Array 1 1802-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHEW01000023.1 Acinetobacter baumannii strain MRSN351524 MRSN351524A_contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1801 30 96.7 30 ............................T. CCAAAATGGTCCTTTTTACCCCTTCATCAA 1741 30 96.7 30 ............................G. TGAGTATGTCATTGGCCACAACGTTGAATA 1681 30 93.3 30 ............................CA GAACAATAGGAAGCCTGATGTGCCATCCCG 1621 30 96.7 30 .............................C GCTGCGGGATTTGTTGAAGTGTTTTCAAAT 1561 30 93.3 30 ............................GA TTATTCTGGTTATAACTTTGTCTGTGTAAT 1501 30 100.0 30 .............................. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 1441 30 96.7 30 .............................G CCACGTCAACAGCAGCATTGGCATTAGTAA 1381 30 93.3 30 ............................GC TAAAGGCTAAAGCAACCAAGGTGAATCTTA 1321 30 93.3 30 ............................GA CGAGCAACACGTCAACGAACTCAAAGCAAA 1261 30 93.3 30 ............................GA CATGGCGAGTTGCAGCAGGAATACCATAAT 1201 30 100.0 30 .............................. CTTGAGTTCAAATAAACGGACAAATGGGAT 1141 30 93.3 30 ............................GA GTAATGCAGCACCAACAGCAGTAATCGCAG 1081 30 93.3 30 ............................CA AACGTGGGTTACATCTAGTTGCCTGAGGAG 1021 30 93.3 30 ............................TA ACTTAGACTGAATATCTGATGCTAAAGATT 961 30 96.7 30 .............................G CCGGTGTTGATCTGATATGCGTTAGCCATT 901 30 100.0 30 .............................. ACGCGCCAAACATGAATGGGTTTAAAACGT 841 30 96.7 30 ............................T. TGTGCCTCAATATGATTTCAAATATGGTTT 781 30 93.3 30 ............................GC CAGGGGCAACATACCGCGCTAACGTTAGTG 721 30 93.3 30 ............................GC AGTATTGACTGTCGGACTTGTGACAACCTG 661 30 93.3 30 ............................GA CAGGAACCGTCACTGAAAGCGCACAGGCTC 601 30 96.7 30 ............................T. GTTTCAGTTGCATAGTCAAACGATGAGAAC 541 30 100.0 30 .............................. TAGCAGGTGATTACGCAGTCTTATCTAATG 481 30 100.0 30 .............................. TAAGCAAGGGCTGACCCCGACCGCCGAGCA 421 30 100.0 31 .............................. TGACTTACAGCGTTATGAGAGATCCCTAGTT 360 30 93.3 30 ............................TG ATGATTGGATAGAGATTCATGCGTTAGATT 300 30 96.7 30 ............................G. AAAAAAGAACATTTCCCGCCAAAATTGACG 240 30 96.7 30 ............................T. TGGCAACCAGTCGCCCTATGCGACCTGATA 180 30 93.3 30 ............................TG TAAAAAAGTTTAATAATTTTTTCAGTGAAT 120 30 96.7 30 .............................G TTGCGATTCTTATTATGCGTGAAGTTACTA 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 30 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TTCACGGGTAAAAGCTGTTTGACAGCTAAAT # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 181-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHEW01000060.1 Acinetobacter baumannii strain MRSN351524 MRSN351524A_contig00060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 180 30 93.3 30 ............................TA CAGCAATAACGACCAAACCGATATAGGTAA 120 30 100.0 30 .............................. ACGAACATCATTTACTTGCTGAAGTTGCTT 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 97.8 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : CAAAACACGAAACGTTTGCCATTAATGG # Right flank : TGCTCTCAATAATTCGCAAGTAAAAGTGGAT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 78818-76445 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHEW01000022.1 Acinetobacter baumannii strain MRSN351524 MRSN351524A_contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 78817 30 96.7 30 ............................A. AACGAGAAGCGTTGCGTAGACTTACAACTC 78757 30 96.7 30 .............................C TTGTTATTTCTGGTAATAAATATCAGAACA 78697 30 96.7 30 .............................C AAATCTAAGCCATGCTCATTAGGCATAGGT 78637 30 96.7 30 ............................A. CCTGTCTCTTGGTCAATCTTGGCACGTAGG 78577 30 96.7 30 ............................A. TACCGACTGATTGTTGAGTGGCAATGTTAA 78517 30 100.0 30 .............................. ACACATGAAGTCAGCAAATGCCACCATGTT 78457 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 78397 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 78337 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 78277 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 78217 30 96.7 30 .............................G ATGCGGGTTGTCCACCAGTTATGACTACTT 78157 30 93.3 30 ............................CC AAGCTGTGAATGTTGGTAATGCTTTAAGCG 78097 30 93.3 30 ............................CG TCAAAACAATCAAAAAAGCAATGAGTACAA 78037 30 93.3 30 ............................AG TGAATGGGATTTATTCGCAAGGTGATATTA 77977 30 93.3 31 ............................AA AAAGTTTTTTTGACAATCAAGCCGGCAAGTT 77916 30 96.7 31 .............................G CATCGAAGTCATAGAACGCTTTGAGTTTCCA 77855 30 93.3 30 ............................GC AAGTGTCACCTTTAAGTGCACGGAAGAAAT 77795 30 96.7 30 .............................C CATTCTCGCTAAGTGGCATCACACGCGATG 77735 30 100.0 30 .............................. GGTTGTTTAGTAAGTTCAAAGCCCGTTGTA 77675 30 93.3 30 ............................CA ATGGATTTAAAGATTTCAACCGCTTGGGAG 77615 30 93.3 30 ............................AG TTGATATGATTATTAATATTAAAGTTGTTT 77555 30 96.7 30 .............................G TGCCCATTCCCGCAAACACGGCGCAACGCT 77495 30 93.3 30 ............................CA TGACCCAACCACGTAAATTCATACCACACG 77435 30 93.3 30 ............................GC TCCGTAATTAATCAAGAAATAATCAAATTT 77375 30 93.3 30 ............................AG TAGTTGCACCAGACTCCGCACAATCTAAAA 77315 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTATGAAT 77255 30 96.7 30 ............................A. CATCGAAATTTAGTTCTAATTCTTTAATTT 77195 30 93.3 30 ............................AG TCTTTAATGTCGGCAACATGCTGTGCAAAA 77135 30 96.7 30 ............................G. AAATATGCTGCTTTAACCCGCCAAACGAAT 77075 30 96.7 30 .............................G CATTAAGACGAATGCGGGCAATTGGTAATG 77015 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 76955 30 93.3 30 ............................AC CAGAAAAGCAGAGTAAAGCTTCACAGCCAT 76895 30 96.7 31 ............................G. AAAAAAGAACATTTCCAGCAAAAATTGACGA 76834 30 100.0 30 .............................. GCTGCCTGCAAACTTGTTTGGGGCTTTATG 76774 30 93.3 30 ............................AC TGGAATTCAGCAGTAAATAAGGGGTTAAGA 76714 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 76654 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 76594 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 76534 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 76474 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 40 30 94.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTAACAACTTTAATGGAGAAGCCTTAATC # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCTACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //