Array 1 22679-24099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAML010000016.1 Neisseria meningitidis strain 30002 NODE_16_length_40860_cov_37.242116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22679 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22745 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22811 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22877 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22943 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23009 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23075 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23141 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23207 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23273 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23339 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23405 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23471 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23537 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23603 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23668 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23734 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23800 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23866 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23932 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23998 36 100.0 30 .................................... AAACACACCAAAGCATCTAAAGCCAAGGCC 24064 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //