Array 1 759-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMY01000002.1 Salmonella enterica strain BCW_1593 NODE_2_length_362407_cov_3.60608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 758 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 697 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 636 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 575 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 514 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 392 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 331 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 270 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 209 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 148 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 87 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : A # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107848-106371 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMY01000014.1 Salmonella enterica strain BCW_1593 NODE_14_length_124902_cov_3.61208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107847 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107786 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107724 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107663 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107602 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107541 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107480 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107419 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107358 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107297 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107236 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107175 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107114 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107052 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106949 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106888 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106827 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106766 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106705 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106644 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106583 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106522 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106461 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106400 29 96.6 0 A............................ | A [106373] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124863-123980 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMY01000014.1 Salmonella enterica strain BCW_1593 NODE_14_length_124902_cov_3.61208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124862 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124801 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124740 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124679 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124618 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124557 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124495 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124434 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124373 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124312 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124251 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124190 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124129 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124068 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124007 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //