Array 1 163669-160833 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQR01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_59_S329 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163668 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163607 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163546 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163485 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163424 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163363 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163302 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163241 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 163180 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 163119 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 163058 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162997 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162936 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162875 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162814 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162753 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162692 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162631 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162570 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162509 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162448 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162387 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162326 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162265 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162204 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162143 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162082 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162021 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161960 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161899 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161838 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161777 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161716 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161655 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161594 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161533 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161472 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161411 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161350 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161289 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161228 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161167 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161106 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161045 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160984 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160923 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160862 29 93.1 0 A...........T................ | A [160835] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182280-180176 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQR01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_59_S329 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182279 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 182218 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182157 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182096 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182035 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181974 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181913 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181852 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181791 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181730 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181669 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181608 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181547 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181486 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181425 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181364 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181303 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181242 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181181 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181120 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181059 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180998 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180936 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180875 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180814 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180753 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180692 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180630 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180569 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180508 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180447 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180386 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180325 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180264 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180203 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //