Array 1 88353-90028 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFM01000013.1 Salmonella enterica subsp. enterica serovar Reading strain 97-0463 NODE_13_length_140343_cov_3.30609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88353 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 88414 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 88475 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 88536 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 88597 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 88658 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 88719 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 88780 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 88841 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 88902 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 88963 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 89024 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 89085 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 89146 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 89207 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 89268 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 89329 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 89390 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 89451 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 89512 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 89573 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 89635 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 89696 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 89757 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 89818 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 89879 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 89940 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 90001 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106290-108498 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFM01000013.1 Salmonella enterica subsp. enterica serovar Reading strain 97-0463 NODE_13_length_140343_cov_3.30609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 106290 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 106351 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 106412 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 106473 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 106534 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 106595 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 106656 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 106717 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 106778 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 106839 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 106900 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 106961 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 107022 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 107083 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 107145 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 107206 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 107267 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 107329 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 107390 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 107451 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 107512 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 107573 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 107634 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 107696 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 107798 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 107859 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 107920 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 107981 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 108042 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 108103 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 108164 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 108225 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108286 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108347 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108408 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 108469 29 96.6 0 ............T................ | A [108496] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //