Array 1 109371-107877 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHV01000031.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035321 SEEM5321_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109370 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 109309 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 109248 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 109187 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 109126 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 109065 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 109004 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 108943 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 108882 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 108821 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 108760 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 108699 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 108638 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 108577 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 108516 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 108455 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 108394 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 108333 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 108272 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 108211 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 108150 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 108089 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 108028 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 107967 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 107906 29 93.1 0 A...........T................ | A [107879] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126572-125506 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHV01000031.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035321 SEEM5321_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126571 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 126510 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 126449 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 126388 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 126327 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 126266 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 126205 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 126144 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 126083 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 126021 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 125960 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 125899 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 125838 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 125777 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 125716 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 125655 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 125594 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 125533 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //