Array 1 108987-108225 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAE01000088.1 Escherichia coli P0302293.8 gecP03022938.contig.87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108986 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108925 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108864 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108803 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108742 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108681 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108620 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 108559 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 108498 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 108436 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108375 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108314 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 108253 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125981-124488 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAE01000088.1 Escherichia coli P0302293.8 gecP03022938.contig.87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125980 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125919 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125858 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125797 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125736 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 125675 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125614 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 125553 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 125492 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 125431 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 125370 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 125309 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 125248 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 125187 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 125126 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 125065 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 125004 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124943 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124882 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124821 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124760 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 124699 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 124638 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 124577 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 124516 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //