Array 1 4179-5602 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAQ01000021.1 Lacticaseibacillus plantarum EGD-AQ4 contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4179 36 100.0 30 .................................... CGAAGAGGCTAAAAGTGAGATCAACTGGCT 4245 36 100.0 30 .................................... GCAGCTGGAAGGCGTAAAACTGAAAGGCCT 4311 36 100.0 30 .................................... TGACGTAGCTGTTTTCGAGAATCAAACACC 4377 36 100.0 30 .................................... AAGCTGATATGCTTTACTTTTTGGATAAGT 4443 36 100.0 30 .................................... TGGCAGGTTGTGGACAGGCCAATCAAAATC 4509 36 100.0 30 .................................... GCTATTCTGCAAAAGATGGTTCGCATTAAC 4575 36 100.0 30 .................................... ACTCCAGACGATTGCATTCATGCCACGAAT 4641 36 100.0 30 .................................... CTAAACTTTTAAAAGGAGTGAAATCTATGC 4707 36 100.0 30 .................................... TGAGATGGTGGCGACAGCTAAAACCATGAC 4773 36 100.0 30 .................................... CCGGTTCGCGTTTGTCGCGACGGGTAAGTG 4839 36 100.0 30 .................................... ATGAGATCTCGTCGTGTTCTGCTCGAATCC 4905 36 97.2 30 ..................................T. CTGCCGTTTAGAACGAGTCATTGATAAATA 4971 36 100.0 30 .................................... TATCGAGTAATCGAACCCGACACTTGGGGT 5037 36 100.0 30 .................................... TGCCAGTCCGCTGGACGATGAACAATTGCG 5103 36 100.0 30 .................................... AGCTGACCCTGATAATGCCGAACTGTTCGA 5169 36 100.0 30 .................................... GGATATGCAGCAGTTACTTACCAAAAATGT 5235 36 100.0 30 .................................... TTAGAAGTAATAAATTACGCAAAAACTCAT 5301 36 100.0 30 .................................... CAACTTTGACATCTCCTACACCGTCTCGAG 5367 36 100.0 30 .................................... TGATGACCAAGTTGTTATTATGCCTTGGGG 5433 36 100.0 30 .................................... CGCGTTTGATATTTCTCAGACTGCCTTGAT 5499 36 100.0 30 .................................... AAAAAGGCCAGTTGAGTTTCCAGAGCCAGA 5565 36 80.6 0 ................GG.........AC....GTT | CA [5585] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.0 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTGCCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTGAGTCAGTCCTAAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGGCAATGACCGGACAATCATTATTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTTGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTAATGAATTGTTAAATTTTGATTAGAGATTAACG # Right flank : TAGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGCTTTTCACCACCGTCCACTAATCCACAACAATCTCCCGCACCCCACAAAACTCAATATCCTGCTGGTTACCAAACTGCCGCATGACCTCACCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTAATTACTCAGAGTAGTGAGTACTCGCGACTTAACTTCAGCGGCCGTTTCATAGTGCAGGGAGCTGTCTGTGACTCGTCGGCCATCATGCTGTCGATAAAGCTGATAGGCCACGCTGGCTTGTTCTTCAGTGTCAGTACGCAAACCGGTGTTATCAGGTTGCCACTCGCGCAATCCGAGCTCAACTTTTAATGGAATATTGTTAAACCGCACGATTTCAAGCGCCGTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 211041-209183 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAQ01000001.1 Lacticaseibacillus plantarum EGD-AQ4 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 211040 28 92.9 33 .....................CC..... CAATAACAAGCAACAATGGCGATTTGTACTTTC 210979 28 92.9 33 .....................CC..... TCCCAATTTTTTTTGTTGGTCATAATCAATGAC 210918 28 92.9 33 .....................CC..... TAAGTTTGCAATTATCGATTGCATAAGCGCTAG 210857 28 92.9 33 .....................CC..... CGTAATCAAATTCTCCGGTAATGCTACCGCCTT 210796 28 92.9 33 .....................CC..... TCAGGTCGGTTGAGTACGCCAAACCCCACGTAT 210735 28 92.9 33 .....................CC..... CGGCAGCCAGACAACGAGTTATTGCTTCAATTC 210674 28 92.9 33 .....................CC..... CGATTGAATTAACTTTCGTTTACTTTGCAAAAA 210613 28 92.9 33 .....................CC..... TCACTGATGGGTCCCCGTTTGACTCCCGCTTGA 210552 28 100.0 33 ............................ GTAACTGGTCCAAGTCGAATTAGTGTAATCAGT 210491 28 100.0 33 ............................ TTTTTCACGGCGCGAACCCTGATTACATTTGTA 210430 28 100.0 33 ............................ TATATCCTTCGTTATCATTGGGCCCTGTCGTAA 210369 28 100.0 33 ............................ TTACAACTACTTCCCATCGTGGGAAAACGTCGG 210308 28 100.0 33 ............................ CGACGGGTGCCGCTTCGATTTTCCCAAACTTTC 210247 28 100.0 33 ............................ TCTGACAGACGCGGTACGAGACGCGCTGGGAGC 210186 28 100.0 33 ............................ TGAGGGGCTGGTTGGTTATGGATTTAGATAAGA 210125 28 100.0 33 ............................ CAGTCAGTAAGAGTGAATTAACCACTACTTTGG 210064 28 96.4 33 .........T.................. CAAACACAGCAAGGAATATCAACGAGCGAAAAG 210003 28 100.0 33 ............................ TCAATTCGTACAGCAAACCTTGAAGGACAATCA 209942 28 100.0 33 ............................ TCAAATACTGTTAGATTCTTTTTCAATTTCAAT 209881 28 100.0 34 ............................ CCACATGCCAGACTTTACCAATGAGGAGCTATAC 209819 28 100.0 32 ............................ TGACTAACATTCATCTTGGTCAATAAATTGCT 209759 28 100.0 33 ............................ CGTTTTTACCTAATGATAATTCAAAAAGAAATA 209698 28 100.0 33 ............................ TATGGTTCGACATTTACAAAGGAACAGCTCGTC 209637 28 100.0 33 ............................ TTTGTCTTACCCGCGATTTTAAACGGAATGCCA 209576 28 100.0 33 ............................ CAGCGTCGCGTGAATCACGACCGCCCCCGTTTT 209515 28 100.0 33 ............................ TCGGTATACTGCCAAAGCTCATACGCGAAGCCA 209454 28 100.0 33 ............................ CAAGCTGACTACTAAGCCGGTTTATCTCTATAC 209393 28 100.0 33 ............................ CTACGATACGATCGGTAAAACAAGCATTCGGAG 209332 28 89.3 33 ..........T.C..A............ TCAAATCCATGAGTTGAACTTGCTCCGCTTCAT 209271 28 85.7 33 ..A.....T.T....A............ TGCTGAATGCTCTGCTCTGTTTAGATAAATTTT 209210 28 78.6 0 ..........T.C..A..A.......TT | ========== ====== ====== ====== ============================ ================================== ================== 31 28 96.6 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTGGCAAATTAAAAGCAGCTTTTTGCCTGCAAATTTAATGCATATTTAGAATTCACGTTTATTAAGCGCTTACAATTTGTTGTGAACATTGTGATAATTCTGAATTATACTGGCAAAAACTCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAACTCTCTCGACTTTTAAATATATCTCCCCTACATTAACATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTTGTTGGATTTTTGATAAATTGTGACGACTAGTTTGAGTCAAGCCAGTCTTATATGTCCAGTTTTGAAGTTTCCCCTATAGTTGCTTTCAATGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : CTGAACTCGATGGTTCCTCAACGACTGCCACGTTCTCTGCACATGTAGTATTCCACCCGAGCCGATATCATTGTTCAACACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTTTTAAATTAAGCAAGTGCCTCTTTAGCAGTGTCAACTAATGCCTTGAATGCATCTGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCCGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGCCGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 215396-213658 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAQ01000001.1 Lacticaseibacillus plantarum EGD-AQ4 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215395 29 100.0 32 ............................. GGACTATTTGAAGGACGCTTTGATTTGATCAG 215334 29 100.0 32 ............................. GACGAGCTGCAAATGGGATACACTAATTCCTT 215273 29 100.0 32 ............................. ATCACCATCAAAATGGATTGCCCAGCGCGCGA 215212 29 100.0 32 ............................. GCCTGAAATACCGGCCGCTAGTGGTGCAAAGG 215151 29 100.0 32 ............................. AAATTCATTCGTGTCAAGGAAGAAGTCAACAA 215090 29 100.0 32 ............................. TTCATGCGGTCCTCACTTGCGTTAAGTGTGTC 215029 29 96.6 32 ............................T AATCAGGTGGTAATGACAAGCCCTCATTATTC 214968 29 96.6 32 ............................T TTGAGCTTGCAAGGCCATGTAAACTCAACTCC 214907 29 100.0 32 ............................. AAGTCAGACTTACATGACACGGTTTACAAACA 214846 29 96.6 33 ............................T ATTTTGATTGAAAGCCGACGCCAAATCATTACC 214784 29 96.6 32 ............................T GTGCTTGGCAAGGATTTGCACCCTGCATGATG 214723 29 96.6 32 ............................T ATCCAACAAACAAATGACTATACACGAGCTTC 214662 29 100.0 32 ............................. GTAAGATGCAAAAGTATCGTTGATCTCAACTA 214601 29 96.6 32 ............................T TAGCTATTTGCATCATCTTTCTGTGGAAGAAG 214540 29 96.6 32 ............................T AGAAAAGCACTTGAATTGCTCAATAAGGATTT 214479 29 100.0 32 ............................. CGTAGCATGCTTAGCTCTTCAACGGTCAGCTC 214418 29 100.0 32 ............................. AAGTTGCGAGACAAGGGCCTTAAGTCCCATAA 214357 29 96.6 32 ............................G TTGCTCGTGGTTGGCGTACCCATCGATAGCCA 214296 29 96.6 32 ............................T GCTATTCAGAAGAATAATCGCAAGTCCTGGAA 214235 29 100.0 32 ............................. GTCAAAGGTTACTCTGCGTCCTTCAATCTGAC 214174 29 100.0 32 ............................. ACGGATTTTGCGACGTACGGCCGTGGATTCGG 214113 29 100.0 32 ............................. GATTTGGTCCCCATCAACACATCAATTGTTAC 214052 29 96.6 32 .....T....................... GAACTCAACCAGATTGCACTGGAAGAGTCCGC 213991 29 96.6 32 ............................T AATAGGGCCATCAAAGATGCTATAAAAGCATA 213930 29 100.0 32 ............................. ACGTACCAAAAGGCCCGCGGGAAGCTTGGTGA 213869 29 100.0 32 ............................. AAGTGCTGATATCCCCAATTTCTGGCGAGATG 213808 29 96.6 32 ............................T GAAGACTATCCCAGGGATGGAACGGTCGATCA 213747 29 93.1 32 .............G..............T CAGTAACCGATTGACATTCCTGTATTTGGAAC 213686 28 79.3 0 ............C..A......C-...TT | G [213661] ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : GATAAATATATAGGATGCCGGGTGCTTGTAATTCATTTCGCACAATTTTCCCCACAAAACTAGTGATGTGAAAACTATTCTCAAACGCTATACGACGTAAAATATTGGATTAGTCTGATGAGCTGGCATATCGCTATCTTTAGAATCAGGTAATACCGAACACTTTTCACAAATATTCGTTAGTTATTTATGACTACACACGCATGATCGGTAAGAATGGTCAATTTGAGGTGGGAATCCGTTGAAATAATTTTCTTGGAAATTAAGATATAGGTCAAACATTCACACCTACTTAAGCACAATCGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACCAATTTGTTACGTTCCATGCAGATATTCATCTTGCTTGAAATCCCGGTTTCTTGTATAGTCCTAATTATAGATATCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGCCGGGATTTGTTTAGT # Right flank : GTACCGATTCATTACACAATCAGCATTGCTATTGTCTCTAATATATACAGGACTATTTCAGCATTTATACAGAGCGATGAACAGCATTACTTCATCAACAGGACAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTGTGAATCCAGCTTCCATTACACAAATAGTGTATCTCTCAGAGGTGTGCTAAATTTTTAACTTTTCTACCTTACTTAATGCTTGAGCTAATGCCAACGTCGCCCGAGCATCCTCTAGCGCATGATGTGGTTTTGAATTCTCAATTTCGTATGCTGACAGTACTGTGGCTAGTCGATAGTTATCCAGAAACGCATTGGTACGTTTCACAATTGGCATTAAATCAATGGTTTGACTTCTTAACACTTCCAAATTATTGCTGATGAATGCTTGCTTTAAGAAGGCCTCATCGAAATGAAAATTATATCCCAAGATTGTACAATCACCTATGAAAGCATTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64468-62255 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAQ01000051.1 Lacticaseibacillus plantarum EGD-AQ4 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 64467 36 100.0 30 .................................... TTGTTCAATAGTCCACCATGCCGCTGCATA 64401 36 100.0 30 .................................... GCTCCAAAGGTCAAGGATATTTTTGGATAA 64335 36 100.0 30 .................................... GCGATTTGAAAAAATTCAGCCGGATGGCTT 64269 36 100.0 30 .................................... TAACCATGATCCGGACTCGTGCCAAAGGCG 64203 36 100.0 30 .................................... AGCATCTTTAACTTCTTTAGATACTTCGCC 64137 36 100.0 29 .................................... GCAATTATTCAAGAAAGGGCATCCATGAT 64072 36 100.0 30 .................................... TGGCTAGTGTAGACAATGGCGTATCCAATG 64006 36 100.0 30 .................................... CCGTATACCTGTTCAACGTCCAGTACTGCC 63940 36 100.0 30 .................................... TCCGGCAATGCCATGACTTCCGCCAAATCC 63874 36 100.0 30 .................................... AAGCAGCTGGTGACCACCTGGCTTGATGAC 63808 36 100.0 30 .................................... CGAACGTCATCAATAAGCGGTTAGTTATCT 63742 36 100.0 30 .................................... TTATGATTTATCCTCATTTATGATTGGCGG 63676 36 100.0 30 .................................... CTCAATGTTCTTGTCGATATACAACTCTGG 63610 36 100.0 30 .................................... ATTAGCTTTAGTTGCTAGTTGCACGATTGC 63544 36 100.0 30 .................................... AAAGTTACGCGGTCTTACATTACAACCGAC 63478 36 100.0 30 .................................... AGATAGTTTTAACGCTGACTTATATCAATC 63412 36 100.0 30 .................................... TCATTATTTCCGGCACTTGTTAAAGAAATA 63346 36 100.0 30 .................................... TACCATTATGACTATGATGGTGCAAGGTGT 63280 36 100.0 30 .................................... AAAGACTGGCTAAGATGTCAGCGGACGAAA 63214 36 100.0 30 .................................... CGTGGACACGCACAGCTATCCAGAATAGCT 63148 36 100.0 30 .................................... AAAATAGTTCGAATGGATATGGCCGACGTT 63082 36 100.0 30 .................................... CTTTGAACCATAACAACCAATCCTCGAACG 63016 36 100.0 30 .................................... CAAATGTGTCAGCTGATGGGTCTGCTGGGA 62950 36 100.0 30 .................................... TACCATTTCGACCAATTTAGCGCTCCCGTT 62884 36 100.0 30 .................................... TGAATTTGTGATAACGGTGCTATATATGTT 62818 36 100.0 30 .................................... TGCGCGAACCGGTCCTGTTCTAACTCTTCT 62752 36 100.0 30 .................................... TTATTAACTTGCACACCCTGAGCAATGCCT 62686 36 100.0 30 .................................... ATGGATTCGTATATATGCCGGTTCAATACT 62620 36 100.0 30 .................................... GCTAGCGATACAAGTAACATCTGCTTATCA 62554 36 100.0 30 .................................... AGCGCTCATCGCTGACGGGTTCGGCCTCGA 62488 36 100.0 30 .................................... CATGCAAGCTAAAGCATTGATGGAACGGCT 62422 36 100.0 30 .................................... ATGAAAGAAACGTAGTCAAGTCGAAAGCAT 62356 36 100.0 30 .................................... GTGCGCTGTCATGCGGCAGCGTCCACATCC 62290 36 94.4 0 ..........................A....G.... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.8 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTGAACCGCTTGTTTATGAAGAAGATACAGGCCCAGATTATTAAGTTAATGGCCGATGAACAACAAGTGGCCGTCTTAGATCAAAGCCGGGCTATGATTGCCAAAATAATGGAAGCAAGTTTCTTATTGGATCTGCCACTAGATGTAGAGGAAGCGCCGGGCCTAGAACAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCACTTGTTCAAACTCATGTTGAACTAGGACTCAAGCAATGCCCTGTGATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAATGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : AGGATCGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTCATTTTAAGTAGTTGTAGAATAACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTACCCCTCAACCCCAAGCACACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTAACCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTTACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCGAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 44667-43600 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAQ01000005.1 Lacticaseibacillus plantarum EGD-AQ4 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44666 29 100.0 33 ............................. CATGGATTAGTTGTGCCGTTCCAGAAATTACTA 44604 29 100.0 32 ............................. GATCGGTAAGCAGGACGCGTTTGTCTTTGTGG 44543 29 100.0 32 ............................. ATGTTGTCACCGCGAGCTTTAATTCAGGAACC 44482 29 100.0 32 ............................. GCCTGATAAAGTTATGAAGTTCATTACGCACC 44421 29 96.6 32 ............................T CAGAAAATTAACTGGTGCCGGATCTAGCGATT 44360 29 100.0 32 ............................. TGTGTATCGTTCATCGTCAACCGGTTCAGCTT 44299 29 96.6 32 ............................T AGCTATGGTTTGATTTGCTAAAAACCGACGTA 44238 29 100.0 32 ............................. TTGTGGTACCGTTACCGTAATGCGATGGTTGA 44177 29 96.6 32 ............................T AACCAAATTTTTTGCGAACATTAAGCTTAATT 44116 29 96.6 32 ............................T ATTCTAATTGAACCGTGTAAGTTAGACGAAAT 44055 29 100.0 32 ............................. AGTTTCTATAATCCGACGACTAAGAAATTCGA 43994 29 96.6 33 ............................T GCTGTGTGCCGTCAGTCATGTTCAAAGTTGTGA 43932 29 96.6 32 ............................T CACGGTGGGCGTGAAACCATCGATTTAATCCG 43871 29 100.0 32 ............................. GAGCAGAACATGGTTCAGCTACTAAGTGACGC 43810 29 96.6 32 ............................T GGCTCATAGCCTGCAAACACCTTGAGCACGCG 43749 29 96.6 32 ..G.......................... ATTTATAGGGGGCGTTGACAATCGAAAAAGTT 43688 28 86.2 32 ..G.........C.........-.....T ATGAAATCCCATGATTCTTAACTTTAATATCC 43628 29 82.8 0 ..G.......C......A...A......T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 96.8 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ACTGGAAGCGGCTAACCGCTTGCTACAACAAGTCGGCGCACAGGTGGTAGACCAAATGGCGATTCTGGCGGAAGGTGCAGCTGCCGTACGAACAGACATTGAGTTTTTGGCGAAATTGCCACTGTTTGATGGACATGACTCAGAATAATATCACTAGTCGTGAGTCTCGCCGCTGAGATAGATTTGACGGATGATTTTATAGTCATTTTTGGCTTTATCAGTATTGTGTGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCTATTTTGAGCCGAATTCGAGCGTTTTACAAAATCTTGAGAAGCAATCATTCTTCAATGGCAATGCAAATTCAATTAAACTGACGGGCACGCTATACTTTCGTGGATGATATTTTAGACAATTGACCATCCTCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAAACTCAATTCTGCAATTTTGGATTGTTGATTTAACGGGATTTGTTTAGT # Right flank : AAACAAAGCATAAAGTAAGAAAAAGTAACATGGCAAATCACTCTAAATATCTTACGCATTGAAATATTTAGTAAGCGATTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAAGATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTCGCTGTTGAGGCGTAAAAGTAGTACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCAGTGCTTGCTCATCATCATAGTTATGCAGTGCAATACTCTGATTATTATCTTTCGGAAGACTGCGCAACCCATTAAAAATCTTTCTATCATACGCTGTCTTTACCTCAATAATGCTTGTAGAGGTTGTATAATAACTAACAAGTTGTTTTTCATCGTAATAAACCGTGGTTGATCGTGTGTTATTACTCTCATCTTCCAGGGCCTTTGTT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //