Array 1 1990460-1988872 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134310.1 Actinobacillus equuli strain NCTC8529 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1990459 28 100.0 32 ............................ TTTATTGCCCAAGATGAAGAAAGGTGTAATGA 1990399 28 100.0 32 ............................ TATCCGCATTTAAGATTGATGTTGGTCTTCAA 1990339 28 100.0 32 ............................ ACCCGAACCACTTGCAGCAGAACCATTACTTC 1990279 28 100.0 32 ............................ TTTAGGTGATTATCCTCAAAGTGACAACTGGC 1990219 28 100.0 32 ............................ TGACAACGCATTTTCCGCTTTAGCGGTGATCG 1990159 28 100.0 32 ............................ ACCGAAAACGCCCAAGCTAAATATGGTAATAG 1990099 28 100.0 32 ............................ TGTCATGCCAAGCAACTGAGCGACAAAAGCCT 1990039 28 100.0 32 ............................ TTGTACGCCTAAAGGTATTATGACAATTTTTG 1989979 28 100.0 32 ............................ TTTTTACAAAATATTCTAGGATATTGAAGAAA 1989919 28 100.0 32 ............................ ATTTCCACGATTTCTTAACTTGTCCACCCATA 1989859 28 100.0 32 ............................ TTACCAATATTTTGCTGAAATGAAATCTAAGC 1989799 28 100.0 32 ............................ CTGCAGAACAAAACAATAGTAATCTTTACAAA 1989739 28 100.0 32 ............................ AAGTGAAGGTGGGCGGAACGGTGGCAGTTGGC 1989679 28 100.0 32 ............................ TCCAAACTCAATGCTCTATCTAAAAATCTAAA 1989619 28 100.0 32 ............................ ACAGCGGAACCCTACGCACTCAAACGGTTTTT 1989559 28 100.0 32 ............................ GCATTTGAGAACGCGCTGGAAGCGCACTTAGA 1989499 28 100.0 32 ............................ TAAAAACGCATTCAGGCTATCTGCCTTGAACA 1989439 28 96.4 32 ...............A............ TTTTTTTGCCGTAACATTACCGCTACTATCCA 1989379 28 100.0 32 ............................ GCCTTCACGCCAGCCACACTTGCTGGTATTTT 1989319 28 100.0 32 ............................ ACCTTTAATGTGCAGCACACCGGTCATCGTGT 1989259 28 100.0 32 ............................ TTAGTTGCCAATGTCGCAAATTATTATGGTGC 1989199 28 100.0 32 ............................ TTGCACGTGCGCACCAATTTCGCCGACTTGGC 1989139 28 96.4 32 ...................A........ AGTGCTTATTTTGACTTGCAAGTGGGTGATAT 1989079 28 100.0 32 ............................ CATAGTGAGTTTGTGCCAAATGTCTGCGCTGC 1989019 28 100.0 32 ............................ ACTAAACGTACCACTAGCCGCAGATATATCAC 1988959 28 100.0 32 ............................ AGAGATTTAAGTTGCTCACACCCGACAAATGA 1988899 28 82.1 0 .......A.........T.......TCC | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.1 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAACACAATTAATTGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTGCCGGAAGAAATAGTGGAATACTACCGTTACCAAAGGGTACATAGAAAAGGCCAAAGTGCTATTCGCCGTACAGAGAAATTTTTAACTCAACAAGGGAAATGGACTGAAGATGTTCGCAAAGAGATGCTAATACATCAACAGAATCAAAAAACATTTCCCCATGTAAAACTCAAGAGCAGTAGTACTAAGCAGCATTTTGTATTGGCAATACGACAATTTCGTTTAGCAGAACCCGCTTCCGGCTTATTTAACGCATATGGATTAAGCCAAGTAGCAACCGTTCCGCATTTCTAACCCATTTTATAACCCTTTTTTCAAGAGAATTCATTTTTCTTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : ACAAAATAAGAGGAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAAACGATTTTACATTCTAAACGGGCGAATATTTATTACTTAGAACATTGCCGAATATTATTAAACGGCGGGCGTGTCGAGTATGTTACCGATAAAGGTAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTGTCAAAAGCAGGGGTTATGGTTGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAACAGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCAGCAAAAACTTTGCAATTAGCACGGTTACAATTACTACTTCGAACTTGGAACAAGTTCGATTGGGAATATGCTCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //