Array 1 1803378-1801080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028287.1 Acidovorax avenae subsp. avenae strain AA78_5 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1803377 31 100.0 34 ............................... TTCGCCTCTGCGCCTCTGCCATCACGAGGTGCAG T [1803368] 1803311 31 100.0 36 ............................... TACACGGTGCACCTGCAGGACGCGACGCCCGAGGAT T [1803302] 1803243 31 100.0 35 ............................... ACACCCTCTGCAGCCTGGGTGTTCGCAATCAGCTC T [1803234] 1803176 31 100.0 34 ............................... TTCGGAGAGCGTGCCGGCAGCCCAGGTGTCCAGC T [1803167] 1803110 31 96.8 34 ..........................A.... CGCGACCAGTGCGCGGCAAGTGCGCAGGCCTACG T [1803101] 1803044 31 100.0 35 ............................... AGGCGTCCGCCCTTCGCGGCCTTCGCTGTCGTGGC T [1803035] 1802977 31 100.0 35 ............................... AGTATGTCGTCGTTGGCACTGATGATCCAAAGATC T [1802968] 1802910 31 100.0 36 ............................... ATACATGGCCGACACCGCCGCGGCCGGCCAGGGGCC T [1802901] 1802842 31 100.0 33 ............................... GCGAGGCCTGGCGCACTGTTGCCGAGGCCGATG T [1802833] 1802777 31 100.0 33 ............................... GGCAGCACGGGGGCGTGACCATGGCCGAGAAAA T [1802768] 1802712 31 100.0 36 ............................... TCCGGCTGCTTAGACGCCGGCTACCTGCAGCTTCTG T [1802703] 1802644 31 100.0 34 ............................... TCCCGGCATTCGGCGGCGCACCTTCCGGGGTCGT T [1802635] 1802578 31 100.0 34 ............................... TCCCGGCATTCGGCGGCGCACCTTCCGAGGTCGT T [1802569] 1802512 31 100.0 35 ............................... TCGCTGACCCTCGTGGCCTACGGCGAAGACGACGA T [1802503] 1802445 31 100.0 35 ............................... GTCAACTGCTGGCGGTGGTCCAGGCCGTTCAGACC T [1802436] 1802378 31 100.0 35 ............................... ACCGGCTGACCATGCACATCCTCGTTTGCAACGTC T [1802369] 1802311 31 100.0 34 ............................... ACGGTCGGTGAGGGGCGCCCTCCGCGCCACAGCA T [1802302] 1802245 31 100.0 34 ............................... GCCGCCGCAGTGGTCCTGCACAGCATCCGCCGCG T [1802236] 1802179 31 100.0 34 ............................... AACAGGCTGTAGCGGCGCACATCGCCGTCCGTCA T [1802170] 1802113 31 100.0 34 ............................... CGCCTGTGGGGCAATCGCACGTGTGCTGATGATG T [1802104] 1802047 31 100.0 35 ............................... ACGGGCGCCACGATCACGGCCGCAACAAAGGCGAC T [1802038] 1801980 31 100.0 35 ............................... CAGATCGTCGCGGACGAGTGCGACCTGAGCCTGGC T [1801971] 1801913 31 100.0 37 ............................... TGCTCCGAAGAGCTGAAGCACGTGCCGATCTTGGAGC T [1801904] 1801844 31 100.0 34 ............................... AGGGTCTGCGCAGCATGATCTTTGACCTCTACGA T [1801835] 1801778 31 100.0 34 ............................... AGGCCCTCGATGTAGGCCACGACCTCACGGCCAC T [1801769] 1801712 31 100.0 35 ............................... AGCCCGTGGATAAGCCGTCTGATCAGCCGGATGAT T [1801703] 1801645 31 100.0 34 ............................... GGTCGTGCCGTCCCCGCAGGGTCTGCATCGCCTG T [1801636] 1801579 31 100.0 37 ............................... CCGATTGGATGTCCCAGGGCCTTGCGGCCATCTGGAG T [1801570] 1801510 31 100.0 36 ............................... GACGCCTTCCGCGCGCTGCGCGATGCGGTGATGGCC C [1801504] 1801442 31 96.8 34 .......................G....... AAGCCTCGGGTGTATGCAGCAACGGTTGACGGTT C [1801436] 1801376 31 93.5 36 .........C.............G....... ACGGACCGGTTCCTGTCGTCCAAGATGCACGTCATC 1801309 31 93.5 34 .......................G...G... TCGCGGATGCCCTTGCCTGGCGTTGCGCGCGACT C [1801303] 1801243 31 90.3 34 T....A.................G....... ATCAACATCGAGTTGCTCAAGCAGTTGGCCGCCG C [1801237] 1801177 31 90.3 35 ...................TC..G....... ATGGCCAGCGGCAAGACCACGCCGCCCCAGCACCT T [1801168] 1801110 31 83.9 0 ..A..A.....A........C........G. | ========== ====== ====== ====== =============================== ===================================== ================== 35 31 98.4 35 GTCGCGCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGGCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGTGATTACCAGCCGAAGACGCCGGCACCCTGAGGGCGGGCCCTTCCGCTCCCTCCCTTTCCTTTCTTCTTTCTTTTGCCGGGCGTTGCGAACCGGGAGTGACCGACTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGCAAAGGGAATTTTTCCTGGGTGGGGGGGGCGGGAAGCGCGAGCGGCGGGTCGATTGGGACGGGTTCGCGGATGTATGGGGAAAATGGCTGGGGTGGCGCGGGTTTATAAAGGTGCC # Right flank : AACGAGGGGCATAGCGGCAAGATGTTCGTCGTCGATCCACGCCCGGGCGAGCATGGAATGCAGTCAACGCCTCGACCGGCCCTGCCATATCACGCGGCATCGTTGCACATGCACAGGCGCTCTCACATCAAAGGCCGATTGACATCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGCCTCCACGTCGATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGACCGGGCGGAACCCCAGCCTCGCGTAGGCGGGCGCGCTCCAGGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCCACCAGGCCCTGCGCCTCGGCATGCGCCTGCGCGGCCTGGATGAGCATCGTGCCGATGCCCCTGCGCTGCCATTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGTCCGAAGGCCTCGGCGTCCAGAAAGCCGACCAGGTGGCCGGGCGCTGCCTCGGCCACCCAGGCCGCGCCCCGCAGGATGAG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4499653-4501081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028287.1 Acidovorax avenae subsp. avenae strain AA78_5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================================================== ================== 4499653 32 75.0 34 A.TC.ATTG.A..................... AGCCCATACAGCCGACGCAACGCAGGTTTGCCAG 4499719 32 100.0 35 ................................ CCCACGATGGGGAGCGCGCAGAACAGCTTGCCGAT 4499786 32 100.0 34 ................................ GTGCGAGTGGCAACGATGTTGCCCAGGTTGACGG 4499852 32 100.0 36 ................................ CCGTGCCGAGCGCACCGAAGCCGCCTCCACCGTGGT 4499920 32 100.0 35 ................................ CAATTCCCAGGTTCTGGCTGGTCAGCAAAACAGCC 4499987 32 100.0 35 ................................ AATAGCAATTGGATTCTAGGCCCCGGATAGAGTAG 4500054 32 100.0 34 ................................ AACATGCCGCAAGGTTAGCGCGGCTTCCAGCTAA 4500120 32 100.0 35 ................................ TAATTTGCCCCGCAACCTAGAAAACAGGAGTAGAA 4500187 32 100.0 35 ................................ TTTACGGAGGTCGTCGGGCAGTGGCTGTGCGTGGC 4500254 32 100.0 35 ................................ CACGTCGCAGTGAGCCAATCGACCTTCGCGCGCTG 4500321 32 100.0 34 ................................ GACTGGGTGGCCGGGCAACACCCCATCAGCATCG 4500387 32 100.0 34 ................................ GGGGCCGGATCGCTACCCCTGGGGTGTCTCGCGG 4500453 32 100.0 35 ................................ AACGACACGTACCGGACGATGATCGACCGGCAGAC 4500520 32 100.0 37 ................................ ATTGCCTTCCAGCGTGCCATCGCCTTGCACGCCGTCG 4500589 32 100.0 35 ................................ GACTTGGCCAAGAAGCGGACGACGACGCTCCTATC 4500656 32 100.0 35 ................................ CTCGACACCTTCGCGCGCTACATCGAATCGGGGTT 4500723 32 96.9 36 .............................G.. ACGAACTGGAGCAACTGGGGCTAGGATGCCGTGCTC 4500791 32 93.8 33 ............T..............T.... CAGAGCGCGAACAGCACCAACACGAAGCCCACG 4500856 31 78.1 36 AA.T......-.C....T......A....... AACGGCAACCAGCGCTGCGGCATGATCGCTCAGGAT 4500923 32 87.5 95 .......G.............C..A......A ATTTGCGGGACCTTTAATGCAAGATTCGCGTCGGAGTCGCGCCCCGCATGGGTTGAAACCCGTAGGTGTCCGGGTAACGCTTGAAGTGCCAGACC 4501050 32 75.0 0 A.......G.AA..A......C..A......T | ========== ====== ====== ====== ================================ =============================================================================================== ================== 21 32 95.5 38 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GCAGACCATGCCGCTCCAACTGCTCAAGCCCTGCGTCGCCACCATCGACGAGCTGGCGCGCAACTACCGCACCAGCGTCGTGCTCTGCACAGCGACGCAGCCCGTGCTGGAGGCGCCCGCGTTCGACGGCGGGCTGACGGGCGTGCGCGAACTGGCGCCCGAGCCCACGCGGCTGTTCCAGCAACTGGAGCGGGTGCGCGTGCGCCACGTGGGCACGCTGGACGATGCGGCCCTGGCCGGCCACATGCGGGCGCGAGAGCAGGTGCTGTGCATCGTCAACAACCGCCGCCATGCCCGGGCCGTGTACGAGGCCATGGCCGACCTGCCCGGCGCGCGGCACCTGACCACGCTGATGTGCGCGAAGCACCGCAGCGAGGTGCTGGACGAAGTGCGGCAGATGCTGAAGGCCGGGCAGCCCTGCCGCGTCGTCAGCACCAGCCTTATCGAGGCCGGCGTCGATGTGGACTTCCCCACGGTGCTGCGCGCCGAGGCCGGCCTGG # Right flank : TTTCTACCTGCAGCAGCAGAGCTTCGGCGGTAAGGTGCCGCGCTCCGCTTCGGCACTTGGGTGCATGGATCTGGAAACCGCACTGGAGCCCCGCGCGCCCTCCTGTCGCCCCAGTCCGACATCCCCCCAGCCCTCCTCCGCTGACACTGCCCCCATGCCACTGCACCGTCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCATCGCCCGGGCCAGCGGGAGCGGCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGACTCCGCCAACCCCCTCGCCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTAGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCAAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGGCGCCGCAATGGGGAGCCGCTGGGGGCCGCGCGCACCGCGGCGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //