Array 1 209862-205615 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCO01000005.1 Lachnoanaerobaculum gingivalis strain KCOM 2030 KCOM2030_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 209861 30 100.0 34 .............................. TCCATCAAGATTGCCTTATCAAATTTACAATGAT 209797 30 100.0 35 .............................. TTTACAAAAGCGTCGGAATCCTTGATTTTGCAGTC 209732 30 100.0 35 .............................. CTTTTTTACTGTCGTCAATTTTGAGTTCGGCACCT 209667 30 100.0 35 .............................. TATTATCCGTTTTGTAATCTATATATCCGAAACCA 209602 30 100.0 37 .............................. GATAGTAGCAATCTCTTACTATCCAATAACCATTTTC 209535 30 100.0 36 .............................. TCTTATCAGATACTCTCTTGGAGCGGTATCGGCAAA 209469 30 100.0 36 .............................. AACAAAGCCTTCTCCACCCAAAGCCGTAATTACATC 209403 30 100.0 35 .............................. TTGCAAGCAATCAGGCTTTTCAAGGGTGTCATTTT 209338 30 100.0 37 .............................. CTGAATTTTTGTATCATATATACCTCACTATGGATTG 209271 30 100.0 36 .............................. TATATAGAAAGTGTATCAAATACAAATACTACAGAG 209205 30 100.0 34 .............................. TATTCTGCTCGCCCAATCTTCTCTGCCCTGATGA 209141 30 100.0 36 .............................. TTATTAAGTATCATAGAATCTACATCAGTAACACTT 209075 30 100.0 35 .............................. ATATAAAGGCTATAAGAATCAGTACGGAGGCTTAA 209010 30 100.0 35 .............................. TATGTACTTTCCGAAAATATTCGTGAGGGTGTAAA 208945 30 100.0 35 .............................. CCGGAAGATAAAGCGGCTGCAAAAGCACCTGAAAA 208880 30 100.0 37 .............................. ACGATTGAAAAGCGCGTACACATTTACAAGCATGTTT 208813 30 100.0 35 .............................. TTACTTTTCTCTTCTCCAGTACGTCACAGAGTCCT 208748 30 100.0 36 .............................. GATTTCCGCATCCGTCCAGTCATATATTGGATTTAC 208682 30 100.0 36 .............................. TGCTCCACCTTTGCCGTCGTCTTTTCCTCTTTCTTT 208616 30 100.0 35 .............................. GTTGTAGTCTGTATAAGACTGACTAACAGCATACA 208551 30 100.0 36 .............................. CAATATTTGACACTATCAAAATGCCAAATATTATGC 208485 30 100.0 36 .............................. ACACAATATTACTTGTTGCAATATCGGTTATATGTG 208419 30 100.0 38 .............................. GAATAAATCTGATGTGGATATGGAAGGCTTTTGGGAGA 208351 30 100.0 34 .............................. CCCACTGATCGAGTATCCTGCACCGTCCACTACA 208287 30 100.0 37 .............................. TCCTCCAAACATAGCTGCTATAAAACCTCCTACTGCT 208220 30 100.0 37 .............................. AATATGATAACAGATCGCTTTGCAAATCTTTTAAAAA 208153 30 100.0 35 .............................. TCTTGAGAAGTTTTTTGTAAATCTAAAATCCAAAG 208088 30 100.0 37 .............................. TACTCTCGCCTAAATCCGATCGTTTTTCTTTTTCACA 208021 30 100.0 35 .............................. ATGCGCTTCCCTGTACTTCCTAGCGAGTACAAAGT 207956 30 100.0 36 .............................. CGGCTATACGTGCCCACGGATGCAGATATAAAGGCT 207890 30 100.0 37 .............................. ATATATAGGGTATAATAAAGACAGTTAAGAGAGATAA 207823 30 100.0 38 .............................. CGGGTATAATATTCAACACCTTCCGCTACTGCCCTACC 207755 30 100.0 35 .............................. TCTATGATACGACAATTTTCTTCTAATTCATCAAG 207690 30 100.0 36 .............................. AGCTCTTCAATAGCTTTAGACTTTTGATGCTGCAAG 207624 30 100.0 34 .............................. AAAAGACTTTTCCGCACTGTCCAAAGCGCTCTCA 207560 30 100.0 36 .............................. GGAACTTACAGCCTTAGTGTACAGGAGTTAAAGGCC 207494 30 100.0 37 .............................. CTGACTTGCAAACTCTGCTGTCTGTATCTTAATCCTC 207427 30 100.0 35 .............................. TATTGTAAAAAGGAGAAAAAATGAGAAGAATAATT 207362 30 100.0 35 .............................. ATGGAGTTTGCCAAGTTGATGAAGTAGCGAAGTAA 207297 30 100.0 36 .............................. ATCTTTGTACCACCCCAAAATTCTCCGGCAGCCTTT 207231 30 100.0 36 .............................. GCAAGCAAAGCCGACTATATGTTTATAGCTCATTGC 207165 30 100.0 36 .............................. GATGTAGATGTGAAAGAGTTTGAAAAATTCGGATTC 207099 30 100.0 36 .............................. TTGCCCTTAGATAGGTTTAATGCTCTGTACAGCCTT 207033 30 100.0 36 .............................. ACGACAGACCAAATTGAATACATGCGGTGGCTCTCA 206967 30 100.0 38 .............................. TATGTATCAGTGCCGGTATGGATGGTTAAGCAGGCGAC 206899 30 100.0 37 .............................. TAGTTCTATGCAAAAAGGCATGTCCAAGCTCATGTGC 206832 30 100.0 36 .............................. GCCATATTCGTTCTTGTGTTTAATATCATCTTATCA 206766 30 100.0 36 .............................. ATCTTTTGAGTTAAATGCAAGCGGTATAAATCTATC 206700 30 100.0 35 .............................. AATGTCGCAATTTTGTCGCACAGATTTAATCAAAA 206635 30 100.0 35 .............................. GAATATTCACTGAGAGGCAAAGTGAAAACGATATT 206570 30 100.0 36 .............................. AATGGCACCTTTATGGATTTAATCTTTCCGGGGTCA 206504 30 100.0 38 .............................. ATATAGATTTTGCATGTGTCTATATGAGCTACATACAG 206436 30 100.0 36 .............................. GATATAAATGAGCTTATTCCTTCTGTTATAGATGAA 206370 30 100.0 36 .............................. TATGAATGGTGATTGATGATTTATACCGATAACACA 206304 30 100.0 35 .............................. CAACAGTAACAGAGGCATCCATTGCTCCACCCTGC 206239 30 100.0 35 .............................. TATCTTTTTCTATAGGTCACTTCTTCAGATTCTTC 206174 30 96.7 37 .................G............ TTAAATAGGTATATCCTTTTCCATATCCAAAATCCTC 206107 30 96.7 37 .................G............ CTACTTTAGGAATATAGATTTGTGTGCCTCCAAACTC 206040 30 96.7 35 .................G............ TAAGATAAACAGGAGTTAAATTCTATTCTTCTAAG 205975 30 96.7 38 .................G............ TTCTCTATAATCGTCTTCGCTATTTTCTGTACTGCATC 205907 30 96.7 35 .................G............ CTTATAACATTGTCCTCTTTATCTCTCTCATATTC 205842 30 96.7 35 .................G............ TGTCCTCCGCACTCTTTCTATACAGCGCATGAATT 205777 30 96.7 36 .................G............ TGTTGTAATACTTAAGAAGTGCCTCGGCTTTTTTTG 205711 30 96.7 37 .................G............ TTTTGCGGATAGTATCCTTGTTCCATACTTGCGTAAT 205644 30 86.7 0 .C.A..........G.........A..... | ========== ====== ====== ====== ============================== ====================================== ================== 65 30 99.4 36 ATTGGAATATAACCAGAATGGAATGTAAAG # Left flank : AGTAGAAAAATACAAAAAGATTATAGCTTCTAAAATAAAGAGAAACGGAAAGTGTAGCACGATTGTAATTGGGACATTTGCCGGAGAAGAAAATGCGTTTTTGATACAAAATGCCTTTCCGGTTAAATCGGTTTATTTGGATCATGTGCATACGATTCAGGGAAATCCGATTACAGTACACAAAAAATTGGATAAAGAACTTCGGACAAAGCTGAAGGAAGTCATCGCTATGAAGAAAAGAGGAATCAAACTGTTTTTTACAGATGTAGATATGATTTTAGAACTTATGAACAGGTTGAAATAGGTAGTAAATTTTAGAACTTGATTGCTATGCTAAGTTTCAAGGTGCAAAAATTTCACCATGAATACGTGTAAAGCAAGTGCGATTAAAAATCTTGACCTTAAAAAAGAAATTTCTGAAAGAAAAAGTGTATCCAATACTTGACACAAGGGTGGAATGTAAAGTCTTTTTCTAATCCACTCTTTGCAGTGCCGTCAGG # Right flank : TAAAGAGCAGGGGATTGTGATAGTGGAGTATCTTGGATGAGCAATAAAAAACAAATATGATAAAAATAAGCAAGTATATGGATGCTGAAAATATTTATATATTAAGTAAGCACTATGGAGTTCTTATTTGGTTAATTACAGTCATACTTTAATTTATTTCGTTTGGCTATAATTATAAAATTCAGAAACAGGAGAATTTTTTAGGTGATAAATAATTCTTAATAAATGGAGTATGATTTAGAAACTGTAAAAATAATAGTATTTATACTTTGAAGGGGATATAAAAAGACATAAAGTTTTATATCCTCTTTTTGTTTATATAAGTTGAGCAAAAAATGAATAAAAGCTGAAATCTAAAATGTAATAAAAATTTCTATCAATATACTAAAAATTCGGGAAAATAAGATGCAAATTTTGTAATAGGTTATGCGTTTAACCGTTGTGAAAGCCAAATTCCTATTGTAAAATGGATTTGCTGAAAGGGGAATATAACCTTTTAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGAATATAACCAGAATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 302690-311698 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCO01000001.1 Lachnoanaerobaculum gingivalis strain KCOM 2030 KCOM2030_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 302690 26 96.2 39 ..................A....... CAATGTTTAACAGGGTAAAGGCGATACAGTCCAACTTAA 302755 26 96.2 39 ..................A....... CAATTTGAATACGCTACAGCAATATCTTACTAACCTTGT 302820 26 96.2 39 ..................A....... CAATTTTAAAGCAAGTACTTTTTCATAAAATCCTCCTTT 302885 26 96.2 41 ..................A....... CAATGCATTGGCTCAAAATCTTGATAACTATGATAGAATGA 302952 26 96.2 40 ..................A....... CAATTGTTAAAATCAAATTCAAAATTACTTTTAGAAAGTT 303018 26 96.2 41 ..................A....... CAATGAAAGTGCCTCTATGCCACTAACAGCAGAAGACGAAT 303085 26 96.2 40 ..................A....... CAATGACTTAACCTTTATCGCTCCCAGTTCAAGAAACTCC 303151 26 96.2 39 ..................A....... CAATATTAAAGACCAGTATTTTCAATCACTTGGACGCAA 303216 26 96.2 39 ..................A....... CAATTGTCATCAATGATAATTTCAAAGTCGGACGGGGGT 303281 26 96.2 39 ..................A....... CAATTAGCTTAGGCACAATCAATCAAAATGGCAGTACAA 303346 26 96.2 40 ..................A....... CAATGTTAAGTTCTACATAGCTATCATAGTTAGCGTACTG 303412 26 96.2 40 ..................A....... CAATAAGATATCCGTGTTCGCCGGCAAGCATGTTTGGAAC 303478 26 96.2 39 ..................A....... CAATGTAGGTGCAATAGGAGGATTTGTAGCAATGGCATT 303543 26 96.2 41 ..................A....... CAATGCAAAAACTCAAAAGGAAAAAGGGGAAGAAACTTATA 303610 26 96.2 41 ..................A....... CAATTGATACCAAAACGACAGGTTGGTATTGTCCTACTTGC 303677 26 96.2 40 ..................A....... CAATAGAAGTAGCCTTTTTATAAAATTCAATGTTGATATT 303743 26 96.2 40 ..................A....... CAATGCGGCTATCTAGTGAGAATTTTTCATAGATTTCTTC 303809 26 96.2 39 ..................A....... CAATGGTAATACTTCTGCTGATAACAGCTTTAATCGTAA 303874 26 96.2 40 ..................A....... CAATCGGCATCCCAATCCGAACAATACAAGACTGGGAATA 303940 26 96.2 39 ..................A....... CAATAAGTGTTGCCAAGGCTGCAAGTGATATCAACGATA 304005 26 96.2 40 ..................A....... CAATGCAAAGTTTGCTTCAGAAACTTGATTCGGAGTCATC 304071 26 100.0 38 .......................... CAATTCATCTTCATGATAAGCTACTATTTCTTTACTAT 304135 26 100.0 40 .......................... TAATTTTCCAAATATTCCGGTTATCATATTCCATGCCTCT 304201 26 100.0 39 .......................... TAATTATACTTGCAAATGCTTTATTTACAATATTTCTAA 304266 26 100.0 40 .......................... TAATATGGATAAATACAGATGGCAGATGGTTTGTAGTTGA 304332 26 100.0 39 .......................... TAATTCAGTGAAACTGAAATAAAGAGATTATGGGAACTA 304397 26 100.0 40 .......................... TAATGTTTTTAGGCAAGAAGATGTGCTGCATATAAAAAAC 304463 26 100.0 39 .......................... TAATAGCTCAAGATTAAAGATTGCAGCAGAAAAGGCCAA 304528 26 100.0 40 .......................... TAATGCGTTTGTCCCGTATATCTGGGATTTGGGTAACAGA 304594 26 100.0 40 .......................... TAATAATTTCCCGGCTATAAGCTAAAATTGCCGATACAAT 304660 26 100.0 42 .......................... TAATGCTTTTACAGATGTAAATCTGGGAACAATCAATCAGAA 304728 26 100.0 40 .......................... TAATTGGTAATAACTTTTTTGCAACAGGTAGATCATCAAG 304794 26 100.0 40 .......................... TAATTACAAGTGCCATGGGTGATGATTTAAACATAGATAT 304860 26 100.0 40 .......................... TAATTACACCTCCGATAGCATTTATAGCATTAACTATTAC 304926 26 100.0 39 .......................... TAATAATCATGAAGCATATGATAGATAAGGATAAAGTAA 304991 26 100.0 38 .......................... TAATGAGTAAAAAAAGGAATAATTTACGGAATGATTTT 305055 26 100.0 41 .......................... TAATCTTTCATTTTTGTTCCCCTTTGTTTTTTATTTATATC 305122 26 100.0 40 .......................... TAATTGCAGCGCAAAATACTATTACGTCTAATAATCTAAC 305188 26 100.0 40 .......................... TAATTCGGACATGTTCAGTCGGGAATGTTGTCCGATTTAT 305254 26 100.0 40 .......................... TAATTGGAAAGCCATCAACGATGAAATTATCTTGTTCATC 305320 26 100.0 39 .......................... TAATACCAAAGATATACAAGCCAATTACATTATCATGAC 305385 26 100.0 40 .......................... TAATTATTCCGACTTATTCCAATGTTAGAGCCTCTGTCCA 305451 26 100.0 40 .......................... TAATTTGAAGACTGGGCTTTTCTTGATGATATAAGAGCAT 305517 26 100.0 40 .......................... TAATATTCTTAACTTTTAAACTCAACTTAGAAGGCGTGAT 305583 26 100.0 41 .......................... TAATGATGAAGCAATTAATCATATAAATACTTACGGTTCAC 305650 26 100.0 41 .......................... TAATGATTGTTCGGTCTCTATTTTTTCTACATAGCCCTTTA 305717 26 100.0 39 .......................... TAATCCGACCTGGATTTAAAATATATGACCGTTTCTGAT 305782 26 100.0 40 .......................... TAATGACTGTACAAAGTAGCCTTTTCCGGTTGGCGTGTAC 305848 26 100.0 39 .......................... TAATTTAAAAGACAGAGTAGATGTGATTGTAAAAATTGT 305913 26 100.0 39 .......................... TAATAATTCTAAAGATAATAAAACAATTTCTGTTACAGT 305978 26 100.0 41 .......................... TAATTGCATGTGCTTCATCTTTTGACTTGTTCTCTGCCTGA 306045 26 100.0 39 .......................... TAATAAAAAACAATTTTGTTAAATTCTTTGTAAAAACAC 306110 26 100.0 43 .......................... TAATCTGTACAGGCCTAATTCAGTTATGACTCCGTCAACTTTT 306179 26 100.0 39 .......................... TAATAATATTCGATTTGCCCAATTTGGCAATCTTACATT 306244 26 100.0 39 .......................... TAATGCATACTGATTTGAAACTACAGGAACTTGATTTAG 306309 26 100.0 40 .......................... TAATGATAATAGAGGTTCACAATTTTTATCCGGGTAACTA 306375 26 100.0 40 .......................... TAATGATCGTCAAGAAAAAGGATTCTTGCTCAGATACTTT 306441 26 100.0 42 .......................... TAATTGAGAGCAAAGGAGGAGATAAATGACAACTTATAATCA 306509 26 100.0 41 .......................... TAATGGCAGACTGGCAACAAATCACATTTTAAGTATTGATA 306576 26 100.0 43 .......................... TAATGTAAAGATACAAAAGAGAACTTTGTTGAACCTCTACCCC 306645 26 100.0 40 .......................... TAATGATAATTATAACCCGTTTGGAGTATCGCTTAGATTC 306711 26 100.0 40 .......................... TAATTTTGAGTACCGTCCTGCTTAGTAATAAGGTTATATC 306777 26 100.0 40 .......................... TAATTTTGCATAACCATCATAGGACTTAATCCCATACGGT 306843 26 100.0 39 .......................... TAATCTTGATCAGCGCTTCTGAGTTGATTCAGCAACAGC 306908 26 100.0 41 .......................... TAATGTAATGAGCATAAACAATTCTTGATTGCTACAAACAT 306975 26 100.0 40 .......................... TAATCAACACAATAGCAAATAAAGCCGTATCGCTTAAACA 307041 26 100.0 39 .......................... TAATCGAATTGAATTACATTGCAGAGCAGGGCGAATATC 307106 26 96.2 39 .C........................ TAATATTACTACAGAAGGATTTAAGCAAAAGACAGATAG 307171 26 100.0 39 .......................... TAATGAAGAGGGTTGAAGCTATATTGGCAGCACTGGAAA 307236 26 100.0 40 .......................... TAATCTGTATAACTCCTGACAGAGTAGAAAAACATCAAAA 307302 26 100.0 40 .......................... TAATTTATTCTTGCGCACCGTAGCGAACTTTTACAGCAAG 307368 26 100.0 41 .......................... TAATTAAGCTCAGGCTCTACAATATTATCTATATCTGAAAA 307435 25 96.2 0 .........................- - Deletion [307459] 307460 26 100.0 40 .......................... CAATTGTTCCTGTCACAATGCAGATAAGAAGTGGATGTGA 307526 26 100.0 40 .......................... CAATGACAGTAACTTTTCTTTTTTTATACGCATATAATTG 307592 26 100.0 40 .......................... CAATTAGATTGTAGGAGAGATTAGAGGGAAAGTAAATAGG 307658 26 100.0 39 .......................... CAATAAAGACCGGAAAGGGAAATAAGACCACAGGGTGGA 307723 26 100.0 39 .......................... CAATGATATGGCAAAGTTTAATTATATCAGTATTGACTA 307788 26 100.0 39 .......................... CAATCATATTCAGATACTGCAGCATTAAATGTATCAGCA 307853 26 100.0 40 .......................... CAATCTTTACCCCCATCTTTTGCAACTCTGCTGCAATCTC 307919 26 100.0 40 .......................... CAATAAAACTTGACAGCTCATCTATAACCACCGTATCAAA 307985 26 100.0 39 .......................... CAATCGTCCAAATCGGCTCCCTCAAAGCTTGCCTCAGTA 308050 26 100.0 39 .......................... CAATATAGATGGTACTGAATATAACATTACTAAACTTGA 308115 26 100.0 40 .......................... CAATTGCTTTATTGTTAAGCCTTTTAGCCGTAATTCCTTC 308181 26 100.0 40 .......................... CAATCACAGGTGAGTTGTTAAATCTTCCTACCCCTGATCA 308247 26 100.0 40 .......................... CAATAATAAGTACCGCTTTTAACGTCTACTGTTTTGCCTT 308313 26 100.0 39 .......................... CAATCAGGGGAAGAGCATAGAAGAAGGGTGGATACAGCA 308378 26 100.0 42 .......................... TAATGACCGCAAAGACATAGCAAAAAGCCTTGACGAAATGAA 308446 26 100.0 38 .......................... TAATTCTTTCAATCAGTGGCAAAATTTCCTTTGACTTA 308510 26 100.0 40 .......................... TAATGCTAAGAAGGTAATTTCATCTATCAGGCTATACATA 308576 26 100.0 41 .......................... TAATTAAACCCCTCAGCCCCTCCTACTCTTTATTAATTGAA 308643 26 100.0 42 .......................... TAATCGATGTATATGATGTAAATTCTTTGTATCCTTATATAA 308711 26 100.0 40 .......................... TAATTGACTTAGTAAAATTACTAGATGAATATTTTACGCT 308777 26 96.2 41 ....................G..... TAATGAATTCAGAATATGGGCCAGTATTTTTTAATAGATCA 308844 26 100.0 39 .......................... TAATTCGTTCGTCCATTAAAATCTCCTTTCTTTAACCTC 308909 26 100.0 39 .......................... TAATAATATTCGATTTGCCCAATTGGGCAATTTTATATT 308974 26 100.0 38 .......................... TAATGAAAAGGAAAAACAAACGGATTTGGGCGAAAGTA 309038 26 100.0 39 .......................... TAATCTATTCATACAAGATTTGAAGAGGGGTATTATCCC 309103 26 100.0 39 .......................... TAATAGGAACTTAATTGCGAAAAGTTCGCGGCAAGGGAA 309168 26 100.0 39 .......................... CAATGATACTTTTATTGATATTTGCTTTATCAAAGTATT 309233 26 100.0 40 .......................... CAATGTCGTCATCATAACATTTCAGTTTAATGCTTTCCGG 309299 26 100.0 41 .......................... CAATTGTGTTAAGCGTTGTCATAAACTCAATGTTATTTAAA 309366 26 100.0 39 .......................... CAATAAGTACTTGCAAAGACTTTAAACTGGTTTACACGA 309431 26 100.0 41 .......................... CAATAATGCAGCGCAAAATACAATCACCTCCAACAATTTGA 309498 26 100.0 40 .......................... CAATACGGGGTATAAAATTTTTATCATTGTTCACTTTTTC 309564 26 100.0 39 .......................... CAATTTATTAAAAAATGCTACGGGATTATAGGCGATTAT 309629 26 100.0 39 .......................... CAATGTATTTGGTGCAGTAGGTCCGATAATGACAACACT 309694 26 100.0 41 .......................... CAATTATATGGAAAAATCGAGGAAGAGATGAGGGTATCAAA 309761 26 100.0 41 .......................... CAATGCGAATATAGTATAATTATTTTTGCCGTTACTCTTAA 309828 26 100.0 40 .......................... CAATACATAGCCATATAGCAGGCAGATGGGCATTTATCGA 309894 26 100.0 39 .......................... CAATATTCTTGAATGCGTAAAAAGGAGGGTGCATGGTAG 309959 26 100.0 40 .......................... CAATTACAATTGGATATTATGCAATGTTTGAGTACACGAA 310025 26 100.0 39 .......................... CAATGTCCAAGGGTTAGTAGGTAATGTCTCTCCGGTATC 310090 26 100.0 40 .......................... CAATGCTTACAAAGGCCGAGCAGGACACAGCTGTAGGCGA 310156 26 100.0 42 .......................... CAATTTATGCATCATGTTCTGACTCTCTCTATCAGTACCGAA 310224 26 100.0 39 .......................... CAATTTATCATGTATAATTGCGTGAACATTGCTTACTGC 310289 26 100.0 39 .......................... CAATTCAGTTGGACAAGTTGGGGGATAAAGCTAAGAAGA 310354 26 100.0 42 .......................... CAATAAGATGTGAGCAGCTCTTTACCTGATTGGAGAAAGTAA 310422 26 100.0 39 .......................... CAATAGAAGTTTATCAAAACTTATGTTAAACAGCTTAAC 310487 26 100.0 39 .......................... CAATGAAGAAAATGCCTTTATTTTCAGACAAAACTTAAT 310552 26 100.0 40 .......................... CAATTATACCAGAGTTTAGGGGCGCAAGCCCCTTAAACTC 310618 26 100.0 39 .......................... CAATCTTACCGATACATCGTGTATCATAAGCATTCCGAT 310683 26 100.0 40 .......................... CAATGAATGACAAACGCTGATTTTCAATCACTGGATGTAT 310749 26 100.0 40 .......................... CAATGGGCAATGCTCCCGATTATAGTTTTGTCTATGCTCC 310815 26 100.0 41 .......................... CAATGACGACTGTATCGCTTATAGTCGATAAGAAGTTGAAA 310882 26 100.0 38 .......................... CAATAGATACATAACCGGACTGAAATTCGGGGAGATAT 310946 26 100.0 39 .......................... CAATGTTCTTACATTTTGCACCCAAACAATTTACAAGAT 311011 26 100.0 40 .......................... CAATAAATACATGGAGAAGAATAAGGATTACACAGTTAGA 311077 26 100.0 41 .......................... CAATGAAGAGTCGGAAATGACTTCAGAGCAAGAACAGGCAT 311144 26 100.0 40 .......................... CAATTATAGTGTTTAGTGCTTACCCTCATATGGATATAAC 311210 26 100.0 41 .......................... CAATGAAGTCGATAAGACGCTAAGGCTTGTAAGTGAAACCA 311277 26 100.0 39 .......................... CAATTCAAGTCCTCTAATAACATTAAACACTTTACTTAA 311342 26 100.0 40 .......................... CAATTGATTACAGAACCGCAAGGGGAATTAAGTAGCTATC 311408 26 100.0 39 .......................... CAATAACACCCCTTCTTTCCATTCCTTTTGTTTAGCTTC 311473 26 100.0 41 .......................... CAATAGATGGGAAAAAATATTAAAGATATCAAGCAAGGATA 311540 26 100.0 41 .......................... CAATTATATTCTTTTAAAAAGTCAAAAAGATATCCAGGCAT 311607 26 100.0 40 .......................... CAATAGTAAAGTTTGCAGGCACGATGCCCGATTATTCTAC 311673 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================================== ================== 138 26 99.3 40 CTTTACATTCCATTCTGGTTATATTC # Left flank : AGCGTAGTACGAATACCCTGTATTGTCATTTCAGTGATAGAGACATTTTTAAGCTCTACCTCTTCTCTTTTTGTAAGCTTTGCAAGATAAGAATCACAGGATATAAACTCGGCTCCTGTTGCCTCTATCTTACTTTTAAATTCATTAAATGAATAAAACCTGACTGTATTTCCTCGATTAACAAGCTTTGCTGCAACAGGAAGCATCGGATTTGTGTGACCATGTGCAGGAATACAGAAAAAAGCTATTCTTTTCAATCAACATCACCTTCCTTTTCATAATAATTTATACATCTATCTTCCACATATAATACATACTTCTACAAGATTCCGGTTCTAAATCAGGAAAATCTTTTACTAAGACTCCCAAGATTACATTCCCTTCTAAAATCACTTATAATCTCCTTTCAAAATATTTTTATAGATATTTAAAACTATTAATAATTTTATATTTCATAGCACCATTAACAGACATCTATAAACTTGCTACATATCATTGTA # Right flank : CCAATCCGTCTCCTATCATACCACCTATTTGCGCCATTTAAAACCCTCTTTTTTGTCTACCTCGATTTTTTCTGCCGGCAAAGTATGATTTTCTTGTAATTATACTGTCTATGTACTGCTCTAAACCTTTGTTTTATAACATTTGTCGATTCCCCTATATTTTTGGGCTATTATAGGTCGACAATTGTATTGATATGATAAGCAGCATTGATATCAAATCATAAACGGATCATCCTGCTGCAATCCTATTACATTTTTATCAAGCCACCTCTCATTTCTGCTCTTAAATATTATTACCGAGTCGGTACTTTTATCTATCTCCTTTTCGATTGATCCTTCAAGCTTAAACAAGTCTGAGTCTGAGATTTCTCCTTCAAATACAGATTTTTGAATATGCACAAGGTTTTGCTTACACAGTTTAAACACCCTATTCCATCTTTTTTGTCCATTACCCTCTTTACATATATCGTATACAAGTATCACATACATAATTACCACCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTCCATTCTGGTTATATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //