Array 1 1729-1492 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SDKO01000121.1 Neisseria meningitidis strain N101_10 NODE_121_length_1896_cov_19.9827_ID_241, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                            	Insertion/Deletion
==========	======	======	======	=============================	===========================================	==================
      1728	    29	 100.0	    39	.............................	CCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGACC    	
      1660	    29	  96.6	    39	.........................T...	CCTTAGAACAACAGTAATATTCAAAGATTATAAAAGACC    	
      1592	    29	  96.6	    43	.........................T...	ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC	
      1520	    29	 100.0	     0	.............................	|                                          	
==========	======	======	======	=============================	===========================================	==================
         4	    29	  98.3	    41	CGTCATTCCCGCGCAGGCGGGAATCCAGA	                                           	       

# Left flank :   GAGTCAGCTCCTCGTATCGGCAGTCGGTCGGAATAGAACGTAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCTGTGCCGACAGACCTAGATTCCCACTTTCGTGGGAATGACGGGATGTAGGTTCGCGGGAATGACGCGGTGCAGGTTTCCGTATGGATGGAT
# Right flank :  CTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTCCAACCAGCAATTCGGCGGGCGCGGGATCGGGCGGTTTGCCGAATCCCGCCGTTTGCGGCGCGCCTGCCGCCGACGGTATCCCGCGAAGCAAGATTTAAGGGATAAAATATGTTCCAACACGCAGGGCGGCACATAAGGCGCCGCCCTGATTCGGAAGGGCTTGCACCCCTCCCGGACAAAGCCTGATCCTGCCGCCCCGAAGGACGGATGCCCGAAGGGCGGGGGGTTTGACCGAAAAGGAAATACGATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGGGGGGGGGGGGGGGGGCGATGGCGCAAACCTATAAATACGCTATTATCATGAACGAGGGAAACCAGCTCGAGGTAAAGGGGAATGGGCAATAT

# Questionable array : NO	 Score: 2.57
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CGTCATTCCCGCGCAGGCGGGAATCCAGA
# Alternate repeat :   CGTCATTCCCGCGCAGGCGGGAATCTAGA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-11.30,-12.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.74   Confidence: HIGH] 

# Array family : NA
//


Array 1 23276-23123 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SDKO01000034.1 Neisseria meningitidis strain N101_10 NODE_34_length_23275_cov_22.5912_ID_67, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     23275	    21	  58.3	    30	---------------.....................	CATGGCGGTCGTCATATGGGGGTTCCTTCG	
     23224	    36	 100.0	    30	....................................	TGGATAGGCGTTCCGCAGCATCAGCAAGCC	
     23158	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         3	    36	  86.1	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   |
# Right flank :  ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 4.66
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//