Array 1 33422-33787 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGW01000044.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 33422 33 100.0 33 ................................. CACACACAACACTGTGTAACAATACGCCGGCAT 33488 33 100.0 33 ................................. CATATCGTGGGTCGTAGCTTTGATAAGTGCTTC 33554 33 100.0 34 ................................. GGCTGGCAGGAATGGATGAGCAAAGCATCCGATA 33621 33 100.0 34 ................................. GGCTGGCAGGAATGGATGGACAAAGCATCCGATA 33688 33 100.0 34 ................................. AAAATACCGTTGGAATCGAAGACAACCCTACTGC 33755 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 6 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATTGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTTGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAACCTATTTAGAGTGAAAATTAAACATAATATTTCATTAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 34535-35505 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGW01000044.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34535 33 100.0 34 ................................. ATAGATGTTTCCAATGACTTTCGCATAATCTTCC 34602 33 100.0 35 ................................. CTTTTACCTTGTATGTACAAGGTTTTTGCCCTGAA 34670 33 100.0 35 ................................. CATCCGGATGACTGTATCAGCCAAAAACGGATATT 34738 33 100.0 33 ................................. AAAACTGGATATGACCCGGTGTTACAGTCAATC 34804 33 100.0 34 ................................. GCCACAGCAGGAGTAACGAAAGTAAGCATTGAGG 34871 33 100.0 35 ................................. TTTCCAGTACCAAACATACCAACGTAAATACGCAA 34939 33 100.0 34 ................................. CACACCGAGGTGCTGACATATGGCGCGTATCAGT 35006 33 97.0 34 .C............................... TACTTCTCCAAGATCATCATAATAAGGATTTTTG 35073 33 100.0 34 ................................. ATACACTTCCGCGCCAGATATATCGTGTTTTCCG 35140 33 100.0 33 ................................. TGATTGCTCCACCATCTCCACACGATTTTGAAA 35206 33 100.0 35 ................................. CGATACGTGAAGGCGAAGCTCCACATTGGGGCGTA 35274 33 100.0 33 ................................. CCGCCACATTGACCGTTTGACTAAACGGAGCAG 35340 33 100.0 33 ................................. CTTGAAGTTATGCAGGGCAAGTGGGAGGGCGTA 35406 33 100.0 34 ................................. AAAGAGGTTAACGCCTGCTCGTGTACCTTCTGCT 35473 33 84.8 0 ......T.......T.........A...T..G. | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAACCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTAATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGCTGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAGATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10972-16890 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGW01000061.1 [Clostridium] symbiosum strain AM39-1BH AM39-1BH.Scaf61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 10972 32 100.0 34 ................................ TTTTTTACCCACTTCTGCACAGCGGCTCCATTTG 11038 32 100.0 34 ................................ CTTATACATTGTTTGGTAAATCATATCTACCCAC 11104 32 100.0 34 ................................ TTGTTAACCGTATCGGGCGTGTGCTTATCACGTC 11170 32 100.0 34 ................................ AGGAAGAGCTGAAGGTGAGTGAATGGGCAGAACG 11236 32 100.0 33 ................................ TTTATATTTGTCCGGAATGCGGATGCGAAATTT 11301 32 100.0 34 ................................ GGTTCTTCGGGCCTTCAAGCGGAACGTTATCGGG 11367 32 100.0 33 ................................ CTAACGCGGAACTTGTTGAGTTAAAAACGTTAT 11432 32 100.0 34 ................................ TTGTATTTTTCGGAATTACTACGGGAGACGCCCT 11498 32 100.0 34 ................................ AATGAGTGGTATAATAAATACATAAACAAGAGGT 11564 32 100.0 33 ................................ CTTTTCCCGGACAAAAATCGTAAACCGGATGAA 11629 32 100.0 34 ................................ GTTGAGTGGGGTGGGATAGATGAAGTCTTGCAAG 11695 32 100.0 34 ................................ GGATTTAGGTTTGTGATTGACTGGTTAAACGAGA 11761 32 100.0 35 ................................ CATTTTTAGCGGTTGGATTTGAAGTGGAAGGGACC 11828 32 100.0 35 ................................ CCGTATCAAGCATATGTGCAGAGGGGGATACTGAA 11895 32 100.0 33 ................................ TCCTTCCCAGTCCTCCAGTTTAATTCCAGCGCT 11960 32 100.0 34 ................................ CGGCTGGTTTTGGATATATCGACATCATGAAGGA 12026 32 100.0 35 ................................ TCCAATCGCCATTTACTTTATAAATATAAAACTAA 12093 32 100.0 34 ................................ ATTTTACGGAGGATATTTATATGCAGAATGCAGT 12159 32 100.0 34 ................................ CCAGATTGTTGGCACTTTGTTTTGTTATATAGTT 12225 32 100.0 35 ................................ ATACTGGCCAGAAATAGAACTTCCATCCGCGTGAT 12292 32 100.0 33 ................................ ACCGGCGATAATAGCCTGTTTATCAGCTTCTGT 12357 32 100.0 36 ................................ TTTGAAGCACTGAGTAAATATGAAAATAATAAGGAG 12425 32 100.0 35 ................................ GCCGGGGCCTATGGCTGGGAAACACGCCGCAGTAT 12492 32 100.0 34 ................................ ATCCAACACCCGGTAGCGTTCTGCCCATTCACTC 12558 32 100.0 35 ................................ CAAAGTATCTTTTAACGGCCGCATGCTGCCATCTG 12625 32 100.0 34 ................................ AGCTTCTTCGTCATCGTCAAATTCAATATGTGCT 12691 32 100.0 33 ................................ ATATGCAATATGATTTGAACCACAATCCAAACA 12756 32 100.0 36 ................................ TATTAACGGGCAATGCCGCAGGGCACGCATCCGGTA 12824 32 100.0 35 ................................ CTGAATGCTTTTTTCCAGGCCATACCCACGGCCTT 12891 32 100.0 33 ................................ CCTTCTACTTACAAATCCCGGTTCTTTCAACAA 12956 32 100.0 34 ................................ TTCACCGCATATAGGGCATTTAGTAAGTAATAAT 13022 32 100.0 35 ................................ ATGTTACATACTTTCAAGAGCCTATCGTGACCCGG 13089 32 100.0 34 ................................ GCAAATTATGAAACTGGCCGAAATACGCCGATGG 13155 32 100.0 33 ................................ AACAACTTTTACAGAACATTCGTTCGTCTCCCT 13220 32 100.0 36 ................................ AGAAGCCCTGACAAAATATCTGAAAGATGGGGAAAA 13288 32 100.0 35 ................................ TTCGTTGGATGCAGAATAAGCATAAAATCCATAGC 13355 32 100.0 32 ................................ AATCTGATACCGGGACCCCATTGTATCGCTTG 13419 32 100.0 34 ................................ CCAGCATTCCTTACAGGTTTTTCCTGCACATTTT 13485 32 100.0 35 ................................ CATTTTCTTCTACAATCTTTATCCGATCCAAGCCT 13552 32 100.0 34 ................................ CTTCTATTTTGCAATCATTCAGGACGGCAGTTCC 13618 32 100.0 37 ................................ AGGCTTTGATGTTTGCAGGCGGTTCAATGCGGAGGTG 13687 32 100.0 35 ................................ AGTTTGCGATCGCACCGCTCTGGCGACACTGTTAC 13754 32 100.0 32 ................................ CTCCAGTGCCGGAAGAATCGGAAGCAGTTGGT 13818 32 100.0 33 ................................ AGAGAGATATAGAAAGATTATTTGTGTCCGAAA 13883 32 100.0 33 ................................ CATATATTACCTTGGCCTTTAACGTGATTGTTG 13948 32 100.0 36 ................................ GCGGATCCTTTGCATCATCCTACCAGGGATTGGCCC 14016 32 100.0 34 ................................ ATTCGATGACTCGACGGCTCGCTGATCCATAACA 14082 32 100.0 35 ................................ AATTATTGGCTTGTTAGAAGGCATGCTTATAAATC 14149 32 100.0 34 ................................ ATTGCCATACGATCTATGAAATTGCTGAATGTTT 14215 32 100.0 33 ................................ TCCACAAACTTTATGGAGGTGTTGTTTATGAAG 14280 32 100.0 34 ................................ ATATTAGCATCCATGTCGGACGATACAGACGATT 14346 32 100.0 33 ................................ CTGCAGGTAGCAAGTGAGCAGGTGCCGTTCGGA 14411 32 100.0 35 ................................ GTCCGGTAATCTCGCTGGCAGGGCCAGTGGAAGAA 14478 32 100.0 35 ................................ TGATGCGCTGGCACAGAGCAACCAGCAGGTGAAGT 14545 32 100.0 33 ................................ ACCAACAACAAGCCGCAGATTGCATTTACCGTC 14610 32 100.0 33 ................................ AATCCCCTTTAAAATATCTTCATTTAGAAAAGC 14675 32 100.0 35 ................................ ATTCACCTGGAGCTGTTTCCCACTGTAGAGAAACG 14742 32 100.0 33 ................................ TGGGGAGCTGCCCGGTTTTTGCGAGTGAGTATA 14807 32 100.0 35 ................................ TTAAGGACCTGGGCATTGTTATGACGCAGAGTGCC 14874 32 100.0 35 ................................ CTTCACTTTTCCCAGTAAATGTAGACTGCCTGGTG 14941 32 100.0 33 ................................ TCATTGGCAAAATAGGTGAATTAGTACAGATAA 15006 32 96.9 36 .....A.......................... CGTCCCATCCACCACGCCGGGCATAGCGACGGTCAC 15074 32 100.0 36 ................................ ACGGGCCTTTATTTTTACAGTATCTTCCGGCTTCAA 15142 32 100.0 33 ................................ CATAAGATTACTTCAGCCTTCGTTCCTGTTGTG 15207 32 100.0 35 ................................ GTATCCCAAAATCATAAAATTTTGCGTTGTGCATA 15274 32 100.0 33 ................................ GACATTGCGGCCATGCATGGATTTAATCCACGG 15339 32 100.0 34 ................................ ATGCCGACCCGCATCTTGATAACAGTCATGCAGA 15405 32 100.0 34 ................................ ATCCACAAAATATCTCTTCTTCCTTCCGTGTAGC 15471 32 100.0 32 ................................ GATATAACAGATGCAATAAACCCAAATACCGG 15535 32 96.9 34 ............G................... TTATCTGCCTTGTCGCAATGTTCACATGGTTTAT 15601 32 100.0 34 ................................ TGATACGGCCGCAATTGGCTATCAGACAACTATC 15667 32 100.0 33 ................................ ATCCCAGACTGCTTTTAAGCCATCCCAGAGTTT 15732 32 100.0 34 ................................ TATTGGGCCGAATGCTCCCATGACTTGAACATTT 15798 32 100.0 33 ................................ AGTTCAGCCAGTTTACTTCATCCGCCGGAAACG 15863 32 100.0 33 ................................ CACTAAATCTTCAGTATCTGTTGATAAACCATA 15928 32 100.0 34 ................................ CTTTAAATAAACCGTATAAATTCCATTTAGCGGC 15994 32 100.0 34 ................................ AGTCTCAACTGGCCATTCGTATAAGACTTCATGC 16060 32 100.0 36 ................................ TTAAAAACGCATTCCGCTAAGGAATGTTGGGCGGTA 16128 32 100.0 35 ................................ AATGCGGGTATCCGGTCGCAACCCCGGAGGAAGTC 16195 32 100.0 34 ................................ GGGGTTACAGAAAAATTTCTACAGGAAGCTATTG 16261 32 100.0 33 ................................ CTTCTTATAACCACAATACTGTTTCGCCTTTGT 16326 32 100.0 34 ................................ CGAAGACGACGCCATAAGCTCCGAAGACGACGCC 16392 32 100.0 33 ................................ ACCCTGTATTTTTAATGACCTACATATTAGTAT 16457 32 100.0 35 ................................ TTACAAAAGTGCTTTTTCCGGTCAACGCTGCAATA 16524 32 100.0 35 ................................ TCCAATGTCAGAGCATTATAACGACAAAGGCCATG 16591 32 100.0 37 ................................ CCTTACCGGATCGAGGTAAAAGAGTATCACAGCAGCC 16660 32 96.9 33 ......A......................... ACGAACAGTATCAGTCGGCTTCACCTTTGCAAG 16725 32 100.0 35 ................................ AAACCGGATGCCGTTGGTTTTTAGATGCTGTTTTA 16792 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 16859 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 90 32 99.8 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //