Array 1 1135-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000006.1 Thermotoga sp. EMP Contig06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1134 30 93.3 36 ............T.......G......... GGGCGATGTAATTCCCTCGATGCTTCGAAAGTACGA 1068 30 100.0 37 .............................. TTGGTTGTATTCACAGATTTTGGTAGGATATATGCTA 1001 30 100.0 37 .............................. CATGCGACCCATCCAGCGATGGCCGGCGATTGGCTGG 934 30 100.0 36 .............................. TAGAGATGATGTGGTACAGAAGGCAAGTCAGGGTGT 868 30 100.0 37 .............................. GAGAATTTCTTGAAGATGTAGATATCGTTGAGGGGTA 801 30 100.0 37 .............................. CTTCCAAATCTCCAAACTGTATCGAAATTCCACGGAT 734 30 100.0 36 .............................. AGTTAGAGACCAAGAAGTGGTAAAAGCTTCTAACGG 668 30 100.0 38 .............................. GACAATGTGGCACGAAACTCGGTTGCCTCGTGTACAAA 600 30 100.0 36 .............................. TTTACCCATCCTTCAGGTAATTTTTCTGCTATATCC 534 30 100.0 35 .............................. CCCGTCTTCGATCCACACATCATGCCACAGCCCCT 469 30 100.0 34 .............................. TAAGCCTGGAAGCTTGCTCCTTGGAAAGATCTGT 405 30 100.0 42 .............................. TGGAAACAAGAGCCGCGTCAACTTCTCGGCTCCTGATTTGTA 333 30 100.0 38 .............................. CCGATACTGGGACGAGAATTTAGCACAGGTCAACCACG 265 30 100.0 35 .............................. GTAGAATTGTCCGAGCTTTGTAGTGCCCTGTAAGA 200 30 100.0 37 .............................. TTCCAGCCGGTTCAAACGATGTGCAATTCAACTACGC 133 30 100.0 37 .............................. GCGACGGAGGTGGAAAAATGAACTTCAAGAAGGTTGC 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 17 30 99.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCGGCATGTGAAGGCCCGGAGAGAACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACCCTTTTACCTGTCTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGCAGTCTCAGAAGGTGCTTCCTTATGTATTGAACGGGAATCGCTATAACGAGAACGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACGTTTATGAGATCGACGATCTCTTTCCTCCTTGCCCAGAGAACAACTTCTTCTCCGTTTTCATACAGCATCTGTGCAAAAACCGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCAAAAACAGAGTTCCTCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCATAAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CGAGAAGTTCCTTACATCCACGCAGGGATCAACCTCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 2 13302-14455 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000006.1 Thermotoga sp. EMP Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13302 30 80.0 32 A.....GC......G.....G..G...... CTTTTTGGAGAGCTCATCAACCGTCTGTGCGT 13364 30 96.7 35 ....................G......... TTCAAGGTTGATTTCATGGAAGGAAAGGTTTTTAT 13429 30 100.0 37 .............................. TTATAGGACTTTCGGGTGTTGGTTGTGTGCTTGCCTC 13496 30 100.0 37 .............................. TTGGAGGTGATACGATGCGTGGGATTTATGTACTTGT 13563 30 100.0 36 .............................. GGTTCCGTGGAAAGATCTTGTCGTCGGCATCTCGAA 13629 30 100.0 37 .............................. TTGAGCTTCTCGACTGTTTCTTTGACTCCTTCGATCT 13696 30 100.0 37 .............................. AAAAGTTCTGGAAGGGGCAGTTCTTTCAGAATATTTC 13763 30 100.0 36 .............................. CCTCTTCCATCCAGATGTAATTGAATTCCGCCGACT 13829 30 100.0 38 .............................. AAGGAATGATTGAAACAGTGAAAGGGCGGAGCACTCAC 13897 30 100.0 36 .............................. AGGTTTATAACGGCTGTGTGGTAAGAGGAATAAGCG 13963 30 100.0 37 .............................. CTCAGGGAGGAGGGATTAGCATGAGGAAGTTTTATGT 14030 30 96.7 36 ....................T......... TGACTTCTCTGGGATAGGAAAACGCCGGCCAAATGG 14096 30 96.7 36 ....................T......... CGGTGTAGATGACGTCAGCGATCTCAAGGTGGCTCT 14162 30 96.7 35 ....................T......... CTACAACTACGGCGTCACGGCTTATCTCATCGCCG 14227 30 96.7 37 ....................T......... TTTTTTGTTGGAAACCTACCATGTGAAAGTTATCACG 14294 30 96.7 36 ....................T......... CACTCGAGGACGGCGATGAGGTTCTCGTTTGCAGAC 14360 30 96.7 36 ....................T......... CGATTTCGACCATACGCTTGAAATCTTCCCTCAGCT 14426 30 96.7 0 ....................T......... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 97.4 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TATGTTTTCAAGAGAAAACAATCCCATCACTTTTTTGAGATCCAATCCCGTTCCGTACAGTCCGCGGAACAATTTGAGAGTTTCCCAAACAGTGAGGTTTTCAAAAAACGCGCTTTTCTGAAGACACACACCAATTTTTCTCTTCGTTTCTCTATCCAAGATTTCCTTTCTCTCACCAAAATAATAGATCTCCCCGGAGTCTTTCTTTCTGAGGCCTTCGAGTATCTCAACGGTCGTAGTTTTTCCCGCACCGTTGGGCCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCAACGGCCTTCACATCACCGTAGTGTTTTTTCAAATCAACGACTTTCAAAACCTCCAGAAAAATCCCTCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCACCCCGTGAAGGGGCACTTTTGTTTGTACGCTAAGGATGCATTGAAATTTGTTGAGCTCAGCGGAGATTATCGATACAAAACGA # Right flank : AAAAGCGGGGAGTAATAGACCCGCGCAAAGTCCGA # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 27615-29522 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000007.1 Thermotoga sp. EMP Contig07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 27615 30 93.3 35 A.......G..................... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 27680 30 96.7 36 ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 27746 30 96.7 37 ....................C......... GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 27813 30 96.7 38 ....................C......... GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA 27881 30 96.7 36 ....................C......... ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA 27947 30 96.7 36 ....................C......... TAAAGGATATGAGATACTCACTACTGAGAAATCATT 28013 30 96.7 38 ....................C......... GTGTATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 28081 30 96.7 35 ....................C......... AAGAACCCCGCAGACAAAGGAAACGTCACTCCCGA 28146 30 96.7 42 ....................C......... CTGGCGACATCCTACACGCTACAAGAAGATTCTCTTCTACGC 28218 30 96.7 43 ....................C......... CAGGCACGGTCGCGTACTGGACGAACTCGTTAGTGGACGAGAT 28291 30 96.7 38 ....................C......... GAATAATCTCTTGAATTTTCCATAATCGTCCCTCCCCT 28359 30 96.7 40 ....................C......... TGGAGGAGGGGACGACAAATTTCTACCAAAATCCACTATT 28429 30 96.7 36 ....................C......... CAGCAAGAAACCTCGGTGTCTCGCTGAGAGAAGCAA 28495 30 100.0 37 .............................. CTTCACCGCATCAATTATTTCGTCTGTTTTATCTTTT 28562 30 100.0 36 .............................. GATATACGTAGGTAACGTTGCATCAAACGACCTCAT 28628 30 100.0 37 .............................. CAAGGTGAAAAACCGAAGCCAAACCTCCCTTTCGAAA 28695 30 100.0 36 .............................. CAACTGAAGCATCAAAAATTATGTCCAATGCTCCGG 28761 30 100.0 36 .............................. CGATATCCGCCTCCTGAAGCCATTTGTAGAGTTCCC 28827 30 100.0 39 .............................. TGTAAAAGATATTGGAAAAATGTACCAAGTGTACTCAAC 28896 30 100.0 36 .............................. TTCGCTCTCCCGCTTTGACTACCATTCGCAGAGGGT 28962 30 100.0 36 .............................. CACTAACCACCGCAGGTATTCGCTCTGCGGAAGCGG 29028 30 100.0 37 .............................. GGCGATGAGATCCTCGTCTGCAAGTTGAAGTACCGCT 29095 30 100.0 35 .............................. GAAACTTGCCGAGAAAATGGCTGAATCTAAGAATG 29160 30 100.0 37 .............................. GGAGGTGGAATTATGTTCAGAGTGTATGGCAAAAACG 29227 30 100.0 37 .............................. GGGGCGAATGGCACCGCATAAAAGAAGTGTATATGTA 29294 30 100.0 38 .............................. ATTCCAAGTAGAAGTGGATGATCCTGAAATTCTGCAGT 29362 30 100.0 36 .............................. GCGGAGCCGTGATAAAAGCAGCTGTTGATCCTTGCG 29428 30 100.0 35 .............................. ACACACAAGACTTGACACGACGTGGTAGGATAGGG 29493 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 29 30 98.4 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGGTAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 159615-158720 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000009.1 Thermotoga sp. EMP Contig09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 159614 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 159549 30 96.7 37 ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 159482 30 96.7 37 ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 159415 30 100.0 36 .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 159349 30 100.0 37 .............................. GCTGCTCCCAGTGAAAAGCTGCATGTCAATGGTAAAA 159282 30 100.0 36 .............................. TCTTTGCCGAGAAGTGGCGGTTTCTTCTCGAGTGCT 159216 30 100.0 36 .............................. GTTGAAGTACCGCTTGAAGAACCCCGCAGAAAAAGG 159150 30 100.0 38 .............................. TGGAATTCCCGTTAGGCGCACAGATCATCAAAACAGAA 159082 30 100.0 37 .............................. AAATCGAAGAGCGGGAAGACTATGTTTACTATCTCTT 159015 30 100.0 36 .............................. GTTTTGAATCTTGCGCTTAACAAGATTACTGGAGAT 158949 30 100.0 37 .............................. ACCTTTTGTGATCTTCTGAAGCCGTGACATATACATA 158882 30 100.0 37 .............................. GAGTACGAGTTGTTGGGGATCTCGACGTCGTCGGCTA 158815 30 100.0 36 .............................. GTCATCATCGATTTCAACGATGCAATCGAAAACGGG 158749 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 98.3 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 88219-86644 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000011.1 Thermotoga sp. EMP Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 88218 30 93.3 38 .......A............T......... TTGAAACTCAATACTCATACGCATCCACCATATTCCCC 88150 30 96.7 37 ....................C......... ATCGTTGAATAGCTCGAACTGCCTGGCGTGGAAGAAA 88083 30 100.0 38 .............................. ATCTGGCAAATGATCGAAGACCTTGACGATGCTTCTCT 88015 30 100.0 38 .............................. ACTGGAAGCCTCTTTCGATGTCGCCTCAGGAATTCGAC 87947 30 100.0 38 .............................. AAATACAGCAACGCTTTTGAAAGTTACATCGGATATCC 87879 30 100.0 37 .............................. GTTTTGTAGTACCGGGCGACGTTGTCAAAGAGTTGGT 87812 30 100.0 35 .............................. TCTTTTTTGTCTCGTTGTAGAGCGCGTCCGCAACG 87747 30 100.0 36 .............................. CGTCAAGCCTGTAGTCGTCGGTGTCGAGGTTGTTGT 87681 30 100.0 37 .............................. TCTACGTCGAGAGAAAGCTTTTTGATTTTCCCGCGTA 87614 30 100.0 36 .............................. ACGCTATTACGTCACCAGGCCTCAACTGTTCTTCAG 87548 30 100.0 36 .............................. CCCTCCTACCAGCCTTCTCCAGATGTCGGGATACTT 87482 30 100.0 37 .............................. AGGCGGGAATCCTCACACCGAACGAAGCAAGAGAAAT 87415 30 100.0 36 .............................. ACGATGATCCGGTAATGGGCAAAGTATATGTAGGAG 87349 30 100.0 38 .............................. GTGCCGTTCGATTGTTCCGTCGTATGTTCTATAAAAGC 87281 30 100.0 36 .............................. CGGTAGCCCTGCAAAGGGCATAACCAAGTACTACCC 87215 30 100.0 36 .............................. AAGATGATCGAGCACCTGCAGTTCGGATGCAGCGGA 87149 30 100.0 35 .............................. CAAGTCTATCAGAGGTGAGAGAATGTCACAAACAC 87084 30 100.0 43 .............................. ACAAAACACCAGAGGAAGCAAAGGAAGAACTCAGAGAGCTAAT 87011 30 100.0 36 .............................. GTCCACCTTCCAGAATGAGCGGTCGTCCTGCGTTGT 86945 30 100.0 37 .............................. AACCAGAGGAGGTGTTTCTTATGTGGAAAATTAGGAC 86878 30 100.0 38 .............................. GCGGGACAGAGCGACGGAAACATACGCGTTGACGAAAT 86810 30 100.0 37 .............................. TTGTTGAGAACATCAAAAGATGGGTCAAAACATATCG 86743 30 100.0 40 .............................. GTAGGCGGGATAGGATCAGGAAAGACGTTCGCGGGGGCTG 86673 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 24 30 99.6 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ACTTCAACGGAAAGTGATTTCATAGAGGAAACTGGTACCGGAAGTTTCGAGCCTTCTGCCGTGTGATTTTCCCAGGGTTTATAACCGTAATAGAACTCGGGATAGCCGAGAATGTACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTACCTTTTCACCGTCGAATTTCATAGTTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAACGCCATTCCACACAAAATCCGATGTTCCCGGTTTTGTCATCAGTATCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGGATTTTTGTTCTTGTACCTCTGAAAATGCATTGAAACTGATTCAATATCGTGGGCCACGACTACAGGGGGAGC # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAATCACTTACATGTCATCGATTATCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCCAGTGCCAGATACACGTATCACCCACTTTGTGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 201020-202252 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000011.1 Thermotoga sp. EMP Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 201020 30 96.7 37 ...............G.............. TCGGTGATATCCTTAAAGGTCGTGCCGTAAAGCGAGT 201087 30 100.0 36 .............................. TACAGGGCTGGCAGTACGAAGAGGTTATAGACGAAA 201153 30 96.7 37 ....................T......... ACGAGTGCAGACCAGATGGGAAAATAGTTGTTACCTT 201220 30 93.3 37 ....................T......G.. TGATAGAATGGCTTGGAATCTGGATTGATAAAATCCT 201287 30 100.0 38 .............................. GGACGGTCAGTTTTTGAAATTACACACAGAAGGAGCTA 201355 30 100.0 36 .............................. TCGAAAAAAGACGTCTTGTTTTTGAACAAGAGCGAG 201421 30 100.0 37 .............................. ACAACAACCGGCGACTAAAATTCCTCGCCGTATCAGG 201488 30 100.0 36 .............................. CAGAGATTGTTTCAGTTGTTGTATCTGTGTAGAACT 201554 30 100.0 39 .............................. CGCAGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGT 201623 30 100.0 37 .............................. AGGCAAAAGAGATTGTAAAAAGATACGGAGGAAAGTT 201690 30 100.0 35 .............................. GGGAGCGCCGGGAAGGGGATAACTAAGCTTTATCC 201755 30 100.0 36 .............................. GATATATGTCACAGATTCTCGGAGTAGACGTTCCCG 201821 30 100.0 37 .............................. TCTCTGCTCTCATACAAAACAAAACAGATAGGGTTAT 201888 30 100.0 37 .............................. TGGTTAAGCGGTGTTACTATGGATATTGGTGAAAAGA 201955 30 100.0 36 .............................. CCGAGCCAATCGAGGAACTTTGTCGCACCTGTTCCT 202021 30 100.0 37 .............................. AGGGATAGTCCTGTGGGGGTTGCTGGGGCGGAACCGT 202088 30 100.0 35 .............................. TTTGCTTAATCACGATATCTTTTTTATTAATGCCC 202153 30 100.0 40 .............................. AGTGGACATAAGACGTGTCGAACTTGTCTACGACAAAAGA 202223 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.3 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CCAAAGGAAAAACACCGGAGGAAATCTACTCAACGATAGTAAAAATAAGGAAAATTCTGAAGCTTTACGATGTAGACAGTGCGGATGGTATTTTCCGGTCGAGCGATGGAAACTTCAAGGGTTACATCAGCCTGCCGGATCGCTATCTCTCCAAAAGAGAAATAAAGAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAGTACAGAATAAAACTTCCACCAACGATCTATGGATTCGAAGAACTCCGATGTAAAAATGAAAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAAACGAAAAAGGACAGTTCATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTTGCGAAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTCATTTTATAGCCAAGCTTATCTGGACTCGGTTGGT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACTTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATAAAAAAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCACGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACATGTCATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCATTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGAACCGACTTTCCAGTGCCAGATACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 294278-293041 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJII01000011.1 Thermotoga sp. EMP Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 294277 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 294211 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 294145 30 100.0 37 .............................. TCTCGGATATCAAAATGCTTGAAATTGTTGTTGATTC 294078 30 100.0 37 .............................. GAGAGATAAGAAAGAAGTGGTATCAGAACAGCTCGAG 294011 30 100.0 36 .............................. CTGGACCGGCCCGAACAAAACGGGCACAAAACTCGT 293945 30 100.0 38 .............................. ATGACATGGGAGCTGAAGTACTGGAAACATCCCGCTTA 293877 30 100.0 37 .............................. ATAGCTCGATATATGGAGTTAAAGTTACTGGAAACTC 293810 30 100.0 36 .............................. CTTTTGCTTCAGAAAGACTTTTGTCAAGCAAAGGCG 293744 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 293677 30 100.0 38 .............................. ATAGACGAAAAACGGAACTGGATAAGCGAAACTGAAAG 293609 30 100.0 36 .............................. ACTCCATGCGATATAACGGAAGGAGGGGATTGAGAA 293543 30 100.0 39 .............................. TAGCTTTATTTCGGTGATGTATCGTTTTCCGTTCCTGAA 293474 30 100.0 37 .............................. AAAATAAAGCCCGCTCTCTTGAGCGGGCTGGTTAGAG 293407 30 100.0 37 .............................. CCTCCATGCTCTTCGACGAACTACGTTCTCGAACACC 293340 30 100.0 37 .............................. ATGCAAGCAAGAATTGTGAAAACAGAAAAAGGAAACC 293273 30 100.0 38 .............................. GGCTACAGGGTATACTGGTCATCCGAAAGTCAATACGA 293205 30 100.0 38 .............................. CAGGTGGATTTCCTCATATCTCACAGGCTCACACTAGT 293137 30 100.0 37 .............................. AATCCTTTGTTTTTGACTAATATTCCTGAAATTGTTT 293070 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : ACTTCCTCGCAGAAAGTTTGAAAATATCCGGGCTACTTCCCGCTCTCGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGACTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCTTTCGGCCTCGACTGGGGAATTCTCTCGATCTTGATGCTGGTGGGGCTCATCCTCGCGATGGAAAGCTTCGAAAGAGCAAGAATAAGTTGAGATATCAACAGTAAAACAAAGGCAGGGGATTTCCCTGCCTTTTTGTTTTTTTATGGAGTTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCCATTGAGTTCAGGAGAATTTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAATTAACTGTTAACTTCCTGAATTCAAAGCACTTACATGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTCCTTCCACTGCCAGTCACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //