................. CAAGGAAAGCAAAACCTGATTCTATCGCCCCACTCTC 34564 30 100.0 38 .............................. TCGTTATTCCTGCTGGTGATGAGTCGCAGCCGGTTTGC 34496 30 100.0 37 .............................. GCGGAAGAACCGTAAATGCCATCGTTTATCCCCCGGG 34429 30 100.0 35 .............................. AATAGCTACGCGTGGCCTGCCCACGGGACGCAAGC 34364 30 100.0 36 .............................. CATATCACATCCCCCTTTCAAAAATCTCCCGCTCGT 34298 30 100.0 36 .............................. ACGGTCATTTCCAACGCAACGTAGCGGAAATCGTTT 34232 30 100.0 38 .............................. CTATAAAGGCTGTTTTTGTCCAATCCATAAATTGTTAT 34164 30 100.0 38 .............................. TTGCAGCCCGCCTGCCGGCACGAAAACAGCCGCTGGTC 34096 30 100.0 38 .............................. CAGGTCATCCGACCCTCTCGGTGAGCGAGAGCTTCAGG 34028 30 100.0 37 .............................. CAACACCTGCACAAACACATTGATCTATCTGATGTAC 33961 30 100.0 36 .............................. TTCTTGCAGGGAAAGAGACCCTTCAGGGGCTGGCGT 33895 30 100.0 36 .............................. ACATTGCCAAATGGTTTTTTTTGATAAGATTTCTGA 33829 30 100.0 36 .............................. GCTCTCGAAGTTTTTGAACGCCCTCATGGCTTTTTC 33763 30 100.0 38 .............................. ATTTGCTCGATCCTCCAGCCATACTCCGACGTAAAGCG 33695 30 100.0 38 .............................. TTGTAGCTGTCGATAATCATCTTCAGCTCATTGGCCTC 33627 30 100.0 36 .............................. CTCCATGCGCTGGCCCCATATCAGAGTATGAGTGTC 33561 30 100.0 37 .............................. TCTGTAATTTTGTCATGCGGAACAATGTAGCCGTTGC 33494 30 100.0 37 .............................. GTCTTTGTGAAAAATCCGCCCTTTTCGGCGGCAATTC 33427 30 100.0 37 .............................. GACGTTTTTGCGCCTGCAGCTCCACCTCGGATCGCCG 33360 30 100.0 36 .............................. TACATCTCCCCTGACGCAACGTTCCCGGCGGGTTTT 33294 30 100.0 36 .............................. GCAGCATCTCCGTTACGGCAAAATTGACGGACCTTT 33228 30 100.0 37 .............................. ATGTTTGAACTGGTTTTGAACGGGCATACATATCCCC 33161 30 100.0 37 .............................. TCTGACGCAGAATCAAGAAGCGTGTGCGACCGCCGTG 33094 30 100.0 38 .............................. TCGTAGCCGGAGGCTTTTCTGCCTGGCTGTCGTGGGAG 33026 30 100.0 38 .............................. TCAGGCATGGTCGGCTATTCCCGATCAGATGTGGCAAC 32958 30 100.0 38 .............................. TGGGTGCGCCTGTAGATCTTGAAGCACACCCGCAACGG 32890 30 100.0 37 .............................. TCACAATCGCCTTGTTCTGGGCGCGTTTCACCGCCAT 32823 30 100.0 37 .............................. AGATCGAGGGCCGTCATGTGCCGGTCGACCTCATCGC 32756 30 100.0 35 .............................. TCGGACTCGCTGCCAATCTACGGCTTTGCCGATCG 32691 30 100.0 37 .............................. GCGGTACTAACGCAACGATTGCTCAGCTGGAAGCCTG 32624 30 100.0 36 .............................. ATATTCCTGAAGACGACACCCCGATTTGACAACCAT 32558 30 100.0 38 .............................. TCAATTAGCCCTACGCTTTTTGCTCTTCTGGCATGATA 32490 30 96.7 36 .............A................ GTCCGGGGGAGCATGGGAAAACGACAGATATATCGG 32424 30 96.7 36 .............A................ TCACAAAAACCGGGTAAAAAATGCTGCAGACTTCGC 32358 30 100.0 37 .............................. TCAATCACTGTGAGCCGGTCACCATACTCCGCAGCAG 32291 30 100.0 36 .............................. AAAAGGATCAAGATTTCTTCATTCATCGCGTCAGCC 32225 30 100.0 37 .............................. ACGCCGTTGCGGCCGTAAATTCGTACTCCTCGAAAGC 32158 30 100.0 37 .............................. GACGTTGTTGTTGATGCGTCTGATGCTGGCGCAGTTA 32091 30 100.0 36 .............................. ACCTCAAGGAGCGGCAAACTGCAAGGCCGGAAAATC 32025 30 100.0 35 .............................. ACTTTTCATCAACTCAATCTGTCTTATCATGGCTG 31960 30 100.0 36 .............................. ACAGTAATCACCTGACTTACCTCCATTCTCATTTCT 31894 30 100.0 37 .............................. TGAAGAAAAAGGGTTGACATCGAGGTATAGATCAGTG 31827 30 100.0 38 .............................. GGCTTTCTCTGCATACTCCCGCTCCTTGGCAAGTGAAT 31759 30 100.0 37 .............................. ATCGTCCCGTGAGCCATCGCAAAGCTCTTGCGCTTAC 31692 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.9 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : ATCGGATAAGATGGAAGAAGCCCATCTCTGGCAGCTTAAATATTATCTGTATTATCTTAAAATATCAGGAATGGTGGATGTTACAGGAAGGCTTGACTACCCGAAGCTCAAGAAAACTCTTCAGGTTGAATTAACAAAAGATGACGAGCAGAAAATCCAGGGGGTTTTCGATGATATGACGGTCATTGTACATCAGGAAGCCCCTCCAGAGCGGATCAACAAAAAGTTCTGTAAATCATGTGCATATTATGAATTTTGCTGGGCTTAGCCTGTCTATGTATTGAAAAAGATGTCGTCGGGCAGCCGAGATAAACCTGTTAGAGAGCGGAAAACCTGCCGAAAAAACCAGCTTTGTTTTACTATCTGCAATGAAAGTAATAAATTAAAAATGTCGTCGGAGTCCCGGTTTTTTTCGGTTATCACAACGTGACGACAAATTTCAGCGATTTTAGTGATCAGACATCAATAAAATCGCCCTTCTTCAGCCGTTTACCTCACGG # Right flank : ATGAGGTCAGCGTTGATCCTGGTGGATTGAAACTGTGGGGATCGAGCAAAGCTTAGAGCAGAAGATGGTCGTGCCCTACGTGTGAGTGGATTGTCATCAACTTGTTGGTTCTTCTCGCGCCTTTGTGTTTCATTACTTTTTCGGTTGATCGGCATAGTTTTCAACCCTCCCATTGGGTGATTTTCTATTTCTGCTTACTATTGCATATGTTCCTGTTCCTTGATCCTGAGGCAGGATCAAGCTGATCACGGTCGGTGGGAGGACGTTCTGTACAGCAGGTTTTGATATTTCTCTATGGCACTTGATTATATGACACTCGATGTGCTTCGCCTGAGCCATCCGGCTTGGCGGTTGTTGCGGGCGCAGCATGCTCCGTTTATTGCGGGGTTTTTGCATCGGGTGTTTATTGTGCCGAACGTGCGGGTTCTGCCTCAGGCGGACCTGGAGGAGATGCTGGAGGACGAGCTGTTTGCGTTGCGTGAGCAGTTGGGGGATGAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //