Array 1 2813-3010 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JXIF01000096.1 Staphylococcus aureus strain SA-085 Contig96, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	===========================	=============================	==================
      2813	    27	 100.0	    29	...........................	TTGTCTGTAGAAATTGAGAATCCAATTTC	
      2869	    27	 100.0	    29	...........................	CATTATTGTAAGCTGACTTTTCGTCAGCT	
      2925	    27	  92.6	    28	...G............C..........	TTGTCTGTAGAATTTCTTTTTGAAATTC 	CA [2940]
      2982	    27	  88.9	     0	...G.................A...A.	|                            	T,T [3001,3003]
==========	======	======	======	===========================	=============================	==================
         4	    27	  95.4	    29	TCTATGTTGGGGCCCCGCCAACTTGCA	                             	       

# Left flank :   TCTTTTTGTGCAATACAAAGATAAACTACAAACGATTATTGGTGCGCATAAAATATACCAAGGCAATAAACCAGTATTAACATTGAAAGAAATCGATTTCCGTGCACGAGAAGCGTTAATAAAAAATAAAATATTATATAACGAAAATCGTAATAAAGGTAAGCTTAAGATCACCGGTGGCGGTAATAACTACACAATAGATTTAAGCAAAAGATTACATTCAGATCTAGCAAATGTTTATGTTAAAAATCCTAATAAAATAACTGTTGACGTCCTCTTTGATTAGTATATGAAGGTGACTTATACTTCATGCACTTTAATTCCAAATCAGATTATTCAAATGATAATTTTCAAAGTGTATGATGTATATAATAGGTAAAATTTTCTATATATTTAAATGGAATTGAGAGTAGGAATGTGACAGAAATGGTATTTTATAAAATTTATTTCGTTGTCACTCCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCT
# Right flank :  AAATGCTTGTTACATGGGCATTTTCATTCGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTATTCCTTCATTTAATGATTCAATTATTATAGCAATACTTTATTGTCCCATGATTAATGTTCTTTTAATGAGACATAGTAACTATAAAGTTTAATAATCGTTCTAAATCTAGCATCTTCTAGTTTGGTTTTCCCATTTCTTAAATCTTGTACTGTTTGATATGGAACTCCTGAATTTTTCGAAATTTTATAGCCTGATTCAGACTCAAACAAAGATTGAAGAGAG

# Questionable array : NO	 Score: 2.63
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCTATGTTGGGGCCCCGCCAACTTGCA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.50,-4.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.64   Confidence: LOW] 

# Array family : NA
//