Array 1 8932-9736 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIC01000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 3160 3160_47_length_37654_cov_21.3256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8932 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8993 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9054 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9115 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9176 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9238 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 9299 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [9341] 9341 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9402 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9463 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9524 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9585 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9646 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9707 29 96.6 0 A............................ | A [9733] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9325-7161 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIC01000080.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 3160 3160_80_length_14744_cov_20.6312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9324 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 9263 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 9202 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 9141 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 9080 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 9019 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 8958 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 8897 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8836 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 8775 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 8714 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8653 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8592 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8531 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8470 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8409 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8348 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8287 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8226 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8165 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8104 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8043 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7982 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7921 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7860 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7799 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7738 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7676 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7615 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7554 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7493 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7432 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7371 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7310 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7249 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7188 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //