Array 1 795430-794546 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAB01000001.1 Streptomyces harbinensis strain CGMCC 4.7047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 795429 29 96.6 32 ............................C TGACCACCCGTGCGCCAGCTGGCTTCCGGTAA 795368 29 100.0 32 ............................. AGCTGGTGTACGGGCGCGACGCTGCGGCGGCA 795307 29 100.0 32 ............................. GCGGACCCGCCGAAGCGCGGGACGCCGGTCAG 795246 29 96.6 32 ............................C TGACCACCCGTGCGTCTGCTGTCTTCCGTTAA 795185 29 100.0 32 ............................. AACTGCCGCCCGGTGTCGCCGACCTGACTGCC 795124 29 96.6 32 ............................C TGAGCGCCGTCCGCCATGGACGCGCTGGTGGT 795063 29 100.0 32 ............................. GCCCTGTCGTGGCGCGGCCCCGGCGGCCGGAT 795002 29 96.6 32 ............................C GCGCCCGGATCGTGGCGGTGCAGGTACAGGCC 794941 29 100.0 32 ............................. GCCCTGTCGTGGCGCGGCCCCGGCGGCCGGAT 794880 29 96.6 32 ............................C GCGCCCGGATCGTGGCGGTGCAGGTACAGGCC 794819 29 100.0 32 ............................. ACCGACGCCGGATTCCGTGCCTCGTCTCAGGT 794758 29 93.1 32 .....................G......T ACGCGACGGTCACCGGCCGACGCTGGCGGGGT 794697 29 96.6 32 ............................T TGCGCGGCCTGCCCGGACATCACCATCTGTCT 794636 29 100.0 32 ............................. ACGCGCGGCGTGCGCGGCTTCGCCGACGCCCT 794575 29 86.2 0 ..............T......G..A...C | G [794553] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.3 32 GTCGGCCCCGCGCCCGCGGGGATGTTCCG # Left flank : CGTCCGGTGTGAACTGGGCGGACGACCGGGACAGCCCCGCGGAGGCGGCGTTCCCCGGGCCGGAAACCGCCTCCCGCCCGGCCTCCATGGGCGACCAGCACATCGCCGTCATCGGCCCCGAGTTCGAGGAACCCGACAGCGACCCGAGGACGTCCGGATGACCGTTATCGTGCTCATCGCCGCCCCGGAAGGACTGCGTGGCCACCTCACACGCTGGATGGTGGAGGTCAACGCGGGCGTCTTCGTCGGCAACCCGAACCGCCGGGTCCGGGACCGTCTGTGGGACCTCCTGACCACGCGCATCGGCGACGGCCAGGCCGTGCTCGTGGAACCCGCGGCCAACGAACAGGGCTGGGCCGTCCGCACCGCCGGCCGCGACCGCTGGCGTCCGGTGGACTTCGACGGTCTGATCCTCTCGGCACGGAACAGGAGGTGAGCCAGTGCCGACGCAACTGAATGAAAACGGAGCCCTGGCACGATAAAACCCCAGCTCAAAAAGG # Right flank : TGTGTGCAGCCAACAGCCGCACTCAGCACGACGCGCGCAACCGGCATACCTCACTGGGGACTTCCGTCTGAAGTAAGTCGTCTAGGCACCCCTGACACACAGACGCCCCCGCCCCCGCTTAGCAGCGGGCGGGCAGGGGCGCGGCGGCGTCCATGCCGTCAGATGTCGCGGAAGGTTTCGATCTGGGCGCCCACCGAGTTCAGGCGTTCGGCCAGGTCCTCGTAGCCGCGGTTGATCACGTACACGTTGCGCAGCACCGACGTGCCCTCGGCCGCCATCATGGCCAGGAGGACGACCACCGCCGGGCGCAGGGCCGGGGGGCACATCATCTCGGCGGCGCGCCAGCGGGTGGTGCCTTCGACCAGGACGCGGTGCGGGTCCAGGAGTTGGAGGCGTCCGCCGAGGCGGTTGAGGTCGGTGAGGTAGATGGCGCGGTTGTCGTAGACCCAGTCGTGGATCAGGGTCGAGCCGTGGGCCGAGGCCGCGATCGCCGCGAAGAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 807142-807961 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAB01000001.1 Streptomyces harbinensis strain CGMCC 4.7047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 807142 28 100.0 33 ............................ GACATCCCCGCCGACCGGCCCCTGCCTGCCGGC 807203 28 100.0 33 ............................ CGGCGGCACCCCGATCTGCTCCACACACCGGGC 807264 28 100.0 34 ............................ CCGCTCTGTGCCTGTTGGTGCTGTCGGCGCTGGC 807326 28 100.0 33 ............................ GTGGACGTCCGAGATGTTGCGCACGCCGGAGGG 807387 28 96.4 33 .......................A.... CGCGCTCTCCGAGCTGCGCTCGGCGGGCCGCAT 807448 28 96.4 33 .....................A...... CTCGGGCCGGGCGCACGTCTACGCAACGGCGCG 807509 28 96.4 33 .....................A...... CAGCCGATCGCGGGTGTCCACCCGCACAACGGT A [807528] 807571 28 96.4 27 .................A.......... ACGGGTGCGGTCCTCTCCGGGCGGGGC 807626 28 96.4 33 .......G.................... TCCGTGGTGGCCGCCGTGGTGGTGATGGTTGCG GT,G [807632,807635] 807690 28 96.4 33 ........T................... CCGGGACGCGACCATCGCGTGGCTGACGGCGAT 807751 28 96.4 33 ...A........................ GCTGATCTCCCTGGTCACCCTGGCCCGTGCCGC 807812 28 96.4 33 .................A.......... CGTCGCCGTGCACGAGGACGTCGTCGGCCGTCT 807873 28 92.9 33 ...........G.........A...... CGACCAACGCGCGACGCAGGTTCAGATGAACGT 807934 27 89.3 0 ......................-.CA.. | A [807955] ========== ====== ====== ====== ============================ ================================== ================== 14 28 96.7 33 GTCGGCCCCGCACCTGCGGGGGTGTTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCGAT # Right flank : CTCGGCGCAGGCGAGGGATCGGGGCCGGCCCGCCGGTGTAGATCAGCGGTGTGCTGCGAAGTGGACGAAGGGAGCCCAGGCTTCTTGGCTGACTGTGAAGTGCGGGCGAGCGCTGTCCTTGGAGTCCCTGACGTGGATGGCCTGGTCGGCGATCGCGACTTCTACGCAGCTGTCGCCCTGGCTGCCGCTGTAGGTGGACTTGAACCAGGCGAGTTCCGTACCACCGCTCATAGCTCTCCTCGCAGTCGTTCCAGCAGGTCCCGGGATGCGTTGGGGCTCAGGGCCTGCGAGCGCAGTGTTTCATAGCGCTGGCAGAGCAGACTCATCTCTTTTGCGTCGGAGATGAGACGTCCGTTTTCCTGTCCCTCTGAGTAGCCGAGTCGGCGGCCTTCCGGGGTTTCCAGAACCTGCAACGGTCCGTCCAGGCACGCGTGGAGGGCTCCGTCGAGCGGCACCAACTGGAGGCTCACGTTGCGCGGGGCGCTGCGTTCCAGCACGTG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCTGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 133421-134107 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAB01000003.1 Streptomyces harbinensis strain CGMCC 4.7047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 133421 37 91.9 36 TT.A................................. GGTGCCCTGGGTGGCCAGCAGCGTGGTGAACGGGGC 133494 37 100.0 34 ..................................... GGCTGGTGTCTCGGTGATGACGGGGCAGCTGGTC 133565 37 100.0 34 ..................................... CGGTGACTCCGGCCCTGGCGAGGAGGGCCTTGAG 133636 37 100.0 34 ..................................... GGCTGGTGTCTCGGTGATGACGGGGCAGCTGGTC 133707 37 100.0 35 ..................................... CCGATCATGCAGACCGCGCAGGACACCGGGTTCTC 133779 37 100.0 35 ..................................... ACCAAGTCCAGCGGGTGTGCTCTCCCCGCCGGGGT 133851 37 100.0 37 ..................................... CTGTGGTTCACGGGGACCGTCAATCAGTGACCGTCCC 133925 37 100.0 35 ..................................... CTGTACGGCGAGATCGGCCTGGAGTACGGCAACGA 133997 37 100.0 37 ..................................... CCCGACAAGATGCCCCGGGCCCCACGTCGACTACACC 134071 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.2 35 GCCGCAATGGTGCCGCGGTCGGAGACCGCGGAGACAC # Left flank : CGAGGGTGACCGCCACCAGATAGCGCCACGATTGCTGCACCGAGCGGTGCACGGTGCCCTGGATGGACACGGGGCGACAGCAGCCAGGGGGCCAGCGACCAAGCGATGACGGCGGCGGCCACGGTCTTCAGCTGGAGCAGCAGATCCCCCCCGCTGCCAGCCGGACCCGCGCACCGCCTCCCGCACCCGGTCGCACAGCACCGCCCCACGCACCACCACCGCACGGACGGGCCCGGACCCGTCCTTTCCCGTACGCCACCTCACGGCAACGTCGTCTGCCCCCACACGACAGCCGACAAACCTGGACAGGCCGGCCCAACCTGGCCCCGGGCGGCCGATGCGCCGGCGACCCGGGCGGACCGCCGTGGGCTCCGCCCTCGCCTCGTCGGTGAAGCAGCGGACCGAAACCCCACCCCGGCGTGTACGCCGGGGACCTTTCACGCATCGGGGCGTCCCGACTAGCAGGGGGCTCTTGGCGACAACACCAAGTCCGTCTTCGG # Right flank : CCCCGTCTGAACTGGGGTGATGGCTGTGTGTGACGGAGGAATCGGCACCTTCGGCGGACTAATTCGTATCAAGCCAGACTTTTTGCTTCGGTGCGATGCGGCTTTTCCGGGTGTGCTTGGGGTTCCGAAGTAGTGGGCGGCCAGGTGCGTTGGGCGGTGGCGAGGGGGCCCGCTGAGCTGTTGAGGCGGGTGCGGTGGGTGGTGTAGATGGCGCTGATACCGAGGTTGGTGAGGCGGGGGGTGTTGCGCGGGTGGGCGTGGATGAGGGGGTGTTCGAGGAGCGTCGTGATCGCCGTGCTGGTGAGTGCCGGGCGCCAGATGGGCCAGGTGAAGGTGGTGGTGCGGTGCCATCCGGTGGTGCGTGGGCGCCGGCCGTTGCCGGTGAGGCGGTAGTGAGCGAAGGCGTGGAGTGCCAGCCAGGTGGCGCCGGGAACGCCGTGCTGGGTCGGTTTGCCGTCGGCCTGGGTGGCGGCGAGGCGGGTGGAGTGGTGGTCGAGGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGTGCCGCGGTCGGAGACCGCGGAGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 433187-433459 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAB01000005.1 Streptomyces harbinensis strain CGMCC 4.7047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 433187 28 100.0 33 ............................ CGGAGGCCGGGGGTCCGGCCGGCCCTGCGGGAG 433248 28 100.0 33 ............................ CTGCAGGCTGCGCGTCATCACGATGTTCAGCCG 433309 28 100.0 33 ............................ GTACAGCCCCGCACAGGAGCGGGCCATGGTCGC 433370 28 92.9 33 ....C..............A........ CGCGACCTGGACGTCTCCGCGGCCATCCACGCG 433431 28 92.9 0 .............A...........C.. | T [433455] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.2 33 CTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : CGAGGTACGCACCTCACCCCTGTCGCGGGCGAAGGAAACCTGCGAGCTGGCCGGATTCGGCGACCGGGCGAGCGACTGGGACGCGCTGAAGGAGTGGGACTACGGCGACGCCGAGGGCCGCACCGGCGAGCAGATGCAGCAGGACCGGGGCGGCGAGTGGGTGCTGTGGCGCGACGGCGTACGCGGCGGCGAAAGCTTCGCGGAGCTGTCGGCACGCGCGGACGAGGTGGTGGCCTGGGCCCGCGAGGCGGAAAACGGGGCGGTGCTGTTCGCCCACGGCCACATCCTCCGCTCGGTGACGGCCCGCTGGCTGGGCGAGGACGTCCGCTTCGCCGCCCGCCTGAAACTGGACCCGGCCTCACTGTCGGAACTGAGCTGGGCCCACGGCAAGCCGGTGATCGCGCGCTGGAACGACACGGCACACCTGGAGGGGCGGACGGGCGCTGAGTAAAGTGAGTAAAGACGGCCTGACCGAGGGATAACGGCCCAGGTCAGAAAGC # Right flank : CATCGGCTTCACGCCGCAACTGCGCCCCGCCCGGCAGGGCTACGCCGCTCGCGCCGCGAACGCCGCGACCTCCGGAGCGTGGGTGTGCGCGGTCAGGCGGTTCGCCGTGTGGCGGAGGAGGGTGCGGATGCGGGAGGAGTGGACCTCTTCCAGGAGGTCCAGGGCCTGCTGGCCCGTCTCCGCCGCTTCTTCCGGGTGGCCGCCTGCCCGCAGGTGGTCGGCGAGTTCGGCGGTGTACAGGGCGCGGTTGCGGACCAGGTGCGGGTCCTGGGTGGTGAGGGCGCGGCGGGCCGCTTCGGAGGCGCGGTGCCAGTCGCCGAGCGCCGCCCAGCAGTGCGCTTCCTGGCTGGCGAGTTCGGCGGCGTTGAAGAAGCTCATCCAGTCCGGGTCGGCGTCGTCCGGGCCGTGGGCGAAGGCCGTCTGGGCGCGGGAGAGGGCCAGTTCGCAGCCCTTGCGGTCGCCGAGGCCGGCCCAGCCGGCGGCCTCGCGCAGGGCGAGCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //