Array 1 31171-30932 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHF01000028.1 Lactiplantibacillus plantarum strain DS6_9 DS6_9_28_length_31170_cov_30.263989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 31170 37 100.0 29 ..................................... TACAGTGTCGCTCAACGTCTATCACTCCC 31104 37 100.0 29 ..................................... GTATGGAGTACAACAAGGAACAAGACACG 31038 37 100.0 29 ..................................... ATGCTGAGGAAACGAAGCATAGAACGTTT 30972 37 81.1 0 ...........CG.C..C.........T..C.....T | T,C,AA [30934,30937,30946] ========== ====== ====== ====== ===================================== ============================= ================== 4 37 95.3 29 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACG # Left flank : | # Right flank : AAAAAATGGCTCACCAACTAAAACAGGTTGGTGAGCCATTTCTATTTATTGACTAATTACTAATCAATCACGCCATCTTTTCCCATCCATCGGAACCGAATAAACTTCCCGACCTCGGTCACAATCAAGACGACGATCCCACAGATAATCGGGATGCCCCAACCATACCAGAAGTTGATGCTAGTCGTATGGAAGACGGATTGCATGAATGGTAGGTAGATGATTCCTAGTTGTAAGAGAATCAGGATACCAATGATGTAGAACGCCATCTTATTTTGGAAGAAGTACTTGGAAATGACGGGGTGGTCATTCCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATGGTACTACCGACGACATTTGGTAATCCAAGTGCGGTCAAGTAGTTGTAGGCGAAGATCCCCAATCCAGAAATTAGGAAGGAGACATAGCCGATTTCAAAATAATCTAATTTTGACAACAACCCAGACTTAACATT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1-301 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHF01000033.1 Lactiplantibacillus plantarum strain DS6_9 DS6_9_33_length_19804_cov_30.065254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1 37 100.0 29 ..................................... TCGACACGGTAAGACCGTTAACGGTGTTT 67 37 100.0 29 ..................................... GCCAATGAATGACTACGCTAAAGACGTTT 133 37 100.0 29 ..................................... TCAATAACTGGGCGTCAGCATTAATTCGA 199 37 100.0 29 ..................................... ACTGAGGCAACCCCAGCAGGAGTCTGTTG 265 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 GTTCTAAACCTGTTTGATATGACTACTATTCAAGACA # Left flank : | # Right flank : CAGCATTTTAACATCATTTACTCATTAATTCATATCACGCCAGTCTACTAAATCCTCGTCAACATAATAATAACAACTATTTTTGAACTTTTCCATTCGATTTATTTCTGAGTATTCGATAACAATGACAGTTGCGCCCAAATCATGCACTAGTTGCTCAAAGCTCGCCCATTGTTTTTGATTTAAGTAATGGCTGACATTAGTCAACACCAGCTTCTGTTTCAAACCCAGTTCAACATGCGTCTGAACGAGTGCCTCCAGTATTGCCCTTGGGTCATTCATAAGCTCCGTTGGAAAATGAACACCGGTAAATTTCAATATTTGTTCTAGGCTAGGCGATTCGTCAACATCTAGCGGTAAGTCTAGTAAGAAGCTGGCTTCCATTACTTGCGAAACTACTTTACGATTTTCATCTAAGACCGCTACTTGCCGATCATCAGCCATTAACTTGATAATTTGGGTCTGCACTTTCTTTAGAAAAAGGCGGTTCAAATCGACTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAACCTGTTTGATATGACTACTATTCAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 26-391 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHF01000051.1 Lactiplantibacillus plantarum strain DS6_9 DS6_9_80_length_416_cov_38.262976, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... AAACACCGTTAACGGTCTTACCGTGTCGAT 92 36 100.0 30 .................................... ACGTCGGCGAAATCTTCACCACGCCGATTA 158 36 100.0 30 .................................... TTGATGACTCTTCTGGGGCACCAACAAGTT 224 36 100.0 30 .................................... TATTGAGTGCAGCGTTGTTTGCGAGCGTCC 290 36 100.0 30 .................................... GTACAGTGTCGCTCAACGTCTATCACTCCC 356 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : TCTTTAGCGTAGTCATTCATTGGCTG # Right flank : GGTATGGAGTACAACAAGGAACAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //