Array 1 66315-67592 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POKL01000027.1 Streptococcus suis strain 1380 SS_1380_Contig27, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     66315	    32	 100.0	    33	................................	TACCAACAATAGCAATCTTTTCATTATCATTGA   	
     66380	    32	 100.0	    34	................................	ACTTTTTAAATAACTTGTCTGCAAGTCTAAATGT  	
     66446	    32	 100.0	    34	................................	CGCTTGATATTTGTATAATTCAACGACTAAATTA  	
     66512	    32	 100.0	    34	................................	CAAACTATCCAGCAGTAGAGCCAGCTGGTGATGA  	
     66578	    32	 100.0	    34	................................	TAAGCTATACATGGAAGAATTGATACATGAGGAC  	
     66644	    32	 100.0	    36	................................	ATTGTCACTGTTTGAAAATATCCATTTCTGGTACAC	
     66712	    32	 100.0	    35	................................	AAGTGTCCTAACCGCTTGCTTCCAGATTGGAAGTA 	
     66779	    32	 100.0	    33	................................	TATCTGGATAGGTGAAAACCTTGTCAACGGTTG   	
     66844	    32	 100.0	    35	................................	AAGTTCAAAGCCCAAGAATTTTTCCAGTTGTTCAA 	
     66911	    32	 100.0	    34	................................	TCCTTTGATTAAGCTAAAATTGTGATGTTGTCTT  	
     66977	    32	 100.0	    35	................................	AGTTGCATTGGAACACGGTTCGGGGGTGTAGTGAA 	
     67044	    32	 100.0	    35	................................	ATTATCGCTGGCATCTTCGAAGGATACCACATCCC 	
     67111	    32	 100.0	    35	................................	AGATTTGATACCAGCTTTATCGCGCATCTTGGCAT 	
     67178	    32	 100.0	    35	................................	TCCGCCAAAGACTCTACCTAAACCGTCTCCAAGAA 	
     67245	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA  	
     67311	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC   	
     67376	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC  	
     67442	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG             	Deletion [67497]
     67497	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG    	
     67561	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        20	    32	  97.2	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 9.09
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-18] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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