Array 1 39314-38187 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNH01000013.1 Escherichia coli strain MOD1-EC6470 MOD1-EC6470_13_length_128231_cov_24.1284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39313 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39252 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39191 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39130 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39069 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39008 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 38947 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 38886 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 38825 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 38764 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 38703 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38642 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38581 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38520 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38459 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38398 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38337 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38276 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38215 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66139-65012 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNH01000013.1 Escherichia coli strain MOD1-EC6470 MOD1-EC6470_13_length_128231_cov_24.1284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66138 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 66077 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 66016 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 65955 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 65894 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 65833 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 65772 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 65711 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 65650 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65589 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65528 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65467 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 65406 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65345 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65284 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65223 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 65162 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 65101 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65040 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //