Array 1 170213-170660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJC01000004.1 Pectobacterium brasiliense strain Y52 Y52.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170213 28 100.0 32 ............................ ACTCAGAGCATAGATGGGGTCTGACTTCTATC 170273 28 100.0 32 ............................ AACTGGTTCAACTTTGATGCCGACATTAAGGA 170333 28 100.0 32 ............................ TTATCCTTTGCGTTGGCCAGTGCTGCTGTATT 170393 28 100.0 32 ............................ ATCTGGACGTTGCCGGACGGGTTACGTGCTTT 170453 28 100.0 32 ............................ GAAGACATGCCCGATCAGGTACGCGCCAAACT 170513 28 100.0 32 ............................ CATGCCCGAAACGCCTCAAACGACTTAACCGC 170573 28 89.3 32 .....T.......C...T.......... GAAATCGTCGCCGATATCTTCAGCACCGGAAT 170633 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCACAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCTTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCAGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 177405-177016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJC01000004.1 Pectobacterium brasiliense strain Y52 Y52.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177404 28 100.0 32 ............................ ATCTCAGGTTTATCTTCGACTACTGGGTAATC 177344 28 100.0 32 ............................ CCTGACGATTTTAATGTCAGCACCGTAAGTGG 177284 28 92.9 32 ...........C...T............ TCGTATAATCACACCGATCAGTATCGGCTTTG 177224 28 92.9 33 ........T..C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 177163 28 92.9 32 ...........T.C.............. GTCAGCAATGCTGAAAAAGAACGTTTAGCTAG 177103 28 96.4 32 ...........C................ TTCTGAGGTGTAATGTTCGATAAATAATTCAG 177043 28 75.0 0 ...........T.C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.9 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTACCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACTGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CAGTTTTAAGCGTCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGAGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTCCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCAT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 185978-186365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJC01000004.1 Pectobacterium brasiliense strain Y52 Y52.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185978 28 100.0 32 ............................ CCAAACCAACGACATCCTTACCGACATGTTGT 186038 28 100.0 32 ............................ ATTCTATCGCCGAGGCGGAATGGATTCCCCAA 186098 28 100.0 32 ............................ AGATTCGCGGCACGGACTTCGCGATCAAGCAG 186158 28 92.9 32 ...........T.C.............. CGACGCGTACAGCGACATAGAAACCAGAATCT 186218 28 100.0 32 ............................ TGACCAGCGTTTTTGCGCTTTCGGATCCCCAA 186278 28 92.9 32 ...........T.C.............. TCGACTGGTGAGATCGAGGTTCGTTTGTTCTT 186338 28 78.6 0 ...........TGC.........G.T.C | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGCAAAACCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGTTAACGGAAGCAGAAGCCGCAGCACGAATTCCCGATGCCGTAGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTATTTGTGGAACATGGCCCGTTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTATCGGGATGCGTCGCTGGTGCGACGCATTTTGGAAAACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTTCCGAGCAGACTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCACCCACATCGCCATCTCCCTGCTATCAGGCTTCGCGCGCCAGAATAGGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158315-161216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJC01000001.1 Pectobacterium brasiliense strain Y52 Y52.scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158315 29 100.0 32 ............................. TTCCGGGCCGAACGCCAAAGTATCCTGCACTT 158376 29 100.0 32 ............................. GTCGCTGTGGTACCGCGCATCGGCGTAATCGT 158437 29 100.0 32 ............................. GGTAGGCTCCCACGCGCGCAGCTCTGCCTGAG 158498 29 100.0 32 ............................. GTTGAACGTGTTAATGCCATCTCCACCGCCGT 158559 29 100.0 32 ............................. CCATCGGTTTTATGCTGCCAAATGATGAAACT 158620 29 100.0 32 ............................. CAATCGAATCAGCCGGTAAACCTGATGAGGAT 158681 29 100.0 32 ............................. TGCTGGAGTCTATGGCTAAAGCCGATCTCACT 158742 29 100.0 32 ............................. CCAGTTTTGAACAACATCCCCGACCAGCTTTG 158803 29 100.0 32 ............................. GACCGCATCATCCTCACGGATGACATTCCGGG 158864 29 100.0 32 ............................. GGTCAACCTCTGTTGTTTTTGTTGTGGTCTCA 158925 29 100.0 32 ............................. CCGAGTTCGACACATTCGCTGCCGGAGAGCCA 158986 29 100.0 32 ............................. CTGGTCGCCAGCGGCGGCATGCTTGAGTTTGA 159047 29 100.0 33 ............................. TGGATATAACGTCATCAGCGGCCCTCTTGATGA 159109 29 100.0 32 ............................. CTAGTTGGGGGTGTACCCGCCACCTCTGCGGG 159170 29 100.0 32 ............................. CTCAATCTGTCTCGAGACGGACTGAGCCTCGG 159231 29 100.0 32 ............................. AACAGAAGGATAATCTCGATCAGGTCGCCAGT 159292 29 100.0 32 ............................. AGACTTGACGATGAAGCTGTTAAGCGACTTAG 159353 29 100.0 32 ............................. CCGTTACCTGTCCAGAGGCAGGTCTGCTTGGT 159414 29 100.0 32 ............................. ATCGACACCTGCGGGGATTTTAATGGTTACCC 159475 29 100.0 32 ............................. ATTGATAGTTGGTGCCAGAGATACTGCCTAAC 159536 29 100.0 32 ............................. CGCCTAATAGACCACATCGCAGCCCTTGAGCA 159597 29 100.0 32 ............................. CCCTGCATGAAAACAGACCGTAACTCGATAAC 159658 29 100.0 32 ............................. ACCACTGCATCACTTCGGTTCGGCTGATAGTC 159719 29 96.6 32 A............................ ATTCTCGCGTCTTTACGAGGCTGACGCTGTAC 159780 29 100.0 32 ............................. ATGCTTATTGCGCGCTTTGCTTGCGCTGTGGC 159841 29 100.0 33 ............................. GCTTCTGCTGGAGAGTACGAGACATAACCGTCC 159903 29 100.0 33 ............................. CAGTGGTGCGAGATTGTCCAGAACAGCATGTAC 159965 29 100.0 32 ............................. CCAGACGGGTACACAGATGTTATTTATTATTG 160026 29 100.0 32 ............................. TTTAAGTTCAAAGCCCGTCATAAGCCCTCATG 160087 29 100.0 32 ............................. TAGTCGCGGAAGTAAAACGGCTAAAAAGTGAC 160148 29 100.0 32 ............................. ACAGCTAACAGCCGTGTTATGTGCATGTTTGA 160209 29 96.6 32 ........T.................... TAATCAAAGAGACGCCGGGCAGTCGGGGAAAG 160270 29 96.6 32 .............G............... CGGGATGCATGGGGCGCTCAGATTGGTGCGCT 160331 29 89.7 32 .A...........G..............C AATCCGGGTATAAACACATCACCAACCCCTAC 160392 29 89.7 32 .....G..T.T.................. GGCGCGTAGCGGCTCCGCTTCCCTTGTCAGCA 160453 29 100.0 32 ............................. ACGCCTTGAAGATTGAGAGCGCATTACTGAAC 160514 29 96.6 33 A............................ GACGGCACGGTCACGTCAACGTGGCATGAATAC 160576 29 100.0 32 ............................. CAGGAGGCATTAGGTTCATGGACAGCTGGGTT 160637 29 96.6 32 ..........................T.. ACAGCTAACAGCCGTGTTATGTGCATGTTTGA 160698 29 96.6 32 ........T.................... GGGGGAGATCGGGGCAGGGTGTGGGGGAAGGG 160759 29 96.6 32 .............G............... ATAGGAATTGCCGTATTCATTTATATCGATTC 160820 29 96.6 33 A............................ ACAGGGGTAAAACAAATAAAGACATATTCTGAA 160882 29 96.6 33 ............T................ TTCGTCGCGCGCGAGCTGCTGCGCGGTCGCTGC 160944 29 86.2 32 .A..........TG..............A AATCCGGGTATAAACACATCACCAACCCCTAT 161005 29 89.7 32 ........TA..G................ AAAATGCGATAGCTGCATCCCGTGAGTTGGAA 161066 29 89.7 32 ...........A.T.T............. CGTCTTTGCGTGTTTTTTCTCGTTCCATTCGT 161127 29 93.1 32 ........TA................... TTCGCGAACTGGGTCGCGTACAAAATGACGTC 161188 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGTGGCCACCGGGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTTACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAAGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //