Array 1 10494-11925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000027.1 Nocardia farcinica strain BJ06-0060 NODE_27_length_15175_cov_48.517212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10494 29 93.1 32 .......G..............C...... AAGAAATATCGAGTCGCCCTGTACTCGACCAT 10555 29 100.0 32 ............................. CGGTTGCGCGCCATGCAGAAGGGCGACGTGGT 10616 29 96.6 32 ............................A CCACCTGCGCCTGCTTGACCTCGACGCCGTGG 10677 29 100.0 32 ............................. CCCGGACCCGCCGAAGGCCATACCGATACCCG 10738 29 96.6 32 ......A...................... GGGACTTTACTGGTTTCGCTTTCGATCCCCGT 10799 29 100.0 32 ............................. GGTCGATCGGGGGTGGGTGGGGGTGCTGGTGA 10860 29 100.0 32 ............................. GGCAACGGCACCGGCGAGAACTTCACCGGCAT 10921 29 100.0 32 ............................. CGCCGCAGCCTCCATACGGCAAGCCGCCCCAG 10982 29 100.0 32 ............................. CCATCGGCAGGGTCGCAGCCCTCGCAGTCAGG 11043 29 100.0 32 ............................. CCCCACCGGTCGGACTCGAGCGCTTCGGGGTG 11104 29 100.0 32 ............................. CCGAGCGCCCGCAGGACAGCGAGGTAAAACGG 11165 29 100.0 32 ............................. GCACACCCCTCCACCTCGAGGTCCGGGTGCAG 11226 29 100.0 32 ............................. GAATCGGCACGGTCGGGGTGGTCGAAGGTCAG 11287 29 100.0 32 ............................. CAGATCGAGGTCGGGTCGATGGGCAGCGCCGC 11348 29 100.0 32 ............................. GACCGGATGGCCTTGAACGCCGCGTCCTCGCA 11409 29 96.6 32 ............................A CAGGGTCTAGGTACAGCTGGCGTACTGCCTCC 11470 29 100.0 32 ............................. TCGCTGGCCGCGTGGTGCCCGCGCTGGTGGGA 11531 29 96.6 32 ..............A.............. ACCTTCCAGCGCCTGGAGAAGGGAGAGCGCAC 11592 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 11653 29 100.0 32 ............................. AGTGTGGTCGTGCAGCCTGCCGGACCAGCGGG 11714 29 100.0 32 ............................. CGCGTCGTGCTCGGCGGCTACAGCCAGGGCGC 11775 29 100.0 32 ............................. GGGTAGACGCCGTCGGCGTCGAGATCGATGTC 11836 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 11897 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AAATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGAGGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACAGCAGGTCAGGAAGT # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCCCCGACGAGGCATTGAGCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATCCGCTAGCCGCCGCCACTGGCCAGCGTGCTCAACTGCGCCCCTAATTGGCCAGTCCGGGGTTCGCATAGCCGACCTCGTACGCGCGATCGAGGAAAATGGCGACTTTGGAGGACAAGCACGCGATCAGCGCGATCGCCTCGCCTCAGTTGGACTGATGCGGGTGGGCCCGAACACTTCTCAGGCCGCACTTCGCCCGGTATGGGAGAGGCCGATCGCCTCTGCCAACGGCACGGTGGCCGCCATCGGGCACGACCTGGAGCGTATCGACAGCGACCTCCAGGTCATCAGGAGCGATACCCCAGCCTTGCGACGACAGCTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169058-170307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000010.1 Nocardia farcinica strain BJ06-0060 NODE_10_length_282496_cov_53.988813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169058 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 169119 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 169180 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 169241 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 169302 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 169363 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 169424 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 169485 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 169546 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 169607 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 169668 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 169729 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 169790 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 169851 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 169913 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 169974 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 170035 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 170096 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 170157 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 170218 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 170279 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 341-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000044.1 Nocardia farcinica strain BJ06-0060 NODE_45_length_348_cov_0.723982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 340 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 279 28 100.0 33 ............................ CCACCCCCAGGTGCCCGGCCCGCGGGTCGACCA 218 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 157 28 100.0 33 ............................ CCGCCATCGAATATGGTGATTTACTGCGACCCA 96 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 35 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGCAGC # Right flank : CGTGCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1414-173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000014.1 Nocardia farcinica strain BJ06-0060 NODE_14_length_187205_cov_51.441832, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1413 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 1352 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 1291 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 1230 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 1169 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 1108 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 1047 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 986 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 925 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 864 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 803 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 742 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 681 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 620 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 559 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 498 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 437 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 376 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 315 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 254 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [201] 200 27 85.7 0 ........A.T....A....-....... | A [191] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4355-3656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000014.1 Nocardia farcinica strain BJ06-0060 NODE_14_length_187205_cov_51.441832, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4354 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 4293 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 4232 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 4171 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 4110 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 4049 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 3988 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 3927 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 3866 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 3805 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 3744 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 3683 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28-300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000053.1 Nocardia farcinica strain BJ06-0060 NODE_54_length_307_cov_0.438889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28 28 100.0 33 ............................ CGAGAAGGCCGAGGATCGCTCCACCGAAACCGA 89 28 100.0 34 ............................ CGCTGTCGACGCCGTGCTCGCCGCGATCGGTCAG 151 28 100.0 33 ............................ CGCCCCCGACTACCAGCGCACCTCGGTCTACGG 212 28 85.7 33 ..............G.....TT.....A GTAGGGGTCGGCGGTGTTGTGTCCCCCCTTCAG 273 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.1 34 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : CGGTACTTCCGCAGGACCGGGGGTATTG # Right flank : CCGGACG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41-252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000072.1 Nocardia farcinica strain BJ06-0060 NODE_75_length_279_cov_1.315789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 102 29 100.0 32 ............................. AGGGTGGTCGTGCAGCCTGCCGGACCAGCGGG 163 29 100.0 32 ............................. CGCGTCGAGCGCGGCGGCTACAGCCCGGGCGC 224 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : ATGGTCCCGACCGGATGGCCTTGAACGCCGCGTCCTCGCAG # Right flank : GGGTAGACGCCGTCGGCGTCGAGATCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 258444-257196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000007.1 Nocardia farcinica strain BJ06-0060 NODE_7_length_386758_cov_49.859538, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 258443 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 258382 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 258321 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 258260 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 258199 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 258138 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 258077 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 258016 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 257955 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 257894 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 257833 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 257772 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 257711 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 257650 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 257589 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 257528 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 257467 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 257406 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 257345 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 257284 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 257223 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 375349-372165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000007.1 Nocardia farcinica strain BJ06-0060 NODE_7_length_386758_cov_49.859538, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 375348 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 375287 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 375226 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 375165 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 375104 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 375043 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 374982 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 374921 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 374859 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 374798 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 374737 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 374676 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 374615 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 374554 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 374493 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 374432 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 374371 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 374310 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 374249 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 374188 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 374127 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 374066 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 374005 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 373944 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 373883 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 373822 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 373761 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 373700 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 373639 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 373578 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 373518 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 373457 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 373396 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 373335 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 373274 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 373213 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 373152 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 373091 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 373030 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 372969 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 372908 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 372846 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 372785 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 372724 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 372663 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 372601 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 372540 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 372480 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 372419 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 372193 28 71.4 0 ...G..TG.....CG.TC..A....... | G [372166] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 386588-384533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPE010000007.1 Nocardia farcinica strain BJ06-0060 NODE_7_length_386758_cov_49.859538, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 386587 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 386526 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 386465 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 386404 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 386343 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 386282 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 386221 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 386160 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 386099 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 386038 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 385977 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 385916 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 385855 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 385794 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 385733 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 385672 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 385611 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 385550 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 385489 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 385428 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 385367 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 385306 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 385245 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 385184 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 385123 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 385062 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 385001 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 384940 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 384879 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 384818 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 384757 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 384697 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 384636 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 384560 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= =============================================== ================== 34 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGG # Right flank : GGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //