Array 1 118897-116607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070257.1 Streptomyces californicus strain FDAARGOS_1213 plasmid unnamed3 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 118896 33 93.9 28 ..............................GA. ATGGGAACGTAATCGCATGTCTGAGGAG 118835 33 97.0 27 ................................A GCAGCTCAAGACCGTGGGGCCCGCCAT A [118806] 118774 33 93.9 28 ..............................A.A ACGGCGCCGGACCGCTGACACGGCCCGA 118713 33 93.9 28 .............................TC.. TGAGCTGGCGGCCGTGGATGATGCAGGC 118652 33 100.0 28 ................................. CCAGCATCCCGGGCCGGGCCCTGATCAA 118591 33 93.9 28 .............................G..C GGAGGACGGGCACGACTGCGGTCTGGAC 118530 33 100.0 28 ................................. CCAGCATGGTCGACCTCACCGCGCGGGA 118469 33 100.0 25 ................................. ACTCCCAGCAGGACGCCATCGAGAA GGG [118439] 118408 33 87.9 28 .............................GAAC ACCTGATCGTCCACTCCGCGCACGAGTT 118347 33 87.9 28 .............................TGGA CGCCGTACAAGGTGACCCGCTCGACCCC 118286 33 93.9 28 .............................TC.. AGGCCCAGACCTCTGCCAGTCTCAGACT 118225 33 93.9 28 ..............................G.A CCTACGGGCTCGGCTACGTCGGCTCCCC 118164 33 97.0 28 ..............................G.. ACCGGGCTCGTGAACTGCAACGGAGGTC 118103 33 90.9 28 ..............................CTC TCCAAGGCATCCTGCGGGCCCTTCCGCG 118042 33 90.9 28 .............................GC.A TGGCCTTCATCTACTAGTCCACCGCACG 117981 33 90.9 28 .............................AG.A GGCCGTGCGGTTCGCCGTCGAGACCGGC 117920 33 90.9 28 .............................GC.C CCGTGGACTTCGTCGGGTACGCGCAGAT 117859 33 100.0 28 ................................. CCAGCGTGGTCGACCTCACCGCACGGGC 117798 33 87.9 28 .............................GCGA TCTGGCGGAGGTGAGCGCCGGACGTTCC 117737 33 87.9 28 .............................TAGA AGTGGCGGGGCTGGGCGCCGTTCACGGA 117676 33 93.9 28 ..............................CG. GCGCGTACCAGCGGCTCATCACCGGGGC 117615 33 90.9 28 ..............................AGA TCGCCGCGGTTGACGGGTTCTCCATCGA 117554 33 93.9 28 ..............................C.T TCGGCATGCTCATCGGCTTGAGGTCGGG 117493 33 90.9 28 ...........T.................AC.. CCATGATCCGTTCCAAGACCTTGTCGTC 117432 33 93.9 27 .............................GC.. CACGACTTCCGTCCAGCCCTCTCCGGC 117372 33 90.9 28 ..............................AGC GTGCACCGTCGGGCGGCTGCTCGATGGC 117311 33 93.9 27 ..............................AT. GCGCGATGCCGGATACGGGCTCAAGAC G [117283] 117250 33 90.9 28 .............................TA.A CCGGTAAGTACAGCGGTCTCGGCCGCAT 117189 33 87.9 28 .............................GCGT ACGGGCTGTGCGCCGACGACTGGCCGAC 117128 33 87.9 28 .............................GCAT CCGCGCCTACGCCTGGCGGGCCGCCCTC 117067 33 93.9 28 .............................GC.. ACGGCTTCGTCCCGATCTCCTACGAGGC 117006 33 87.9 28 ...............A.............TGG. CGGCGTAGGGGCGGGTCGCGACGTACGG 116945 33 90.9 28 ..............................GAT CCAGTCCAGTAACTATTCCCCGGGGTCG 116884 33 93.9 29 ..............................G.C CAGGAGGCGACCCCCGGCCGGGACCAGGT 116822 33 87.9 28 .C...........................TGT. GGGAGAGACCGCCAATGCCGAAGTCGTC 116761 33 93.9 23 ......T.......................C.. GCATCATCGTCACGACCGGCTAC CCGGA [116728] 116700 33 90.9 28 ..............................AGC TCAAGGCCAATAGCAAGGCCACCCGGGT 116639 33 81.8 0 ..............G..A...........ACGT | ========== ====== ====== ====== ================================= ============================= ================== 38 33 92.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTCG # Left flank : CCCACGCATCGTCCGGGACGTCCAGAGCCTCCTGACACCACGCTCCACAGATGTCACCGACGAGGACGAACCACAGGAGAAGCGCGACATCCACCTGGTCCACCTCTGGGATCCCAAGGCGGGCGCCCTTCCCGCCGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCCTGCTCGTGATCGCCACCACGGCCGTTCCTGACCACCTCCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGAACAACTCTGGCAGGCCGTTACCGAGACCGTGGAGAACGGAGCCGCCGTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCGGTCCGAACCGCTGGCACCCGCCGCCGCGTCCCCGCCGATTTCGACGGACTTACCCTGATCCGTATGACCGCCACACCGAAGGTAAAGGAAGTGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : ACGCACCGCCCTCCAGGACGACCTCCGGATTCGCCCCGCCGACGCTGTCGTACAGGGCTGGCGCAGAGATCGGACCGGCAGCAGGAGGGGGTGTGCGTCAGCTCGTCGAGGGGTTGACGGTGAGGGCGGCCGTGCTGTTCGTCAGGTCGGGGTCGAAGGTGCGGACAGGGGGTTCGTAGGCGTCGTTGTAGAGGACGGCGCGGCCGGTAGCGTTCGGGATGACCTCGTCGATATGGAGGGTTGAGGGGAAGGCGTGGGCGGCGAGCTTGCCGGATTCGGTGAGGTAGATGGGGGTGTTGCAGCGGTAGCGGGTCTCGGACTGAGACCAGCAGCTGTCGGGGACGGGAGCGACCGACGTGCCGACGGGGACGTCGATGTCGATGGTCGCGGCGGGTTCGCCCGCGCTGAGGGAGGCGACCCAGGCGGGCCCGCGTTGTGGACGGGGACGGTGTCGCCGGCCGCGCCGGAGACAGTGGAGGCGGTCAGCCGGTAGTCGGCCT # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128778-129846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070257.1 Streptomyces californicus strain FDAARGOS_1213 plasmid unnamed3 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 128778 33 87.9 28 .................A............CCT TCTTGCTCAAGGGCGTCACCGAGGAGGC 128839 33 93.9 28 .............................G.C. CCACCATGAGCGACACCGAGGCCCAGCT 128900 33 97.0 28 ..............................G.. CCGTCATCATCCGAGTAGACCGTGCGGA 128961 33 100.0 28 ................................. GGACACCGCCGAGCTGCTCGCGGACGTC 129022 33 100.0 28 ................................. GGACACCGCCGAGCTGCTCGCGGACGTC 129083 33 97.0 23 ..............................G.. TCCTGGCAGCGCGTCATCGCCGC CGGCC [129110] 129144 33 90.9 28 ..............................GCT ACGTCGCCAAGCTCGGCCCCGGCGACTG 129205 33 90.9 28 .............................GT.T TCGACGGGCTCGACAAGCAGCTGCGGTC 129266 33 90.9 27 ..............................CCG CCAGCCACCACATCACGACGTGCCGCC 129326 33 87.9 28 .............G...............TC.C TGACGGGCGGGAAGCTGCCGCAGGGCAA 129387 33 90.9 28 .............................ATC. AGAGCCCGTCCCGGGTCATGGCGACGAT 129448 33 84.8 28 ...........A.................GGAG CCGACCAGTGAGCACGACGATCTTCAAG 129509 33 87.9 28 .............................ACCT TTGGGGGGACTGCTTCAGGCCCGGAGCC 129570 33 90.9 28 .............................ATC. GGTGGCAGATCGGGCAGGTGTTCACGCG 129631 33 90.9 28 ..............................GCG GCTGCCCCAGTTTCCGGGGCTTCGACAT 129692 33 90.9 28 .....T........................C.G AGAGCCCGCGCAAGGGCCGATCCAAGCA 129753 33 97.0 28 ..............................C.. TCTAGGCGGGCTGCACCTGTGACCACCG 129814 33 93.9 0 .............................G..G | ========== ====== ====== ====== ================================= ============================ ================== 18 33 92.4 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGA # Left flank : GCAGGCCAGCACACAGGCCAACGAGCGCCCGAGCGCGATCCCGCTCCCCGGCCAAACCCATTCCTCTAGCTATACACAACCTCTGGTTCTCCGACAGGTACACATCCCACAAGTGAAGCGCCATCGCAGCCGCGTCAAGAAGGTGCCTTACCAGCGGGTAGGGAGGCAACGCCGGATCCAACCCACGGAACTTCCCCCACGCCGATTCATCCACCACGCTCTGTCTCTGCACCACGCCAGCCCTCCCTGATCCGCCACTCGCCACGCTCCCGCGACCTAAGCCAACCTGCCACCGATCGCATACAAGCACCGGCACTGACAGTGATACCGCTACTCGCAGTCCGACGGCCGCCAATCGGTCAATGACGGGCGTCGTGCTCGCCTCGACTACCTTGCAAGCTGCGCCTGGATACAGTGACGGCGTGCAACTGACTGAGCGCCTCACCCACTCAAGAATGGCAAAGGAAGTGCAAAGCCACTCTTAAGGTGCAGGTCAGGAA # Right flank : GCACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGTTCGCCTGAGAGGCGTTGCAAGGCTCCTCCGGGAGTGTCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGACGCATAGCTCCTTTAGGGCTTGGCGGCCGTCGGCGAAGTGCTCCTCAGGTTCCCGAATCGTTCGCGGAGTTGCCGGTCGGCGGCGGCCTGGATCTCGGGGCGGGTGTGCTGCTGCCTGGTCCAGGTGGCGCGGTGGGCGGCGATGGCCTCGCGGTAGCCCTTTGACGGGTCCGGCCGCGGTACCGGCGCGGCGGGCGCGGTCGGTGGGGATGTCGGTTCGGCGGCCGCCGTGGAGGGGCCGGCCTTTGCGGGTACGGGCGCCAGGACGTGCAGGGCGCGGACGTTCGCGCCGGGCGTCTTCTCGTTGGCCGCTGCGATCAGTTTCGGGGCGCTCCAGCGCAGCTTCGTGCC # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3308992-3308718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3308991 30 100.0 31 .............................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 3308930 30 96.7 31 .............................G TCACCCGGCCGCGCCGGGCCCACATCCGGTA 3308869 30 93.3 31 ............C................G CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 3308808 30 86.7 31 ...........TGG............T... GCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 3308747 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 89.3 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Left flank : CCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCCCCGCAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACGGGCAGCGACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTCGTCGGGCAGGTCGGGCATACCGCAGCCCCGGGGCCCACGCCTGCGAAAGTCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACACTGCGGCAGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGCAAAACCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGTGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCGA # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3399649-3400287 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 3399649 30 96.7 31 .............................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 3399710 30 96.7 31 ...A.......................... GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 3399771 30 96.7 31 ...A.......................... CCATCAGCGGCACCCACGCGGGGCGCTGAGT 3399832 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 3399893 30 96.7 31 .............................A GCGGCTTCGCGCTCGAATTGTGGGCGGAGGT 3399954 30 100.0 31 .............................. GCACCACACCGCTGGCCGCTCTGGCCGCCGG 3400015 30 100.0 31 .............................. CCCTTGGTCGGGTTGGCCGCGTGAAGGAGCT 3400076 30 100.0 90 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 3400196 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 3400258 30 80.0 0 ......................CCAG.GT. | ========== ====== ====== ====== ============================== ========================================================================================== ================== 10 30 95.0 38 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : GAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCAGGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCCTGCGCGTAGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTAATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGCTCCGTCTCCGCAGTCCACAGACGGGCGGCGTGCTCGGTGGTCTCGCCGTGCTCGCCCAACTCGCACAGCACGTACGGCTTTTCTTCGAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCA # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3403781-3404849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3403781 30 93.3 31 ..............T..............A GCGATGCGAACACGGGAGGATCTCCTGGACG 3403842 30 96.7 31 ..............T............... TCCTGACCGTCCTCGGCGACCGGGACACCAT 3403903 30 96.7 31 ..............T............... CCCTCGCCCACCACATCCCCCACGTGCAGTC 3403964 30 93.3 31 ..............T..............A GATCCGTCGCGCTGATGCTCACCGAACTCGC 3404025 30 96.7 31 .............................A GGGCCTGCGCCGCGAGGACCATCTCGCGGGC 3404086 30 100.0 32 .............................. GCGATGACACGGTCATCACGGCCCGGGGAATA 3404148 30 100.0 32 .............................. CTCACGGTCTCAACGCCGCGGTGGCGGTGTAC 3404210 30 93.3 31 ............................TC CGGGCGGGCCGTCCACGTTGACGGTGAACTT 3404271 30 96.7 31 .............................T GCTGGCCCTTGTTGCCGGCCCAGGGGTAGTC 3404332 30 100.0 31 .............................. GCTGGCACCCGCACATCCACGCCATCGTCCT 3404393 30 96.7 31 .............................T CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 3404454 30 96.7 31 .............................C GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 3404515 30 90.0 31 .....................A......TC CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 3404576 30 93.3 31 ...........A.................A ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 3404637 30 93.3 31 .CA........................... CGGTCGACATCTCGGGTTCTCCGGTCCAACC 3404698 30 96.7 30 .............................C GGGCGAGGGCGGCACCATGACGCCCGGCCA 3404758 30 96.7 31 ......................C....... CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 3404819 30 83.3 0 ...T......T...............A.TT | C [3404844] ========== ====== ====== ====== ============================== ================================ ================== 18 30 95.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGATATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : TGTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGGGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCTCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACTCGTAGGGTTACAGGGATCGAGCACGAAATACCAACCCGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATCCCGCCGAGCAGTTGGCATGGCGCCGGATCACCGCGCAGCACGGCGACCGGCTCGGTCAGATC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3430167-3430440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3430167 30 93.3 31 .......T................T..... GGTGCGGGGCGGTGCCCGGGTGGTCGACGTA 3430228 30 93.3 31 ........................T....C CCGCCGCAGGAGCAGCCGCCGTGGGCGTGGC 3430289 30 96.7 31 ............................T. CCCCGGTCGCCCACCGCCGGTGAGGCTTCTG 3430350 30 100.0 31 .............................. GCCTCGCCGCCGTGATCGAGCAGGTGGTCGT 3430411 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGGCAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCACCGGACACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGACCCAGATAGGACCGGCAGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGCTATGCCGATTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCAAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTCCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4588586-4588130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4588585 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 4588524 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 4588463 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 4588402 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 4588341 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 4588280 30 93.3 31 C............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 4588219 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 4588159 29 80.0 0 ........-..C.GG......C.....T.. | T [4588145] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTGCGACAGAAGGTCGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCGCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4592206-4591872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4592205 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 4592144 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 4592083 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 4592022 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 4591961 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 4591900 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : AAATCCCACCCCACATCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4597185-4596608 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4597184 29 96.6 32 .......G..................... GTGCCGATGGGGTCGAAGGGGCTGTGCATGAA 4597123 29 100.0 32 ............................. GGAGTCCTCCGCCTCTACCGGCACATCACCAC 4597062 29 100.0 32 ............................. CGTTCGACCGCCATCGGCCGCTCGATCTTCAC 4597001 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 4596940 29 100.0 32 ............................. CAGACGGCGTTGATGCGCCCGTCGAAGTAGTA 4596879 29 96.6 32 ...........C................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 4596818 29 100.0 32 ............................. GTGCGGGCCATGCTCATGGGGCGGATTCCGGT 4596757 29 96.6 31 ....................A........ CAGCCAGCCCACGATGCCTATCTCCGGTGGG 4596697 29 96.6 32 .......T..................... CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 4596636 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCGCGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAAACAGGTCGATTCACCCCGAAGGTCCTGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : TCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4600598-4600261 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070254.1 Streptomyces californicus strain FDAARGOS_1213 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4600597 29 96.6 32 .........A................... GGCTACCAGGCCTGGCCGAAGTACACGAAGTA 4600536 29 89.7 32 .C......................AC... CAGCCAGGGAACGCGTACCTCAGCGCGAGCGG 4600475 29 96.6 32 ............................T CCTCGGCTGCCTCCTCCGCGCCGTGTTCCTCC 4600414 29 100.0 32 ............................. CCGGCTGGGTCGACGTGAACGTTCCCGGGTGG GGG [4600393] 4600350 29 100.0 32 ............................. CCATCGGCGGCCGCCCTGCGGAATGGGTCAAG 4600289 29 89.7 0 .............A..........CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGAGGGGCTGCCGGCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAGACCCGCAGGCCACGAAGG # Right flank : CGGGCCACCCTGGCCGGGCTACGCCGCCCAGTGCTCGCCGCGCGCGGGGACGGCCCCTTCTCCGGCGGGATGAGCCGGGGGCGCAGGGTGCGCCCTGCGGGCCGGAATCACCTGGGCCGTGGCACCCCCGCCTCAGCCCAACCGGAGTGTCGGGCTGAGGCGCGTGCTGCGGTCAGTGGCCGCATATGTTGCAGGGGTAGGCGGTCTGGCTGATGCAGTTGCCGTGATCGTCGTAGATGTAGATCACGGACCTCTGTCCAGGACAGCCGGGGGTGCTAGTGCACCCGATGGCCTGGTCTTCTTGGTGCCCCATGGTGATACCTCGCCTTCTGCTCGGAGGTGGGTTCCCACGTCCTCCGGCAACCAGCGCAGAACCAGAACCACCGAAGCGGGCGGCTCGGTGCAGTGCGGCTGGTGTCTCGCCAGAGCGCCCGGCCGTCCGGGCAGTGGGGGCAGAGCGGCGGCTGGTCCACGGCGTCCTCCTGGAGCAGTTTCGAGTC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //