Array 1 737392-737599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 737392 28 100.0 32 ............................ GATTTAAAAACTCGATAATTATCTGTATTAAC 737452 28 100.0 32 ............................ GATGAATACTATCAATTAGCAAGTAATTTCAT 737512 28 100.0 32 ............................ TGAGTCCTCGATTACTGCATAGGCTCCGATTA 737572 28 78.6 0 .......A...A.C......TGA..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGCGAACTGCATGTTTCCATATTGGTGGGCATAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCGCAATTCGGGACCTCATCCTCATAGCCCAGCGCAGAGCAAAATCGCGCCCCAACAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCGCTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCTGACGGGCAGCAGTTAAGTATCTGTCTGGGAGAGGGTGACGAACGGATCATTGTGGAGTGATGGGGGGAGATCAGACGGGATGGAGAATAGAGCCTGTCGCGTACTGCTTCTCACCCCCTTTTTTAACGCACAGTCGTAATTTACTGATTTATAATCACCTTTTTCCGCAGCCATAAAAAAGGGTTTTTCTGAGAAAACAGGATATTCTCTTTAATAATCTGGTGGTTAGCATAAAATTCTTACG # Right flank : AATAAAACTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACACGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACCGTCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAACGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGTCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCTGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 753523-754632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 753523 28 100.0 32 ............................ AGACTGATTTTTTCCGGCAGTTGAGTGTTACC 753583 28 100.0 33 ............................ AATAGCACCCCGCCACCAACTTAATTTATTGAT 753644 28 100.0 32 ............................ AGACTGATTTTTTCCGGCAGTTGAGTGTTACC 753704 28 100.0 33 ............................ AATAGCACCCCGCCACCAACTTAATTTATTGAT 753765 28 100.0 32 ............................ AACAACAACGAGCGAACCGCGTAAAACCTGTT 753825 28 100.0 32 ............................ CCAATCGCGCCAATACCAACGGCAATTAGAAC 753885 28 100.0 32 ............................ TGCAAATTTTCAAGCGCAAGCATTAGCGAACC 753945 28 100.0 32 ............................ GCATAGATATTGTCGATTTGGTTATTGCCGGG 754005 28 100.0 32 ............................ GCTACCGTCTGACAGTAAAGACACCGGGCAGA 754065 28 100.0 32 ............................ GCATCCTGACGCTATTTCATTTGCTCGCAATG 754125 28 100.0 32 ............................ CACCACCGGCAGGAGATCAACAGCTAGTCCAT 754185 28 100.0 32 ............................ GGGACAAGCAGTCCGTTCTCTGTAATCGTCAC 754245 28 100.0 32 ............................ ATGAACGCAATTTCATCGGCCTCTGTTCCGAC 754305 28 100.0 32 ............................ TGCTGCTTACCGTGCTGTGCTGACGACGCAAA 754365 28 100.0 32 ............................ AGTTCTGACATTCAGTGAATGACATAACGCGC 754425 28 100.0 32 ............................ AGTAGGGTGTTCGCGCTCTTCCTGCGTGACTC 754485 28 100.0 32 ............................ AGTAGGGTGTTCGCGCTCTTCCTGCGTGACTC 754545 28 100.0 32 ............................ AAGTTTTAGTTGATTGCAATAGATCCGCATCA 754605 28 85.7 0 ....................T....TGC | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGATTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGACGTTATCCATAATGTATTTTCTGCCGCTATAGATAATAGGCGCTGATGTCAGCGAAATTAATCGCTGGCTAACTATTTAATAAATAAAAATATAATTTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTAGGAAAATGATGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CTTATCGAAATAAATCACTGGCGCAGCATATTGTGGCGTTATTCCCCATTCAGCGTGACAATCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATGTTTAGGCATCCGTTGGTGATGGGGATCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCAGGCATGTCGTCACTGCCTTCATACGTATGGCGGTAATATGGTTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCTGAGGTATGTTTGATGAACACATGCATCAGCCCGACTTTTATCTGGCGCAGCGCAGTAACCTGCACCAGTATTTCGTCAGTTACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGTCGTATTCCCGCTATCGGGCTTCTCGTGCCAAAATTGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2215995-2216694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2215995 29 100.0 32 ............................. TATGACAAATCCAAGTCCAAAGGCGTGGATTC 2216056 29 96.6 32 A............................ AAATAATGCTGTCTACGGATTTTTGGTGTGGA 2216117 29 100.0 32 ............................. AAATACCATTCTTCGGTGGTGGTGCGTACAGT 2216178 29 100.0 32 ............................. GGGAGACGGGCTATACTCCGGAAGGGAGATCA 2216239 29 100.0 32 ............................. ATTAGCCGGGTCAGCTAATTCCGTAATTGGGA 2216300 29 100.0 32 ............................. AACGCTGACGACACGCTGCTGGAAATCATCAA 2216361 29 100.0 32 ............................. TACAATCTGGCGGCGCAATAAAAAGCGACTTG 2216422 29 100.0 32 ............................. TGACTGACGGGTAGTAATTCTGCTTTACGTAT 2216483 29 100.0 32 ............................. AAGATCAGTTAGCTGACGCTATGGATGACCAA 2216544 29 100.0 32 ............................. TGCTCGGATACGTGTTCTGGTACTCCGTAATC 2216605 29 100.0 32 ............................. AAGTTGCAGCTAATCGGCATTCTGCCGAATAT 2216666 29 82.8 0 ............T........G....TAA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGCTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACAATGCACAGCCACCTGCAATCCCTGAGCCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGTATGCTGGTTGTTGTAACGGAAAATGTTCCACCACGCCTACGCGGCAGGCTAGCGGTATGGTTGCTGGAGGTTCGCGCGGGCGTGTATGTGGGTGACACCTCGCAGCGAGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTAGTGATGGCATGGGCGACCAATACGGAGTCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGACGGACTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTCTTCTTCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : ATTGAGGGCTGGAACAGCTAAAGGATTAGCTGTTCTGGCTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCTTTGAGTCTGGGGATTCAAGCTGGGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACCTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGTCTGTAAGCTGACGTCTTGATCAATGTGAATGCTAACCACTTTATGAGGAATAGATACGTCATCCTCTGCGCTACGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCGTTTTCAATAAGTTTCTGATATAACTCATATGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAATATTTTCTTTTGATGGGTGAAAATCAGTTGTGGTGTCAAGAAGGACGCGTTTTCCTTCTCAATATGTCGTTGTTGTCCTGCGTTTGACTTCAAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2218689-2219268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2218689 29 100.0 32 ............................. CGCTTGTCGACAGCTTCTCTGTTGTCGACAGG 2218750 29 100.0 32 ............................. TGGAGTCCTCGTCGTGGAAGACTATCGTAATT 2218811 29 100.0 32 ............................. CAATACTCCTAAACCCAAAGGTGCATTGCAGG 2218872 29 100.0 32 ............................. ATGCACGCGGCGGCGGCGCATTTAAGAACCTG 2218933 29 100.0 32 ............................. CCAGTAATCGTGGGAGAAAAAGACGTGCAACT 2218994 29 100.0 32 ............................. GACTTCCAGCAGACGGACGGGACGTGGAATAA 2219055 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 2219117 29 86.2 32 .......AT...TT............... TATCTCAAGACTGGCGCGTTCTTCGCTCAGAA 2219178 29 93.1 32 ..A....T..................... TTTGTGACCGTGCAGGGTCACTCGATGGCTAT 2219239 29 82.8 0 ..A.........T........CC.....C | T [2219265] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCGCAGTCTTCAATGAACGTATTAAAGCGCTCCCTGCTGGCATCGCTTTACTGCGTGTACTTATGGATCAGCATGAGCTAACGCAGAGTGATTTTGAAACTGAGATCGGTAAAAAGTCTCTGGTATCTCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCCAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTCTTGCCAAGCACAGCATGATGCGCCATGTAATAAAGACTGCCTTGCTGGACGGTTATCTGAATAATCCCTGCGTTATCAGGGATTACGTTATGACTGAGATGCATTGTAAGAAATCATAGAAAGGAATACCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTGTTATAAAACAGCTCTCTACTTTTAGA # Right flank : CGTTTCTGGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATACCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAACCAGCAGGTGATGGCGAAGCGTTCCACAGAACATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCCGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGCCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAAGGCTCCGCGCTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGTAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATTAATGTTTTCGACACCATCCAGCAAGGTGCTGCGGGTGCATCATCCCGTAGCGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //