Array 1 67925-67596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPB01000035.1 Erwinia amylovora NBRC 12687 = CFBP 1232 strain type strain: CFBP 1232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67924 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 67864 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 67804 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 67744 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 67684 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 67623 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 79372-77388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPB01000035.1 Erwinia amylovora NBRC 12687 = CFBP 1232 strain type strain: CFBP 1232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79371 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 79310 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 79249 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 79188 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 79127 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 79066 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 79005 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 78943 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 78882 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 78821 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 78760 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 78699 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 78638 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 78577 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 78516 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 78455 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 78394 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 78333 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 78271 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 78210 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 78149 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 78088 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 78027 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 77966 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 77904 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 77843 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 77782 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 77721 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 77660 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 77599 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 77538 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 77477 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 77416 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 92442-90279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPB01000035.1 Erwinia amylovora NBRC 12687 = CFBP 1232 strain type strain: CFBP 1232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92441 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 92380 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 92319 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 92258 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 92197 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 92136 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 92075 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 92014 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 91953 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 91892 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 91831 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 91770 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 91709 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 91648 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 91587 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 91526 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 91465 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 91404 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 91343 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 91282 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 91221 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 91160 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 91099 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 91038 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 90977 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 90916 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 90855 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 90794 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 90733 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 90672 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 90611 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 90550 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 90489 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 90428 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 90367 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 90306 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //