Array 1 554974-555794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065060.1 Streptococcus equi subsp. zooepidemicus strain SEZ28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 554974 26 100.0 41 .......................... AGTGCTAATGTCACTGTCTGTCAACTTGGTAACATGTCTCG 555041 26 100.0 39 .......................... GTTGTGGTATTGGTCTGATAACCATTTCCCCAAGTCTCG 555106 26 100.0 40 .......................... TTTTCAAATTGGTTAAAGTCTTACCCTCAAAATTGTCTCG 555172 26 100.0 40 .......................... AATGGGTGTTTTTTATCGTTAAGAGATAAATGCTGTCTCG 555238 26 100.0 39 .......................... TTTTCAGCCTCAGCCTTAGCTTGTACAGCTTGAGTCTCG 555303 26 100.0 39 .......................... ATAATTTATCTTTGATATTGTACAATATATTGTGTCTCG 555368 26 100.0 40 .......................... AAAAATTTATTGATAAAATACTGCTGACCCTTACGTCTCG 555434 26 100.0 40 .......................... TACGATTATCATTTAAATACTAAAAAAACTACAGGTCTCG 555500 26 96.2 42 A......................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAGGTCTCG 555568 26 100.0 41 .......................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG 555635 26 88.5 41 ...TT.G................... TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG 555702 26 88.5 41 ...TT.G................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 555769 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================== ================== 13 26 97.1 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGCCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1406441-1405151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065060.1 Streptococcus equi subsp. zooepidemicus strain SEZ28 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1406440 36 100.0 30 .................................... CTTGAGAAAGCTGGATACATCAGAAGTTAT 1406374 36 100.0 30 .................................... TTACAGGAGTAACAACTGTATTTTTGCTGT 1406308 36 100.0 30 .................................... CACCGAGCTTAGCCCCAAATGCCCCATTGA 1406242 36 100.0 30 .................................... TTGATAAATGTGAGAATGACTTTGAAGCTA 1406176 36 100.0 30 .................................... TGCCTCTCCATGTCTATGACGAGTTCTCCT 1406110 36 100.0 30 .................................... AACCTCTATCAATTAAGTCACTTGATACAA 1406044 36 100.0 30 .................................... TGTATCTTTTAAAAGCAGTCGCTCCCCTGT 1405978 36 100.0 30 .................................... TATCGGTATTGCTTATAATTGGAGGAAGTA 1405912 36 100.0 30 .................................... TATCAACAGGTGTTTCTTCAATAACCTTTA 1405846 36 100.0 30 .................................... TAATCAACGTGAGAACTGGCAATTAGCCCA 1405780 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 1405714 36 100.0 30 .................................... TAACATATTATCAAATTAAAAGTGCAAATT 1405648 36 100.0 30 .................................... CCTGCAAGCTGAGATTAAGCTGGCAGCCCA 1405582 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1405516 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 1405450 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1405384 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 1405318 36 100.0 30 .................................... TATCAAAAATAGTTTGTAAATTATCAATAT 1405252 36 97.2 30 ..................T................. ATGGCCGCATGCACTATACATTTACCGCAA 1405186 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.2 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //