Array 1 49860-46832 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDI01000005.1 Capnocytophaga canis strain 17-158 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 49859 36 100.0 30 .................................... AATCAGCTTAAAAACGATGTTCAAAATCTT 49793 36 100.0 30 .................................... AAAGACAAGTTATTGAAAGACTTTTCAAGT 49727 36 97.2 30 ..................C................. GTAATTGCCGATGAATTCAAACACAAAGAT 49661 36 97.2 78 ..................C................. AAGATAGATTATTCACTAATAGCCTATGGAGTTGTGATTACCCTCCAAATGCTTTGCATTCATGAGTTCCTTTGAAAA 49547 36 72.2 30 ACAA.A.AA..T.CA..................... GTACAAGAATATTATAAGATATTAGATTTA TAAG [49528] 49477 36 100.0 30 .................................... TTTTCAATTTAGCAACTTCATTGCTCACGA 49411 36 100.0 30 .................................... GTCAGCGGAACGCTTAACAATATCAGTAAT 49345 36 100.0 30 .................................... GTCAGCGGAACGCTTAACAATATCAGTAAT 49279 36 100.0 30 .................................... TTGCTCGTGTTTTTGTGATTCAAAAAAATC 49213 36 100.0 30 .................................... CATCGCTTTATTTTCCGTGCCACTAATGAG 49147 36 100.0 30 .................................... TTTCTTATTTGAAAGATATAAATAAAAATA 49081 36 100.0 30 .................................... ATCAGTAAATATACGCTCTTTTTTATTCAT 49015 36 100.0 30 .................................... TAAAACTTGTTACGCTGAATTAGATAAATA 48949 36 100.0 30 .................................... ACTTTATCAAAGTTTCACAATAAAGCTGTT 48883 36 100.0 30 .................................... GCAAGAAACAACGTTCACTATTGAAGCCTT 48817 36 100.0 78 .................................... ACAAATTTCCCATTAGTATCAAGGGACTGCGTTGTGATTACCCTCCAAATGCTTTGCATTCATGAGTTCCTTTGAAAA 48703 36 72.2 30 ACAA.A.AA..T.CA..................... TAGTATAATATCAGCGTCTTCTGAAAGAGC TAAG [48684] 48633 36 100.0 30 .................................... ATCACCGGCACCGCCGGCTTGTGGCGCTTC 48567 36 100.0 30 .................................... TTATAGGCAATAGAATAGATAAATATTTCA 48501 36 100.0 30 .................................... ACAGAGACGCAACGCTTTAACTGAGATAGT 48435 36 100.0 30 .................................... AGCAGTTGCAAACGCAAATTGTGGAGGCAG 48369 36 100.0 30 .................................... TATCAAAACCCAACGATATGAAGCCTTATA 48303 36 100.0 30 .................................... TGAACTTTAAACTTTAAAAAAATGATTACT 48237 36 100.0 30 .................................... AATTAGAGTATTTTAATATGAACACAACTA 48171 36 100.0 14 .................................... CACACACACACACA Deletion [48122] 48121 36 100.0 30 .................................... GTCGCAATTTTCCGAGCATATGCAGGGAAG 48055 36 100.0 30 .................................... AAAAGCCCGACTTATATTTTTTAGTAACAT 47989 36 100.0 30 .................................... CAAGGGCTTCAATCAGAAGCGGATAACCCT 47923 36 100.0 30 .................................... TAAATGATTATGATATTTGTGATTTAGTTT 47857 36 100.0 30 .................................... GCACAGAAAATACCTACGAACAAGCTCGAG 47791 36 100.0 30 .................................... GCACAGAAAATACCTACGAACAAGCTCGAG 47725 36 100.0 30 .................................... TCAAAAGCAAAATTAAAAGGTTTAACCATA 47659 36 100.0 30 .................................... TTTGTAATGATATTAATGTTTATATTTTTA 47593 36 100.0 30 .................................... TGATGATGTTGTAGAATATGAAGTAAGGGA 47527 36 100.0 30 .................................... AATCTATAATGACTATAAACAAAGCTATCG 47461 36 100.0 30 .................................... ATTATTCGAAGCGGAGCAACATATACTACC 47395 36 100.0 30 .................................... TATTTTCGTACATATTAACATACACATTCC 47329 36 100.0 30 .................................... TCGGAATATTTACGAGCGTTGATAATATTA 47263 36 100.0 30 .................................... CTGATTCAAGACCCAACGGAAAAGCCCGTG 47197 36 97.2 30 .....T.............................. ATTGATGTTCATACCTTGAGTAAGCTCATC 47131 36 97.2 30 .....T.............................. TTGGCGAAGTTTGTTAAGGATTTCGTACGT 47065 36 97.2 30 .....T.............................. TTCCGAAGCTAATTAAACTTCCACATTTTG 46999 36 94.4 30 .....T....................T......... AAACAAATATCGCTTAATAAACCTGATTTT 46933 36 94.4 30 .....T....................T......... TACGAAATATTATTTAGGTCCTGATACACC 46867 36 94.4 0 .....T....................T......... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 45 36 98.1 32 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : TTCAAAAATATCGCATGATTTTTTTATTTCATCTTCATACTCTTCATATTTTTTCGCAGATTTATTGCTTTGAATTTTTATATTGATTCATAATTTAGATTTTAAAGCAAAAAAAATAATTTATATTTTTATTTAAAATGTTGATATTTAGTTGATTAGCAGTTAAAAATAGTTATTAATTTTCAAAGCTGTTATCCTAATAAATGTAACTCAAAAACATAATTTTGCAACACTTTTAAATCAAAAACAAAAAGATACAGAACCTCCCAATGAAGTACATCGGGAGGTTTTTGCATTCATGAGTTCCTTTAGAAAAACGAACGAAAATTTTACGAATAACATGAGAGTAACAGTGGCTATTGGCTGTTAGCTATTAGCTTATGATTGTGATTACCCTCCAAATACTCTGTATTCATGAGTTCTTTTGAAAAACAATAAAAACTCACGAATAAAATGAGAGCAGTTCCAACTTTTACGCTCATCTACAACGATGGTTCTAC # Right flank : TTCTCATCTAATAGAAAATGGAAGTGGTATGTTGTTATTACCCTCCAAATACTTCGTATTCATGAGTTCCTTTGAAAAAACAATAAAAACTCACGAATAAAATGAGAGCAGTTCCAACCTCAATGCTAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCATATATTTTACTTTATCAGTGCTTCTTTTTCCCTTTTAAATATCTCGGAAAAGTACTCGGCATAGGTTTTTTCTTTTTCTATTTTGCCGTATTTTTCTTGACAATAGTCCCAAAATTCTCTTTTAGGCAACTGATTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAAGCTTTTTGTTCTAAATCGGTTGCTTCTTGTTTTAGTTGGTTAATGTTCACACCTTCAGGTTCAGTATTTAAGTTGAATACCTTATAGCTCTCCACATCTTCATTTTTAAGTTGCTTTAAAAGTCCGTTGAGAATGTAGTATTTGAAATTTTGATTATC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 85661-91853 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSDI01000009.1 Capnocytophaga canis strain 17-158 9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 85661 46 100.0 30 .............................................. GATCTAATTTTCAAGGTATTCTTATGTGGG 85737 46 100.0 30 .............................................. CCGACTAAAATTGAATTAAATTGTAAGACA 85813 46 100.0 30 .............................................. ACCCCCGACCTTGTGGCTGTGGGGACAAGT 85889 46 100.0 30 .............................................. ATAGAAAACATATTATTGTCAGGAAACAAC 85965 46 100.0 30 .............................................. TTATAATTTCTTCTGTTGCCATTCGTATAT 86041 46 100.0 30 .............................................. AATGCTAAATAGCTTAAAAATACCCTACAA 86117 46 100.0 30 .............................................. ACGTACTGGTATCGGCTCATTACGGAATGG 86193 46 100.0 30 .............................................. ATTATGAATTTGAAGTAAATGGAGATGGTT 86269 46 100.0 30 .............................................. TAGTTTGGTTTCAATGGAAAGCGGTTTGAT 86345 46 100.0 30 .............................................. TTTATTTTCGCAAAATTAAAATATCATAAT 86421 46 100.0 30 .............................................. ACTGCCATTGTAAGTGATAAAATAGAAGCC 86497 46 100.0 30 .............................................. TAAAAAACACGACCTTACCAAAGGCATCTT 86573 46 100.0 30 .............................................. TATTTTCATTTTGTCTTCAACAGGTTTAAT 86649 46 100.0 30 .............................................. TCTTCGTACTCAACAGTGATATGCAGTGCT 86725 46 100.0 30 .............................................. TTAGACTTTGAAACAGCAAACAGAAATAGA 86801 46 100.0 30 .............................................. TAAAGATATATTATACTCTTGATAAGTATT 86877 46 100.0 30 .............................................. AAACCCTCCTTGGGTCTCCAAGAACTAATA 86953 46 100.0 30 .............................................. TCGTATAGCTTCAAATATTTTAAAATTCTG 87029 46 100.0 30 .............................................. TAAAAAATGTTATGACAGTGGAACTATCAC 87105 46 100.0 31 .............................................. TATCGTACAGCGGTGATCAATTACAATCATT 87182 46 100.0 30 .............................................. GGTTATTCTGATGGTGCATTTAAACCAAAT 87258 46 100.0 30 .............................................. TACTACAGAAGCATCTGATACTTGCGGTGG 87334 46 100.0 30 .............................................. GTAGAACCATCATTGTATATCAATGTAAAA 87410 46 100.0 30 .............................................. AAAGTTTAAAGGATAAAGGGCAAAGTCGTA 87486 46 97.8 30 ..................A........................... ATAGTTTTTTTGCTTATAATAAAAAAATAG 87562 46 100.0 30 .............................................. ATAGTTTTTTTGCTTATAATAAAAAAATAG 87638 46 100.0 30 .............................................. AATGACAACTATTTGGTTGCAGTTTACAAT 87714 46 100.0 30 .............................................. ACGAATAAGCCCAACTCCCTTTCTTTTCCA 87790 46 100.0 30 .............................................. GCGTGTTGATTAGCGTCGTGTTCGTTCTCA 87866 46 100.0 30 .............................................. AGCAATGCCGTTGAAAAGCGAATAATGGCA 87942 46 100.0 30 .............................................. ACCTCTGTTGCAGAACTTAAAACCTTGTTG 88018 46 100.0 30 .............................................. ATATTAAAATTTAACGAGTTCAACATCACA 88094 46 100.0 30 .............................................. TTAAATTTATAATTTGATTTAATTCAGTTA 88170 46 100.0 30 .............................................. GAGCAGACTTGGCGTACGTGTCGGGGTGTG 88246 46 100.0 29 .............................................. ATCATTTGACGGGACAAAGATAATGATAA 88321 46 100.0 30 .............................................. TAACCATTTCAACCTGTTGTCCTGCTCCTT 88397 46 100.0 30 .............................................. TCAAAGGGTTGCTGTGCCATTTCCACTAAA 88473 46 100.0 30 .............................................. TTATTTTACGTAAACCTATATTAAATGTTG 88549 46 100.0 30 .............................................. TCCACTCTTCAATAGCTTGAATTGGAGGCA 88625 46 100.0 30 .............................................. AACATTCAATACTGTATCAAATGACAATAG 88701 46 100.0 30 .............................................. ATTAAATATTAAATGACTTGGATTGTAATC 88777 46 100.0 30 .............................................. TTGTGAGTTGTTCACTATTTTTTTTATTAC 88853 46 100.0 29 .............................................. TGTTATTTTGTTTATAAAAGATTTGTAAA 88928 46 100.0 30 .............................................. TCGTTTATAGCAAGTAACGCTTTAGCTCTT 89004 46 100.0 30 .............................................. ACTATCAAAATAGGCTCATTGGCGGTTTTT 89080 46 100.0 30 .............................................. CAGGGAAAGATCCTCAAAAAAATAGGCGAT 89156 46 100.0 30 .............................................. AAGAAAAAAGAATATTAGATTTTATTTTTT 89232 46 100.0 31 .............................................. GTGAACGAAATATTTTTATATTTCATCACAA 89309 46 100.0 30 .............................................. ATCCACTCAATATTTTAGAAGTTTGATCTG 89385 46 100.0 30 .............................................. TACATTTTCCTTTTGGCTCATTCAAGGAGG 89461 46 100.0 30 .............................................. AAAACGTTCCACTTGGAACCTAAAATATTG 89537 46 100.0 30 .............................................. CCCGTGTTAGTGCTATTCAATGGCAACATC 89613 46 100.0 30 .............................................. ACAGAACTTTACAAGCAGAAAGAGGTTGTT 89689 46 100.0 30 .............................................. CTAATGTTTTCATTGCCCTTTATTTATCGC 89765 46 100.0 30 .............................................. TTGACAGAACCTTTGTCAGTCGATTAATAG 89841 46 100.0 30 .............................................. CAGGTAAAGGTTGTGAAGCGATAATTCCGA 89917 46 100.0 30 .............................................. GTATAGCTACTACCTTAAATTTTTTTCCAA 89993 46 100.0 30 .............................................. ATAAATCCCACTTTATAATACCGTAATCGC 90069 46 100.0 30 .............................................. ATCTCTGACGAACAAGCTAAAACGAGCGCA 90145 46 100.0 30 .............................................. AGGAACTAGTTACTTTAAAATATTGGTTGA 90221 46 100.0 30 .............................................. TAGCAAGTTATAAAACGCAAAATCTTACAT 90297 46 100.0 30 .............................................. AACGCTCTCAACAAACAAAAATTTCATTTC 90373 46 100.0 30 .............................................. GCTAAAATGCCACAAAGTCATTTAGAAAAT 90449 46 100.0 30 .............................................. AAAATACATCAAGTAATGATACTTTTCGAT 90525 46 97.8 30 ....................................G......... CGCCAGAATCTCTGTAGGTTACTTCAAACA 90601 46 100.0 30 .............................................. GACCCCAATTCCATTACGAAAGCGTCGAAA 90677 46 100.0 30 .............................................. AAATAGTAGCAATGCCACTGAGTGAGCTGG 90753 46 100.0 30 .............................................. ATTTCGGTTTGTTTTTTTGCGGTATTACTC 90829 46 100.0 30 .............................................. CGTCTTGTCGTAGCAAAGTAGAAAGCGGAC 90905 46 100.0 30 .............................................. ATGACTTATTATAATGAAAAGTTAGGAAAC 90981 46 93.5 18 ..........................................AC.A GCACAGAATAATAATAAT Deletion [91045] 91045 46 100.0 30 .............................................. AAAGTAGAAAAGTATAATTAATCAATACCT 91121 46 100.0 30 .............................................. GCTTTTTGTAAATGGGAGAATTTTGGTAAT 91197 46 100.0 30 .............................................. TCTCCCTATATTCTTCGGTTTTTTGACCTG 91273 46 100.0 30 .............................................. TCCAACATCCCTCTTTCAATTCCATTAAAC 91349 46 100.0 30 .............................................. GCTGAACCGACAGAGCAATCCTTATTATCG 91425 46 100.0 30 .............................................. CTATCCACTTGCCCTAAAAGTTTTAAAAAG 91501 46 100.0 30 .............................................. TTAACTTCCCATTCTTCAAGTTCTTCTTTC 91577 46 100.0 30 .............................................. AAATATTTCACATCACAGACACGGCACATT 91653 46 89.1 30 .......................G..AA.......C.A........ AAGTAAGCTACACCGCCCACAATCGCAATG A [91678] 91730 46 89.1 30 .......................G..AA.......C.A........ AGGTTTTACAACAACTTTTCGGTAAGTTTT A [91755] 91807 46 89.1 0 .......................G..AA.......A........T. | A [91832] ========== ====== ====== ====== ============================================== =============================== ================== 82 46 99.5 30 GTTGTAACTAATCACAAAGTTACAGATTTTGAAAGGATTTTACAAC # Left flank : AAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAATTTTCGATATATACGAGACACTGCCCTAGCCGCGAAAATGCCGAAGTACATATAAAAAGAGTAAAATCGTGTCTCCCTAAATACGGTAAAGTAGCAATTATGTGTATAACAGATAAGCAATTCGGAGAAATCGAATTATTTTATTCACAAGTCAAAGAGAAATTACCTCCCACATATCAGCAATTGGAACTGTTTTAGTAAGTAGATTAAGATAGCTTCTAAATTACGTGTAGTATCTGTATTTAAGACGTGTTGTACTGATTTATATTTTGTTTGTATACAAGGTAAATTCGGTATAGAAGGGCTTATTTATGTAAATCAAAAGGACAAAATAGGAATAAAAAAATGTAGAAAATATACAATTTTTAGATACTTTCCATGTGTTTTTTTAATTGAATAAAAAGGGGCAATCCTTTGATTTTTAGTAGATTGTCCCTTTTGAG # Right flank : CTGGCTATTAGCTAACCGTTGTAACTAATCACAAAGTTACAGACGATTTAATATGCCCGCTCTTTGTACGACTTCAAATAATGAAGGTTTAAAGTATCCATTACAAAAGATTTCAAGCAGTAAATTATGTCCTCGTCCTTTTTTTGACGTAAGATGTCGAGAAAGATAATAAAAACCATCCTCTTGCTTTTCGTATTTGATTTTTTTTAGCCAAAATCCTGAACGTGTTATGTATAGCCAATCTTGAAATTGGAAAGGTGCATAGCGACAGTCCCAATCAGGAGGATAACCTTGAAGTAATGTTCTGTACTCTATGCTGGAAAGACGAAAGTCGATGCATTCTTCTGCTTCCTAATGCACACTATCGGAATTTGGGTATTGGACTCCGTAGATGATTATATTATCGTGCTTATTCATTTTATAAAGAATTAAGGTTTTTATTTTCAACGTGTTAACTTTCGTGTTTTGGAATTTAGAACTAAGGTTTTGTTCGTTTGCTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACAGATTTTGAAAGGATTTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //