Array 1 10-744 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900069.1 Thioalkalivibrio sp. ALE23 F573DRAFT_scaffold00039.39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 10 27 100.0 32 ........................... TTTCTCGACGCGGATCGTGTCGCCTCGGCCGC 69 27 100.0 32 ........................... CACGCCAGGGGTTGATGTGAAGGGCGCAGAAT 128 27 100.0 32 ........................... AACCCCAGCCAGATCAAGTCGGCCGAGTTCAA 187 27 100.0 32 ........................... CTATCTCGGGTATGTGCTGGCGGCACGGACGC 246 27 100.0 32 ........................... GCCCGGGTGTGGCCTTGCGATTCGTAGTGCCG 305 27 100.0 32 ........................... GGATCGGCTGGCCGGAGGCCAGCGCCCGTTCC 364 27 100.0 32 ........................... TCACGCTGATCGGCGGGATCCGTACTTCAGTG 423 27 100.0 32 ........................... CCATAGCCCGCCGCTGGCTCACAGCGTGCATT 482 27 100.0 32 ........................... AGTAGCTCTCGGACTTCGTCGACGATCTTCGT 541 27 100.0 32 ........................... AGCGCTTCAAGCTCATCGAGGTACCGCTGGTA 600 27 100.0 32 ........................... CGACGATCCGGAGCGGATCGGCCCGGCCAGAC 659 27 100.0 32 ........................... AATACCGGCGATCACCCGGAGTGAGTGCATTC 718 27 77.8 0 ...................GAA.AT.A | ========== ====== ====== ====== =========================== ================================ ================== 13 27 98.3 32 GTTATCCGCCGCATGGCGGCTTAGAAG # Left flank : GCTCGCGCAG # Right flank : AATAGCAATGTTGGCGGCCTAACGGCCGCCTTCCCGATCATCAAACTGAATCATCGAATCAAGAACATACGCCCCGCACTCGATTTCCATCGCACGATCGCCATATTCTCGGAACTCACGGCGAACATCATCAAGGCTTTGGGATAGCCAGGAAGGAGAACCTTCAACGACAGAGACATCCTTGACCGGGTCGAGAATCGTGCTTGTGACGTTTTGTAGAGACCAATGCTCATCTTGTTTTACGAAACGAAGGAGAATAGTTTTATTGTCCCGAAGGGGGAACTTCTCGTAATGTGCGAGGCTTATCCAGTCTTTTTCATGTCCGTCCCGCGATTGAATCGCATTCATCCCGTCAAACATCGCCCTCTCAACCGCGCGGTCATCAAGATCGGCAAACGGCGTTTTGGGCGTGGATGTCGAGCCAAATTTCAGCGTAGAGGTCAAGGGAAAGTCCTCGGATGAAAAAGATTCGCCGCCTGTGTTGAGGAGATCCGTCATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-F [Matched known repeat from this family], // Array 1 315909-314695 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900034.1 Thioalkalivibrio sp. ALE23 F573DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 315908 36 100.0 36 .................................... GTTCGGCACCAGGCGGCGTACTACCTGGTAGACGAA 315836 36 100.0 37 .................................... CACTACCTGCCGCCCGGACCCGAACGATGGAAAGAGC 315763 36 100.0 38 .................................... AACTGGGAAAACCTGACGGCGGCGTGGTATAGAGCCAA 315689 36 100.0 37 .................................... TACTCCGCACGCAACGCCCGAAGCTCCTTCATCACTT 315616 36 100.0 35 .................................... ATCCCTCTCACGGTTTTCGCCGCAGGAGCGTTCTG 315545 36 100.0 39 .................................... CATTGCCCGTCTCTTCTGAGTCTAAGTTTCGTTGCTGCC 315470 36 100.0 37 .................................... CCCTGTAAGGCGGACAGGTCGGCAACGTCGCAGTAAC 315397 36 100.0 39 .................................... AGACATGGCAGGTGTATATACCTACGCAGCGGACGCCGT 315322 36 100.0 39 .................................... CAGCCCCTTGGATTGAGTCACTATTCTTCGTCATACCGA 315247 36 100.0 37 .................................... GACGGGCCCATCAAGGTCGATATGGTTGTGGCGTTGG 315174 36 100.0 37 .................................... ATCTCCGTGCTTGAGCGACCCTGCTCGCGGTCCTCAC 315101 36 100.0 40 .................................... GACCAGCAGACCTGGACCGGCGAGTGGTCCGACGAACAGA 315025 36 100.0 38 .................................... GCGTCGGCGATCAGTTCGTGCCAGCCTTTGCGCTCCGT 314951 36 100.0 36 .................................... CACCAGTGCCGCGGCCGCACGTATGCGTTCCGCTTC 314879 36 100.0 36 .................................... GCGACCTCGCGATCAATCTGACCCAGCCGCTTCTCC 314807 36 100.0 41 .................................... AAGTACGGCTTGCGGCCCAGCGGGTCGTAATTGATCTCGGC 314730 36 91.7 0 ...........C....T................G.. | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 99.5 38 GTGTTCCCCGGTTTCTGGCCGGGGTGGAATTGAAGC # Left flank : CGGCCTCGGCATGGTCGGCGGCCTCACCCATCATCCTGCCGGGTTTCGACACCAGACGCGGCCGACCGCGCCCCGGGAAGTCCGTCCGTCGCCTGCTCCGGCATGCCGGGATCCCGGAAGAAGCCGTTCGGCGGGTACGCCTCGACGAGGCACCCCAACTTCCGGGGGCCCAGCCGGCGCGGGCGGTGGAGGTCCCGCATTACCTGCGTTCCTACCCGCGTCGGTTCGTCTCGATCGAGTTCCACACGCCCGTTCCCGGGCCGTTGATTCTCGGAGCGGGTGAGGGGTGCGGTCTCGGACTGCTGACCCATCGCGAGCACCCGAGTGGCGCGCCGGCACCCCGGGAGCACTCGCAGGATGCGAACGATCGATAATTCAAAGACTTGTTAGGGATACTGAATCCCAGCCAAGATGACAAAGGCGAATGGAGACCCGATTCAGCGCCACCACTCGCGAAAGCACGTTGAGAGAGGCATTATCAGGGCGTCGTACGCGAGCCT # Right flank : TCTCCAGAGCTGCCCGGTTATTGGATCCAAGAGCTGGTGTCCGCACCCACGGGGCTTGGCAACTTCGCCGCGAACGCACGTCGGCCAAATTGGAGCGAATAGGGTTACTTCTGCCTACCCATCAACTCTCTACGGCGCTTGGGTACTGTCGGAACGAAGCGAAAATACCCGGCGCCCCCCAAACGCGAAAAGGCGGGGACCTGCCCCGCCTCTTCCTACAGCCCTTCAAGTACTCCCCAGCCAGCCGGCCGGGCGTTCGGGATCTCTCGGGGGCATCCATACCGGGCGCCCGCCGCAGAACCGATGCCAGTAGCCCTTACGGCCCGCCCGAAGTGTCCGCTGCGCAACATCCGCCTGAGCGCTGCACTGGTCGAGCCCCTGAACCAGGGCCGCCATCGGCGCACCATAGGTCTCGCCGCTGCGGTAGGCGGCGATGGTGAGCCAGAGCGCGTCATGCGCATCCCGGTCCCGCTTCCGCAGCGCGGCCATGGGTTCCTGCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGGTTTCTGGCCGGGGTGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //